Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:5093029-6633048

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378 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ewsr1 11 5069687 to 5099099 29412 - protein coding gene Ewing sarcoma breakpoint region 1
Cpgi2530 11 5098233 to 5100126 1893 CpG island CpG island 2530
Tssr106603 11 5098750 to 5098759 9 - TSS region transcription start site region 106603
Tssr100164 11 5098915 to 5098926 11 + TSS region transcription start site region 100164
Tssr106604 11 5099036 to 5099050 14 - TSS region transcription start site region 106604
Tssr106605 11 5099053 to 5099081 28 - TSS region transcription start site region 106605
Tssr106606 11 5099084 to 5099095 11 - TSS region transcription start site region 106606
Rhbdd3 11 5099187 to 5106100 6913 + protein coding gene rhomboid domain containing 3
Tssr106607 11 5099223 to 5099242 19 - TSS region transcription start site region 106607
Tssr100165 11 5099266 to 5099279 13 + TSS region transcription start site region 100165
Tssr106608 11 5099323 to 5099356 33 - TSS region transcription start site region 106608
Tssr100166 11 5099406 to 5099518 112 + TSS region transcription start site region 100166
Tssr100167 11 5099626 to 5099646 20 + TSS region transcription start site region 100167
Tssr100168 11 5099659 to 5099677 18 + TSS region transcription start site region 100168
Gm46267 11 5099967 to 5101417 1450 - lncRNA gene predicted gene, 46267
Tssr100169 11 5105177 to 5105187 10 + TSS region transcription start site region 100169
Tssr100170 11 5105214 to 5105221 7 + TSS region transcription start site region 100170
Emid1 11 5106265 to 5152257 45992 - protein coding gene EMI domain containing 1
Tssr106609 11 5110117 to 5110122 5 - TSS region transcription start site region 106609
Gm46266 11 5112392 to 5131907 19515 + lncRNA gene predicted gene, 46266
Tssr106610 11 5129220 to 5129260 40 - TSS region transcription start site region 106610
Gm39572 11 5136186 to 5137082 896 + lncRNA gene predicted gene, 39572
Tssr100171 11 5136238 to 5136254 16 + TSS region transcription start site region 100171
Tssr100172 11 5136258 to 5136283 25 + TSS region transcription start site region 100172
Tssr100173 11 5146570 to 5146618 48 + TSS region transcription start site region 100173
Tssr106611 11 5150062 to 5150094 32 - TSS region transcription start site region 106611
Cpgi2531 11 5151787 to 5152842 1055 CpG island CpG island 2531
Tssr106612 11 5152218 to 5152272 54 - TSS region transcription start site region 106612
Tssr106613 11 5177225 to 5177230 5 - TSS region transcription start site region 106613
D11Dcr3 11 5180568 to 5180681 113 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 3
Gm18478 11 5187863 to 5188467 604 + pseudogene predicted gene, 18478
Kremen1 11 5191552 to 5261558 70006 - protein coding gene kringle containing transmembrane protein 1
Tssr100174 11 5196005 to 5196012 7 + TSS region transcription start site region 100174
Tssr3418 11 5229795 to 5229807 12 - TSS region transcription start site region 3418
Gm25142 11 5251850 to 5251956 106 + snRNA gene predicted gene, 25142
Tssr106614 11 5253712 to 5253722 10 - TSS region transcription start site region 106614
Gm46268 11 5260481 to 5268799 8318 + lncRNA gene predicted gene, 46268
Cpgi2532 11 5260973 to 5262323 1350 CpG island CpG island 2532
Tssr106615 11 5261530 to 5261543 13 - TSS region transcription start site region 106615
Tssr106616 11 5261569 to 5261637 68 - TSS region transcription start site region 106616
Tssr106617 11 5261710 to 5261721 11 - TSS region transcription start site region 106617
Tssr106618 11 5261722 to 5261754 32 - TSS region transcription start site region 106618
Cpgi2533 11 5263071 to 5263362 291 CpG island CpG island 2533
Gm30172 11 5273921 to 5275926 2005 + protein coding gene predicted gene, 30172
Znrf3 11 5276329 to 5444847 168518 - protein coding gene zinc and ring finger 3
Tssr106619 11 5277561 to 5277567 6 - TSS region transcription start site region 106619
BC025031 11 5313002 to 5315603 2601 unclassified gene cDNA sequence BC025031
D11Mit74 11 5326905 to 5327122 217 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 74
Tssr106620 11 5381734 to 5381745 11 - TSS region transcription start site region 106620
Tssr106621 11 5390914 to 5390920 6 - TSS region transcription start site region 106621
Tssr106622 11 5394429 to 5394433 4 - TSS region transcription start site region 106622
Tssr106623 11 5401276 to 5401282 6 - TSS region transcription start site region 106623
Tssr106624 11 5421562 to 5421566 4 - TSS region transcription start site region 106624
Cpgi2534 11 5443759 to 5445635 1876 CpG island CpG island 2534
Tssr106625 11 5444779 to 5444823 44 - TSS region transcription start site region 106625
Tssr106626 11 5444838 to 5444872 34 - TSS region transcription start site region 106626
Tssr106627 11 5478337 to 5478372 35 - TSS region transcription start site region 106627
Tssr100175 11 5485870 to 5485914 44 + TSS region transcription start site region 100175
Gm11962 11 5495192 to 5495446 254 - pseudogene predicted gene 11962
Tssr100176 11 5498676 to 5498689 13 + TSS region transcription start site region 100176
Gm11963 11 5498840 to 5505699 6859 + antisense lncRNA gene predicted gene 11963
Tssr100177 11 5505964 to 5505982 18 + TSS region transcription start site region 100177
Cpgi2535 11 5520599 to 5521815 1216 CpG island CpG island 2535
Tssr100178 11 5520652 to 5520656 4 + TSS region transcription start site region 100178
Xbp1 11 5520659 to 5525893 5234 + protein coding gene X-box binding protein 1
Tssr100179 11 5520951 to 5520966 15 + TSS region transcription start site region 100179
Tssr100180 11 5520970 to 5520989 19 + TSS region transcription start site region 100180
Tssr100181 11 5524789 to 5524804 15 + TSS region transcription start site region 100181
Tssr100182 11 5525191 to 5525204 13 + TSS region transcription start site region 100182
Tssr100183 11 5525255 to 5525275 20 + TSS region transcription start site region 100183
Tssr100184 11 5525474 to 5525486 12 + TSS region transcription start site region 100184
Ccdc117 11 5528887 to 5542187 13300 - protein coding gene coiled-coil domain containing 117
Cpgi2536 11 5541475 to 5542378 903 CpG island CpG island 2536
Tssr106628 11 5541768 to 5541774 6 - TSS region transcription start site region 106628
Tssr100185 11 5541872 to 5541893 21 + TSS region transcription start site region 100185
Tssr100186 11 5541896 to 5541929 33 + TSS region transcription start site region 100186
Tssr100187 11 5541932 to 5541942 10 + TSS region transcription start site region 100187
Tssr106629 11 5542139 to 5542170 31 - TSS region transcription start site region 106629
Tssr106630 11 5542177 to 5542219 42 - TSS region transcription start site region 106630
Tssr106631 11 5542226 to 5542243 17 - TSS region transcription start site region 106631
Tssr106632 11 5542244 to 5542267 23 - TSS region transcription start site region 106632
Tssr100188 11 5542441 to 5542446 5 + TSS region transcription start site region 100188
Gm22471 11 5560606 to 5560735 129 - snoRNA gene predicted gene, 22471
Gm3186 11 5563940 to 5564560 620 - pseudogene predicted gene 3186
Gm39573 11 5565391 to 5569118 3727 - lncRNA gene predicted gene, 39573
Tssr100189 11 5569679 to 5569690 11 + TSS region transcription start site region 100189
Ankrd36 11 5569684 to 5689337 119653 + protein coding gene ankyrin repeat domain 36
Tssr100190 11 5574107 to 5574115 8 + TSS region transcription start site region 100190
Tssr100191 11 5574156 to 5574167 11 + TSS region transcription start site region 100191
Tssr100192 11 5595435 to 5595438 3 + TSS region transcription start site region 100192
Tssr100193 11 5628740 to 5628754 14 + TSS region transcription start site region 100193
Tssr100194 11 5628756 to 5628767 11 + TSS region transcription start site region 100194
Cpgi2537 11 5634053 to 5634549 496 CpG island CpG island 2537
Gm11964 11 5634139 to 5634582 443 + pseudogene predicted gene 11964
Gm11965 11 5678356 to 5678632 276 - pseudogene predicted gene 11965
Mrps24 11 5703983 to 5707717 3734 - protein coding gene mitochondrial ribosomal protein S24
Cpgi2538 11 5706997 to 5707885 888 CpG island CpG island 2538
Tssr106633 11 5707658 to 5707708 50 - TSS region transcription start site region 106633
Tssr106634 11 5707729 to 5707732 3 - TSS region transcription start site region 106634
Urgcp 11 5713417 to 5762376 48959 - protein coding gene upregulator of cell proliferation
Tssr106635 11 5739366 to 5739369 3 - TSS region transcription start site region 106635
Cpgi2539 11 5740598 to 5741522 924 CpG island CpG island 2539
Tssr100195 11 5740740 to 5740755 15 + TSS region transcription start site region 100195
Tssr106636 11 5741117 to 5741139 22 - TSS region transcription start site region 106636
Tssr106637 11 5741141 to 5741182 41 - TSS region transcription start site region 106637
5730405O12Rik 11 5755006 to 5758298 3292 unclassified gene RIKEN cDNA 5730405O12 gene
Cpgi2540 11 5761752 to 5762817 1065 CpG island CpG island 2540
Tssr106638 11 5762044 to 5762053 9 - TSS region transcription start site region 106638
Tssr100196 11 5762121 to 5762182 61 + TSS region transcription start site region 100196
Ube2d-ps 11 5762150 to 5784710 22560 + pseudogene ubiquitin-conjugating enzyme E2D, pseudogene
Tssr106639 11 5762358 to 5762404 46 - TSS region transcription start site region 106639
Tssr100197 11 5784790 to 5784794 4 + TSS region transcription start site region 100197
Cpgi2541 11 5788133 to 5789123 990 CpG island CpG island 2541
Tssr106640 11 5788262 to 5788276 14 - TSS region transcription start site region 106640
Tssr106641 11 5788358 to 5788434 76 - TSS region transcription start site region 106641
Tssr100198 11 5788480 to 5788560 80 + TSS region transcription start site region 100198
Dbnl 11 5788488 to 5800962 12474 + protein coding gene drebrin-like
Tssr100199 11 5793709 to 5793726 17 + TSS region transcription start site region 100199
Tssr100200 11 5797511 to 5797526 15 + TSS region transcription start site region 100200
Tssr100201 11 5797540 to 5797554 14 + TSS region transcription start site region 100201
Tssr100202 11 5797987 to 5798005 18 + TSS region transcription start site region 100202
Tssr100203 11 5799284 to 5799305 21 + TSS region transcription start site region 100203
Tssr100204 11 5800147 to 5800184 37 + TSS region transcription start site region 100204
Pgam2 11 5801640 to 5803733 2093 - protein coding gene phosphoglycerate mutase 2
Tssr100205 11 5803269 to 5803280 11 + TSS region transcription start site region 100205
Tssr106642 11 5803319 to 5803347 28 - TSS region transcription start site region 106642
Tssr106643 11 5803558 to 5803569 11 - TSS region transcription start site region 106643
Tssr106644 11 5803683 to 5803689 6 - TSS region transcription start site region 106644
Tssr106645 11 5803706 to 5803728 22 - TSS region transcription start site region 106645
Tssr106646 11 5803735 to 5803759 24 - TSS region transcription start site region 106646
Gm11966 11 5818497 to 5818583 86 - pseudogene predicted gene 11966
Polm 11 5827860 to 5838016 10156 - protein coding gene polymerase (DNA directed), mu
Cpgi2542 11 5837314 to 5838064 750 CpG island CpG island 2542
Tssr106647 11 5837727 to 5837736 9 - TSS region transcription start site region 106647
Tssr106648 11 5837745 to 5837758 13 - TSS region transcription start site region 106648
Tssr106649 11 5837760 to 5837835 75 - TSS region transcription start site region 106649
Tssr100206 11 5849316 to 5849326 10 + TSS region transcription start site region 100206
Cpgi2543 11 5861553 to 5862550 997 CpG island CpG island 2543
Tssr100207 11 5861868 to 5861879 11 + TSS region transcription start site region 100207
Tssr100208 11 5861886 to 5861966 80 + TSS region transcription start site region 100208
Aebp1 11 5861947 to 5872088 10141 + protein coding gene AE binding protein 1
Tssr100209 11 5861976 to 5861989 13 + TSS region transcription start site region 100209
Tssr106650 11 5862294 to 5862301 7 - TSS region transcription start site region 106650
Tssr100210 11 5863029 to 5863048 19 + TSS region transcription start site region 100210
Tssr106651 11 5863967 to 5864003 36 - TSS region transcription start site region 106651
Tssr100211 11 5863978 to 5864003 25 + TSS region transcription start site region 100211
Tssr100212 11 5864217 to 5864241 24 + TSS region transcription start site region 100212
Tssr106652 11 5866968 to 5866990 22 - TSS region transcription start site region 106652
Cpgi2544 11 5869422 to 5869639 217 CpG island CpG island 2544
Tssr100213 11 5870551 to 5870562 11 + TSS region transcription start site region 100213
Tssr100214 11 5871626 to 5871648 22 + TSS region transcription start site region 100214
Tssr100215 11 5871771 to 5871782 11 + TSS region transcription start site region 100215
Pold2 11 5872180 to 5878256 6076 - protein coding gene polymerase (DNA directed), delta 2, regulatory subunit
Tssr106653 11 5876880 to 5876909 29 - TSS region transcription start site region 106653
Cpgi2545 11 5877896 to 5878627 731 CpG island CpG island 2545
Tssr106654 11 5878207 to 5878243 36 - TSS region transcription start site region 106654
Tssr106655 11 5878251 to 5878260 9 - TSS region transcription start site region 106655
Tssr100216 11 5878368 to 5878377 9 + TSS region transcription start site region 100216
Myl7 11 5896637 to 5898782 2145 - protein coding gene myosin, light polypeptide 7, regulatory
Tssr106656 11 5896664 to 5896691 27 - TSS region transcription start site region 106656
Tssr106657 11 5896739 to 5896765 26 - TSS region transcription start site region 106657
Tssr106658 11 5897986 to 5897997 11 - TSS region transcription start site region 106658
Tssr106659 11 5898010 to 5898043 33 - TSS region transcription start site region 106659
Tssr106660 11 5898528 to 5898541 13 - TSS region transcription start site region 106660
Tssr106661 11 5898560 to 5898574 14 - TSS region transcription start site region 106661
Tssr106662 11 5898617 to 5898632 15 - TSS region transcription start site region 106662
Tssr106663 11 5898771 to 5898788 17 - TSS region transcription start site region 106663
Gck 11 5900820 to 5950081 49261 - protein coding gene glucokinase
Cpgi2546 11 5901618 to 5902462 844 CpG island CpG island 2546
Cpgi2547 11 5902954 to 5903217 263 CpG island CpG island 2547
Tssr106664 11 5915095 to 5915100 5 - TSS region transcription start site region 106664
Tssr106665 11 5915106 to 5915113 7 - TSS region transcription start site region 106665
Tssr106666 11 5915126 to 5915141 15 - TSS region transcription start site region 106666
Gm11967 11 5915315 to 5916731 1416 + antisense lncRNA gene predicted gene 11967
Tssr106667 11 5949999 to 5950009 10 - TSS region transcription start site region 106667
Tssr106668 11 5950018 to 5950063 45 - TSS region transcription start site region 106668
Cpgi2548 11 5955265 to 5956328 1063 CpG island CpG island 2548
Tssr100217 11 5955754 to 5955821 67 + TSS region transcription start site region 100217
Ykt6 11 5955758 to 5967780 12022 + protein coding gene YKT6 v-SNARE homolog (S. cerevisiae)
Camk2b 11 5969642 to 6066125 96483 - protein coding gene calcium/calmodulin-dependent protein kinase II, beta
Tssr106669 11 5971726 to 5971738 12 - TSS region transcription start site region 106669
Tssr106670 11 5971763 to 5971775 12 - TSS region transcription start site region 106670
Cpgi2549 11 5971998 to 5972506 508 CpG island CpG island 2549
Tssr106671 11 5972446 to 5972472 26 - TSS region transcription start site region 106671
Tssr106672 11 5972684 to 5972708 24 - TSS region transcription start site region 106672
Tssr106673 11 5976192 to 5976216 24 - TSS region transcription start site region 106673
Tssr3419 11 5976230 to 5976238 8 - TSS region transcription start site region 3419
Tssr106674 11 5976319 to 5976329 10 - TSS region transcription start site region 106674
Tssr106675 11 5989658 to 5989670 12 - TSS region transcription start site region 106675
Tssr106676 11 6003179 to 6003191 12 - TSS region transcription start site region 106676
Tssr106677 11 6003202 to 6003218 16 - TSS region transcription start site region 106677
Gm40812 11 6006268 to 6010745 4477 + lncRNA gene predicted gene, 40812
Tssr106678 11 6008819 to 6008851 32 - TSS region transcription start site region 106678
Tssr106679 11 6018604 to 6018641 37 - TSS region transcription start site region 106679
Tssr106680 11 6029043 to 6029052 9 - TSS region transcription start site region 106680
Tssr106681 11 6029216 to 6029249 33 - TSS region transcription start site region 106681
Cpgi2550 11 6064073 to 6064428 355 CpG island CpG island 2550
Cpgi2551 11 6064535 to 6066517 1982 CpG island CpG island 2551
Tssr106682 11 6065539 to 6065635 96 - TSS region transcription start site region 106682
Tssr106683 11 6065637 to 6065663 26 - TSS region transcription start site region 106683