Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:51618560-51909084

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2837 11 51619493 to 51620154 661 CpG island CpG island 2837
Tssr101285 11 51619707 to 51619714 7 + TSS region transcription start site region 101285
Tssr101286 11 51619731 to 51619813 82 + TSS region transcription start site region 101286
Nhp2 11 51619773 to 51623714 3941 + protein coding gene NHP2 ribonucleoprotein
Rmnd5b 11 51623673 to 51635896 12223 - protein coding gene required for meiotic nuclear division 5 homolog B
Cpgi2838 11 51635462 to 51636142 680 CpG island CpG island 2838
Tssr107810 11 51635722 to 51635784 62 - TSS region transcription start site region 107810
Tssr107811 11 51635848 to 51635859 11 - TSS region transcription start site region 107811
Tssr107812 11 51635870 to 51635891 21 - TSS region transcription start site region 107812
Tssr101287 11 51636055 to 51636076 21 + TSS region transcription start site region 101287
Tssr107813 11 51637964 to 51637984 20 - TSS region transcription start site region 107813
4833419E13Rik 11 51638887 to 51640335 1448 unclassified gene RIKEN cDNA 4833419E13 gene
N4bp3 11 51643063 to 51650842 7779 - protein coding gene NEDD4 binding protein 3
Tssr3488 11 51644325 to 51644328 3 + TSS region transcription start site region 3488
Tssr107814 11 51644341 to 51644352 11 - TSS region transcription start site region 107814
Tssr107815 11 51644367 to 51644391 24 - TSS region transcription start site region 107815
Tssr107816 11 51644393 to 51644403 10 - TSS region transcription start site region 107816
Cpgi2839 11 51650050 to 51651298 1248 CpG island CpG island 2839
Tssr107817 11 51650754 to 51650764 10 - TSS region transcription start site region 107817
Tssr107818 11 51650784 to 51650810 26 - TSS region transcription start site region 107818
Tssr107819 11 51650813 to 51650851 38 - TSS region transcription start site region 107819
Tssr107820 11 51650858 to 51650877 19 - TSS region transcription start site region 107820
Tssr101288 11 51650901 to 51650995 94 + TSS region transcription start site region 101288
D930048N14Rik 11 51650954 to 51657681 6727 + protein coding gene RIKEN cDNA D930048N14 gene
Tssr107821 11 51651031 to 51651046 15 - TSS region transcription start site region 107821
Gm30058 11 51652090 to 51657090 5000 - lncRNA gene predicted gene, 30058
0610009B22Rik 11 51685386 to 51688874 3488 - protein coding gene RIKEN cDNA 0610009B22 gene
Cpgi2840 11 51688469 to 51689299 830 CpG island CpG island 2840
Tssr107822 11 51688503 to 51688514 11 - TSS region transcription start site region 107822
Tssr107823 11 51688614 to 51688669 55 - TSS region transcription start site region 107823
Sec24a 11 51692263 to 51757280 65017 - protein coding gene Sec24 related gene family, member A (S. cerevisiae)
Tssr107824 11 51693098 to 51693142 44 - TSS region transcription start site region 107824
Tssr107825 11 51693462 to 51693466 4 - TSS region transcription start site region 107825
Gm25291 11 51737779 to 51737922 143 - snoRNA gene predicted gene, 25291
Tssr3489 11 51755656 to 51755666 10 - TSS region transcription start site region 3489
Cpgi2841 11 51755709 to 51757099 1390 CpG island CpG island 2841
Tssr101289 11 51755941 to 51755944 3 + TSS region transcription start site region 101289
Tssr107826 11 51756378 to 51756493 115 - TSS region transcription start site region 107826
Cpgi2842 11 51763560 to 51764084 524 CpG island CpG island 2842
Tssr107827 11 51763596 to 51763637 41 - TSS region transcription start site region 107827
Tssr101290 11 51763654 to 51763669 15 + TSS region transcription start site region 101290
Tssr101291 11 51763682 to 51763749 67 + TSS region transcription start site region 101291
Sar1b 11 51763687 to 51791925 28238 + protein coding gene secretion associated Ras related GTPase 1B
Jade2 11 51813455 to 51857653 44198 - protein coding gene jade family PHD finger 2
Tssr107828 11 51833520 to 51833547 27 - TSS region transcription start site region 107828
Tssr107829 11 51834078 to 51834084 6 - TSS region transcription start site region 107829
Gm30110 11 51855510 to 51856597 1087 + lncRNA gene predicted gene, 30110
Cpgi2843 11 51855559 to 51858689 3130 CpG island CpG island 2843
Tssr107830 11 51857089 to 51857110 21 - TSS region transcription start site region 107830
Tssr107831 11 51857599 to 51857610 11 - TSS region transcription start site region 107831
Tssr107832 11 51857624 to 51857686 62 - TSS region transcription start site region 107832
Tssr107833 11 51857988 to 51858043 55 - TSS region transcription start site region 107833
Cpgi2844 11 51858740 to 51859146 406 CpG island CpG island 2844
Gm39820 11 51862017 to 51869812 7795 - lncRNA gene predicted gene, 39820
Tssr107834 11 51874997 to 51875000 3 - TSS region transcription start site region 107834
Tssr101292 11 51876085 to 51876110 25 + TSS region transcription start site region 101292
Tssr101293 11 51884007 to 51884014 7 + TSS region transcription start site region 101293
Gm39821 11 51884029 to 51889041 5012 + lncRNA gene predicted gene, 39821
Tssr101294 11 51884073 to 51884121 48 + TSS region transcription start site region 101294
Tssr101295 11 51884139 to 51884147 8 + TSS region transcription start site region 101295
Tssr101296 11 51884265 to 51884284 19 + TSS region transcription start site region 101296
Gm46281 11 51889060 to 51890280 1220 + lncRNA gene predicted gene, 46281
Gm39822 11 51898966 to 51909624 10658 + lincRNA gene predicted gene, 39822