Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:51279397-55789605

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940 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae44b 11 40059901 to 54203622 14143721 QTL experimental allergic encephalomyelitis susceptibility 44b
Vmbic10 11 42881799 to 54190238 11308439 QTL ventral midbrain iron content 10
Clk4 11 51263114 to 51281770 18656 + protein coding gene CDC like kinase 4
Cpgi2834 11 51289598 to 51290930 1332 CpG island CpG island 2834
Tssr101277 11 51289738 to 51289754 16 + TSS region transcription start site region 101277
Col23a1 11 51289920 to 51583918 293998 + protein coding gene collagen, type XXIII, alpha 1
Tssr101278 11 51289968 to 51290011 43 + TSS region transcription start site region 101278
Tssr101279 11 51384178 to 51384189 11 + TSS region transcription start site region 101279
D11Jcs12 11 51540228 to 51540484 256 DNA segment DNA segment, Chr 11, John C. Schimenti 12
D11Mit314 11 51561652 to 51561775 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 314
Tcpm1 11 51561652 to 53725103 2163451 QTL T cell phenotype modifier 1
Tssr101280 11 51577888 to 51577894 6 + TSS region transcription start site region 101280
Tssr107796 11 51578543 to 51578557 14 - TSS region transcription start site region 107796
Cpgi2835 11 51584391 to 51585436 1045 CpG island CpG island 2835
Phykpl 11 51584540 to 51603271 18731 + protein coding gene 5-phosphohydroxy-L-lysine phospholyase
Tssr107797 11 51584641 to 51584687 46 - TSS region transcription start site region 107797
Tssr101281 11 51584759 to 51584821 62 + TSS region transcription start site region 101281
Hnrnpab 11 51600100 to 51606847 6747 - protein coding gene heterogeneous nuclear ribonucleoprotein A/B
Tssr107798 11 51601269 to 51601314 45 - TSS region transcription start site region 107798
Tssr107799 11 51601796 to 51601816 20 - TSS region transcription start site region 107799
Tssr107800 11 51602621 to 51602639 18 - TSS region transcription start site region 107800
Tssr107801 11 51604456 to 51604487 31 - TSS region transcription start site region 107801
Tssr107802 11 51605121 to 51605125 4 - TSS region transcription start site region 107802
Tssr107803 11 51605486 to 51605508 22 - TSS region transcription start site region 107803
Tssr101282 11 51605589 to 51605609 20 + TSS region transcription start site region 101282
Tssr107804 11 51605622 to 51605636 14 - TSS region transcription start site region 107804
Cpgi2836 11 51605698 to 51607386 1688 CpG island CpG island 2836
Tssr101283 11 51606330 to 51606355 25 + TSS region transcription start site region 101283
Tssr107805 11 51606590 to 51606595 5 - TSS region transcription start site region 107805
Tssr107806 11 51606840 to 51606857 17 - TSS region transcription start site region 107806
Tssr107807 11 51606867 to 51606885 18 - TSS region transcription start site region 107807
Tssr107808 11 51606890 to 51606895 5 - TSS region transcription start site region 107808
Tssr101284 11 51607006 to 51607041 35 + TSS region transcription start site region 101284
Tssr107809 11 51615729 to 51615765 36 - TSS region transcription start site region 107809
Cpgi2837 11 51619493 to 51620154 661 CpG island CpG island 2837
Tssr101285 11 51619707 to 51619714 7 + TSS region transcription start site region 101285
Tssr101286 11 51619731 to 51619813 82 + TSS region transcription start site region 101286
Nhp2 11 51619773 to 51623714 3941 + protein coding gene NHP2 ribonucleoprotein
Rmnd5b 11 51623673 to 51635896 12223 - protein coding gene required for meiotic nuclear division 5 homolog B
Cpgi2838 11 51635462 to 51636142 680 CpG island CpG island 2838
Tssr107810 11 51635722 to 51635784 62 - TSS region transcription start site region 107810
Tssr107811 11 51635848 to 51635859 11 - TSS region transcription start site region 107811
Tssr107812 11 51635870 to 51635891 21 - TSS region transcription start site region 107812
Tssr101287 11 51636055 to 51636076 21 + TSS region transcription start site region 101287
Tssr107813 11 51637964 to 51637984 20 - TSS region transcription start site region 107813
4833419E13Rik 11 51638887 to 51640335 1448 unclassified gene RIKEN cDNA 4833419E13 gene
N4bp3 11 51643063 to 51650842 7779 - protein coding gene NEDD4 binding protein 3
Tssr3488 11 51644325 to 51644328 3 + TSS region transcription start site region 3488
Tssr107814 11 51644341 to 51644352 11 - TSS region transcription start site region 107814
Tssr107815 11 51644367 to 51644391 24 - TSS region transcription start site region 107815
Tssr107816 11 51644393 to 51644403 10 - TSS region transcription start site region 107816
Cpgi2839 11 51650050 to 51651298 1248 CpG island CpG island 2839
Tssr107817 11 51650754 to 51650764 10 - TSS region transcription start site region 107817
Tssr107818 11 51650784 to 51650810 26 - TSS region transcription start site region 107818
Tssr107819 11 51650813 to 51650851 38 - TSS region transcription start site region 107819
Tssr107820 11 51650858 to 51650877 19 - TSS region transcription start site region 107820
Tssr101288 11 51650901 to 51650995 94 + TSS region transcription start site region 101288
D930048N14Rik 11 51650954 to 51657681 6727 + protein coding gene RIKEN cDNA D930048N14 gene
Tssr107821 11 51651031 to 51651046 15 - TSS region transcription start site region 107821
Gm30058 11 51652090 to 51657090 5000 - lncRNA gene predicted gene, 30058
0610009B22Rik 11 51685386 to 51688874 3488 - protein coding gene RIKEN cDNA 0610009B22 gene
Cpgi2840 11 51688469 to 51689299 830 CpG island CpG island 2840
Tssr107822 11 51688503 to 51688514 11 - TSS region transcription start site region 107822
Tssr107823 11 51688614 to 51688669 55 - TSS region transcription start site region 107823
Sec24a 11 51692263 to 51757280 65017 - protein coding gene Sec24 related gene family, member A (S. cerevisiae)
Tssr107824 11 51693098 to 51693142 44 - TSS region transcription start site region 107824
Tssr107825 11 51693462 to 51693466 4 - TSS region transcription start site region 107825
Gm25291 11 51737779 to 51737922 143 - snoRNA gene predicted gene, 25291
Tssr3489 11 51755656 to 51755666 10 - TSS region transcription start site region 3489
Cpgi2841 11 51755709 to 51757099 1390 CpG island CpG island 2841
Tssr101289 11 51755941 to 51755944 3 + TSS region transcription start site region 101289
Tssr107826 11 51756378 to 51756493 115 - TSS region transcription start site region 107826
Cpgi2842 11 51763560 to 51764084 524 CpG island CpG island 2842
Tssr107827 11 51763596 to 51763637 41 - TSS region transcription start site region 107827
Tssr101290 11 51763654 to 51763669 15 + TSS region transcription start site region 101290
Tssr101291 11 51763682 to 51763749 67 + TSS region transcription start site region 101291
Sar1b 11 51763687 to 51791925 28238 + protein coding gene secretion associated Ras related GTPase 1B
Jade2 11 51813455 to 51857653 44198 - protein coding gene jade family PHD finger 2
Tssr107828 11 51833520 to 51833547 27 - TSS region transcription start site region 107828
Tssr107829 11 51834078 to 51834084 6 - TSS region transcription start site region 107829
Gm30110 11 51855510 to 51856597 1087 + lncRNA gene predicted gene, 30110
Cpgi2843 11 51855559 to 51858689 3130 CpG island CpG island 2843
Tssr107830 11 51857089 to 51857110 21 - TSS region transcription start site region 107830
Tssr107831 11 51857599 to 51857610 11 - TSS region transcription start site region 107831
Tssr107832 11 51857624 to 51857686 62 - TSS region transcription start site region 107832
Tssr107833 11 51857988 to 51858043 55 - TSS region transcription start site region 107833
Cpgi2844 11 51858740 to 51859146 406 CpG island CpG island 2844
Gm39820 11 51862017 to 51869812 7795 - lncRNA gene predicted gene, 39820
Tssr107834 11 51874997 to 51875000 3 - TSS region transcription start site region 107834
Tssr101292 11 51876085 to 51876110 25 + TSS region transcription start site region 101292
Tssr101293 11 51884007 to 51884014 7 + TSS region transcription start site region 101293
Gm39821 11 51884029 to 51889041 5012 + lncRNA gene predicted gene, 39821
Tssr101294 11 51884073 to 51884121 48 + TSS region transcription start site region 101294
Tssr101295 11 51884139 to 51884147 8 + TSS region transcription start site region 101295
Tssr101296 11 51884265 to 51884284 19 + TSS region transcription start site region 101296
Gm46281 11 51889060 to 51890280 1220 + lncRNA gene predicted gene, 46281
Gm39822 11 51898966 to 51909624 10658 + lincRNA gene predicted gene, 39822
Tssr101297 11 51915661 to 51915664 3 + TSS region transcription start site region 101297
Tssr101298 11 51915766 to 51915774 8 + TSS region transcription start site region 101298
Tssr101299 11 51916906 to 51916919 13 + TSS region transcription start site region 101299
Tssr107835 11 51931855 to 51931870 15 - TSS region transcription start site region 107835
Gm26551 11 51949882 to 52269514 319632 - lincRNA gene predicted gene, 26551
Tssr107836 11 51950086 to 51950122 36 - TSS region transcription start site region 107836
Tssr101300 11 51961345 to 51961352 7 + TSS region transcription start site region 101300
Gm26061 11 51964382 to 51964489 107 + snRNA gene predicted gene, 26061
Cpgi2845 11 51967228 to 51968297 1069 CpG island CpG island 2845
Tssr101301 11 51967649 to 51967709 60 + TSS region transcription start site region 101301
Cdkn2aipnl 11 51967661 to 51977334 9673 + protein coding gene CDKN2A interacting protein N-terminal like
n-TAagc1 11 51976539 to 51976610 71 + tRNA gene nuclear encoded tRNA alanine 1 (anticodon AGC)
Ube2b 11 51985497 to 52000762 15265 - protein coding gene ubiquitin-conjugating enzyme E2B
5430406J06Rik 11 51993571 to 51994503 932 unclassified gene RIKEN cDNA 5430406J06 gene
Tssr107837 11 51997847 to 51997878 31 - TSS region transcription start site region 107837
Tssr107838 11 51998897 to 51998903 6 - TSS region transcription start site region 107838
Cpgi2846 11 51999731 to 52000944 1213 CpG island CpG island 2846
Tssr107839 11 52000356 to 52000388 32 - TSS region transcription start site region 107839
Tssr107840 11 52000410 to 52000428 18 - TSS region transcription start site region 107840
Tssr107841 11 52000432 to 52000475 43 - TSS region transcription start site region 107841
Tssr107842 11 52000721 to 52000744 23 - TSS region transcription start site region 107842
Tssr107843 11 52000748 to 52000775 27 - TSS region transcription start site region 107843
Tssr107844 11 52000780 to 52000794 14 - TSS region transcription start site region 107844
Gm12204 11 52000853 to 52001911 1058 + antisense lncRNA gene predicted gene 12204
Tssr101302 11 52000912 to 52000928 16 + TSS region transcription start site region 101302
Tssr101303 11 52000931 to 52000948 17 + TSS region transcription start site region 101303
Cpgi2847 11 52004052 to 52004568 516 CpG island CpG island 2847
Tssr101304 11 52004191 to 52004217 26 + TSS region transcription start site region 101304
Tssr101305 11 52004220 to 52004311 91 + TSS region transcription start site region 101305
Cdkl3 11 52004221 to 52089784 85563 + protein coding gene cyclin-dependent kinase-like 3
Tssr101306 11 52004313 to 52004335 22 + TSS region transcription start site region 101306
Tssr101307 11 52004340 to 52004366 26 + TSS region transcription start site region 101307
Gm12205 11 52038850 to 52039471 621 - antisense lncRNA gene predicted gene 12205
D11Mit154 11 52048521 to 52048633 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 154
Gm2769 11 52097305 to 52098824 1519 protein coding gene predicted gene 2769
Cpgi2848 11 52098124 to 52099731 1607 CpG island CpG island 2848
Tssr107845 11 52098515 to 52098533 18 - TSS region transcription start site region 107845
Tssr101308 11 52098785 to 52098796 11 + TSS region transcription start site region 101308
Tssr101309 11 52098802 to 52098813 11 + TSS region transcription start site region 101309
Tssr101310 11 52098815 to 52098842 27 + TSS region transcription start site region 101310
Ppp2ca 11 52098824 to 52122749 23925 + protein coding gene protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
Tssr101311 11 52098852 to 52098875 23 + TSS region transcription start site region 101311
Gm24157 11 52099043 to 52099153 110 - miRNA gene predicted gene, 24157
Tssr107846 11 52099711 to 52099739 28 - TSS region transcription start site region 107846
Gm30631 11 52116311 to 52117008 697 - pseudogene predicted gene, 30631
Tssr101312 11 52117997 to 52118010 13 + TSS region transcription start site region 101312
Tssr101313 11 52120914 to 52120921 7 + TSS region transcription start site region 101313
Tssr107847 11 52120960 to 52120975 15 - TSS region transcription start site region 107847
Tssr101314 11 52121902 to 52121957 55 + TSS region transcription start site region 101314
Tssr101315 11 52122263 to 52122279 16 + TSS region transcription start site region 101315
Tssr101316 11 52122417 to 52122432 15 + TSS region transcription start site region 101316
9430098F02Rik 11 52124530 to 52127779 3249 - lincRNA gene RIKEN cDNA 9430098F02 gene
Mir3061 11 52126746 to 52126836 90 + miRNA gene microRNA 3061
Olfr1373 11 52144593 to 52145528 935 - protein coding gene olfactory receptor 1373
Olfr1372-ps1 11 52154876 to 52157907 3031 - pseudogene olfactory receptor 1372, pseudogene 1
Cpgi2849 11 52167144 to 52168440 1296 CpG island CpG island 2849
Tssr107848 11 52168117 to 52168137 20 - TSS region transcription start site region 107848
Cpgi2850 11 52187096 to 52187418 322 CpG island CpG island 2850
Gm12206 11 52188953 to 52189553 600 + pseudogene predicted gene 12206
Olfr1371 11 52213052 to 52213987 935 - protein coding gene olfactory receptor 1371
Cpgi2851 11 52224135 to 52224496 361 CpG island CpG island 2851
Tssr101317 11 52224315 to 52224356 41 + TSS region transcription start site region 101317
Tssr3490 11 52224620 to 52224641 21 + TSS region transcription start site region 3490
Tssr101318 11 52224672 to 52224683 11 + TSS region transcription start site region 101318
Tssr3491 11 52230872 to 52230884 12 + TSS region transcription start site region 3491
Cpgi2852 11 52231697 to 52232623 926 CpG island CpG island 2852
Tssr107849 11 52231884 to 52231897 13 - TSS region transcription start site region 107849
Skp1a 11 52231995 to 52246858 14863 + protein coding gene S-phase kinase-associated protein 1A
Tssr101319 11 52232028 to 52232041 13 + TSS region transcription start site region 101319
Tssr101320 11 52232175 to 52232180 5 + TSS region transcription start site region 101320
Tssr101321 11 52232183 to 52232228 45 + TSS region transcription start site region 101321
Tssr101322 11 52232237 to 52232256 19 + TSS region transcription start site region 101322
Tssr101323 11 52232264 to 52232286 22 + TSS region transcription start site region 101323
Tssr101324 11 52232306 to 52232315 9 + TSS region transcription start site region 101324
Gm12207 11 52233724 to 52236619 2895 + antisense lncRNA gene predicted gene 12207
D11Pjn4 11 52236615 to 52236770 155 DNA segment DNA segment, Chr 11, Patsy J. Nishina 4
Tssr3492 11 52241793 to 52241797 4 + TSS region transcription start site region 3492
Tssr101325 11 52246187 to 52246208 21 + TSS region transcription start site region 101325
Tssr101326 11 52246551 to 52246559 8 + TSS region transcription start site region 101326
Tcf7 11 52252371 to 52283014 30643 - protein coding gene transcription factor 7, T cell specific
Tssr107850 11 52252654 to 52252669 15 - TSS region transcription start site region 107850
Tssr107851 11 52252886 to 52252901 15 - TSS region transcription start site region 107851
Tssr107852 11 52253482 to 52253493 11 - TSS region transcription start site region 107852
Tssr101327 11 52253661 to 52253698 37 + TSS region transcription start site region 101327
Tssr101328 11 52253712 to 52253758 46 + TSS region transcription start site region 101328
Tssr107853 11 52253719 to 52253750 31 - TSS region transcription start site region 107853
Tssr107854 11 52253822 to 52253836 14 - TSS region transcription start site region 107854
Tssr107855 11 52253859 to 52253890 31 - TSS region transcription start site region 107855
Tssr3493 11 52253871 to 52253885 14 + TSS region transcription start site region 3493
Tssr107856 11 52253903 to 52253932 29 - TSS region transcription start site region 107856
Tssr101329 11 52256251 to 52256283 32 + TSS region transcription start site region 101329
Tssr107857 11 52256836 to 52256856 20 - TSS region transcription start site region 107857
Tssr107858 11 52256976 to 52256998 22 - TSS region transcription start site region 107858
Tssr107859 11 52257000 to 52257025 25 - TSS region transcription start site region 107859
Tssr107860 11 52257061 to 52257087 26 - TSS region transcription start site region 107860
Tssr107861 11 52257724 to 52257781 57 - TSS region transcription start site region 107861
Tssr107862 11 52257793 to 52257809 16 - TSS region transcription start site region 107862
Tssr107863 11 52258888 to 52258899 11 - TSS region transcription start site region 107863
Tssr107864 11 52260593 to 52260625 32 - TSS region transcription start site region 107864
Tssr101330 11 52261505 to 52261531 26 + TSS region transcription start site region 101330
Tssr101331 11 52261537 to 52261564 27 + TSS region transcription start site region 101331
Tssr107865 11 52261542 to 52261565 23 - TSS region transcription start site region 107865
Tssr107866 11 52261575 to 52261600 25 - TSS region transcription start site region 107866