Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:51239920-51633918

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
BC049762 11 51253651 to 51263046 9395 - protein coding gene cDNA sequence BC049762
Tssr101273 11 51261719 to 51261731 12 + TSS region transcription start site region 101273
Tssr101274 11 51262549 to 51262576 27 + TSS region transcription start site region 101274
Cpgi2833 11 51262618 to 51263856 1238 CpG island CpG island 2833
Tssr107791 11 51262796 to 51262809 13 - TSS region transcription start site region 107791
Tssr107792 11 51262940 to 51262968 28 - TSS region transcription start site region 107792
Tssr101275 11 51262945 to 51262954 9 + TSS region transcription start site region 101275
Tssr107793 11 51262988 to 51263012 24 - TSS region transcription start site region 107793
Tssr107794 11 51263017 to 51263035 18 - TSS region transcription start site region 107794
Tssr107795 11 51263042 to 51263061 19 - TSS region transcription start site region 107795
Clk4 11 51263114 to 51281770 18656 + protein coding gene CDC like kinase 4
Tssr101276 11 51263121 to 51263197 76 + TSS region transcription start site region 101276
Gm25082 11 51270435 to 51270689 254 + unclassified non-coding RNA gene predicted gene, 25082
Cpgi2834 11 51289598 to 51290930 1332 CpG island CpG island 2834
Tssr101277 11 51289738 to 51289754 16 + TSS region transcription start site region 101277
Col23a1 11 51289920 to 51583918 293998 + protein coding gene collagen, type XXIII, alpha 1
Tssr101278 11 51289968 to 51290011 43 + TSS region transcription start site region 101278
Tssr101279 11 51384178 to 51384189 11 + TSS region transcription start site region 101279
D11Jcs12 11 51540228 to 51540484 256 DNA segment DNA segment, Chr 11, John C. Schimenti 12
Tcpm1 11 51561652 to 53725103 2163451 QTL T cell phenotype modifier 1
D11Mit314 11 51561652 to 51561775 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 314
Tssr101280 11 51577888 to 51577894 6 + TSS region transcription start site region 101280
Tssr107796 11 51578543 to 51578557 14 - TSS region transcription start site region 107796
Cpgi2835 11 51584391 to 51585436 1045 CpG island CpG island 2835
Phykpl 11 51584540 to 51603271 18731 + protein coding gene 5-phosphohydroxy-L-lysine phospholyase
Tssr107797 11 51584641 to 51584687 46 - TSS region transcription start site region 107797
Tssr101281 11 51584759 to 51584821 62 + TSS region transcription start site region 101281
Hnrnpab 11 51600100 to 51606847 6747 - protein coding gene heterogeneous nuclear ribonucleoprotein A/B
Tssr107798 11 51601269 to 51601314 45 - TSS region transcription start site region 107798
Tssr107799 11 51601796 to 51601816 20 - TSS region transcription start site region 107799
Tssr107800 11 51602621 to 51602639 18 - TSS region transcription start site region 107800
Tssr107801 11 51604456 to 51604487 31 - TSS region transcription start site region 107801
Tssr107802 11 51605121 to 51605125 4 - TSS region transcription start site region 107802
Tssr107803 11 51605486 to 51605508 22 - TSS region transcription start site region 107803
Tssr101282 11 51605589 to 51605609 20 + TSS region transcription start site region 101282
Tssr107804 11 51605622 to 51605636 14 - TSS region transcription start site region 107804
Cpgi2836 11 51605698 to 51607386 1688 CpG island CpG island 2836
Tssr101283 11 51606330 to 51606355 25 + TSS region transcription start site region 101283
Tssr107805 11 51606590 to 51606595 5 - TSS region transcription start site region 107805
Tssr107806 11 51606840 to 51606857 17 - TSS region transcription start site region 107806
Tssr107807 11 51606867 to 51606885 18 - TSS region transcription start site region 107807
Tssr107808 11 51606890 to 51606895 5 - TSS region transcription start site region 107808
Tssr101284 11 51607006 to 51607041 35 + TSS region transcription start site region 101284
Tssr107809 11 51615729 to 51615765 36 - TSS region transcription start site region 107809
Cpgi2837 11 51619493 to 51620154 661 CpG island CpG island 2837
Tssr101285 11 51619707 to 51619714 7 + TSS region transcription start site region 101285
Tssr101286 11 51619731 to 51619813 82 + TSS region transcription start site region 101286
Nhp2 11 51619773 to 51623714 3941 + protein coding gene NHP2 ribonucleoprotein
Rmnd5b 11 51623673 to 51635896 12223 - protein coding gene required for meiotic nuclear division 5 homolog B