Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:50899598-51680930

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106 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp2 11 50898712 to 50916165 17453 - protein coding gene zinc finger protein 2
Cpgi2828 11 50915669 to 50916296 627 CpG island CpG island 2828
Tssr107784 11 50916136 to 50916179 43 - TSS region transcription start site region 107784
Zfp354b 11 50921823 to 50931633 9810 - protein coding gene zinc finger protein 354B
Cpgi2829 11 50930997 to 50931585 588 CpG island CpG island 2829
Tssr107785 11 50931612 to 50931642 30 - TSS region transcription start site region 107785
4933414I15Rik 11 50940819 to 50943833 3014 - protein coding gene RIKEN cDNA 4933414I15 gene
Tssr107786 11 50943713 to 50943756 43 - TSS region transcription start site region 107786
Tssr107787 11 50943761 to 50943765 4 - TSS region transcription start site region 107787
Tssr107788 11 50943770 to 50943775 5 - TSS region transcription start site region 107788
4930428B07Rik 11 50943880 to 50944529 649 unclassified gene RIKEN cDNA 4930428B07 gene
Prop1 11 50950806 to 50953632 2826 - protein coding gene paired like homeodomain factor 1
Cpgi2830 11 50952150 to 50952465 315 CpG island CpG island 2830
Tssr107789 11 50953745 to 50953768 23 - TSS region transcription start site region 107789
Olfr1379-ps1 11 50959009 to 50959948 939 + pseudogene olfactory receptor 1379, pseudogene 1
Olfr1378 11 50969020 to 50969967 947 + protein coding gene olfactory receptor 1378
Gm12661 11 50977313 to 50980064 2751 + pseudogene predicted gene 12661
Olfr1377 11 50984703 to 50985626 923 + protein coding gene olfactory receptor 1377
Olfr1376-ps1 11 50991806 to 50992712 906 + pseudogene olfactory receptor 1376, pseudogene 1
Olfr51 11 51006974 to 51007897 923 + protein coding gene olfactory receptor 51
Olfr54 11 51027004 to 51027945 941 + protein coding gene olfactory receptor 54
Olfr1375 11 51048109 to 51049050 941 + protein coding gene olfactory receptor 1375
Cpgi2831 11 51059183 to 51059717 534 CpG island CpG island 2831
Tssr101270 11 51059231 to 51059307 76 + TSS region transcription start site region 101270
Zfp354a 11 51059257 to 51072799 13542 + protein coding gene zinc finger protein 354A
9230009I02Rik 11 51085087 to 51091833 6746 + lincRNA gene RIKEN cDNA 9230009I02 gene
Gm12201 11 51106631 to 51107869 1238 + pseudogene predicted gene 12201
Gm12202 11 51110562 to 51113211 2649 - pseudogene predicted gene 12202
Olfr1374-ps1 11 51142532 to 51143164 632 + pseudogene olfactory receptor 1374, pseudogene 1
Gm12203 11 51175225 to 51175822 597 - pseudogene predicted gene 12203
Cpgi2832 11 51177201 to 51177424 223 CpG island CpG island 2832
Platr20 11 51189833 to 51220418 30585 - lincRNA gene pluripotency associated transcript 20
Tssr107790 11 51220408 to 51220443 35 - TSS region transcription start site region 107790
Gm12569 11 51220473 to 51235053 14580 + protein coding gene predicted gene 12569
Tssr101271 11 51220560 to 51220586 26 + TSS region transcription start site region 101271
Tssr101272 11 51238411 to 51238418 7 + TSS region transcription start site region 101272
BC049762 11 51253651 to 51263046 9395 - protein coding gene cDNA sequence BC049762
Tssr101273 11 51261719 to 51261731 12 + TSS region transcription start site region 101273
Tssr101274 11 51262549 to 51262576 27 + TSS region transcription start site region 101274
Cpgi2833 11 51262618 to 51263856 1238 CpG island CpG island 2833
Tssr107791 11 51262796 to 51262809 13 - TSS region transcription start site region 107791
Tssr107792 11 51262940 to 51262968 28 - TSS region transcription start site region 107792
Tssr101275 11 51262945 to 51262954 9 + TSS region transcription start site region 101275
Tssr107793 11 51262988 to 51263012 24 - TSS region transcription start site region 107793
Tssr107794 11 51263017 to 51263035 18 - TSS region transcription start site region 107794
Tssr107795 11 51263042 to 51263061 19 - TSS region transcription start site region 107795
Clk4 11 51263114 to 51281770 18656 + protein coding gene CDC like kinase 4
Tssr101276 11 51263121 to 51263197 76 + TSS region transcription start site region 101276
Gm25082 11 51270435 to 51270689 254 + unclassified non-coding RNA gene predicted gene, 25082
Cpgi2834 11 51289598 to 51290930 1332 CpG island CpG island 2834
Tssr101277 11 51289738 to 51289754 16 + TSS region transcription start site region 101277
Col23a1 11 51289920 to 51583918 293998 + protein coding gene collagen, type XXIII, alpha 1
Tssr101278 11 51289968 to 51290011 43 + TSS region transcription start site region 101278
Tssr101279 11 51384178 to 51384189 11 + TSS region transcription start site region 101279
D11Jcs12 11 51540228 to 51540484 256 DNA segment DNA segment, Chr 11, John C. Schimenti 12
Tcpm1 11 51561652 to 53725103 2163451 QTL T cell phenotype modifier 1
D11Mit314 11 51561652 to 51561775 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 314
Tssr101280 11 51577888 to 51577894 6 + TSS region transcription start site region 101280
Tssr107796 11 51578543 to 51578557 14 - TSS region transcription start site region 107796
Cpgi2835 11 51584391 to 51585436 1045 CpG island CpG island 2835
Phykpl 11 51584540 to 51603271 18731 + protein coding gene 5-phosphohydroxy-L-lysine phospholyase
Tssr107797 11 51584641 to 51584687 46 - TSS region transcription start site region 107797
Tssr101281 11 51584759 to 51584821 62 + TSS region transcription start site region 101281
Hnrnpab 11 51600100 to 51606847 6747 - protein coding gene heterogeneous nuclear ribonucleoprotein A/B
Tssr107798 11 51601269 to 51601314 45 - TSS region transcription start site region 107798
Tssr107799 11 51601796 to 51601816 20 - TSS region transcription start site region 107799
Tssr107800 11 51602621 to 51602639 18 - TSS region transcription start site region 107800
Tssr107801 11 51604456 to 51604487 31 - TSS region transcription start site region 107801
Tssr107802 11 51605121 to 51605125 4 - TSS region transcription start site region 107802
Tssr107803 11 51605486 to 51605508 22 - TSS region transcription start site region 107803
Tssr101282 11 51605589 to 51605609 20 + TSS region transcription start site region 101282
Tssr107804 11 51605622 to 51605636 14 - TSS region transcription start site region 107804
Cpgi2836 11 51605698 to 51607386 1688 CpG island CpG island 2836
Tssr101283 11 51606330 to 51606355 25 + TSS region transcription start site region 101283
Tssr107805 11 51606590 to 51606595 5 - TSS region transcription start site region 107805
Tssr107806 11 51606840 to 51606857 17 - TSS region transcription start site region 107806
Tssr107807 11 51606867 to 51606885 18 - TSS region transcription start site region 107807
Tssr107808 11 51606890 to 51606895 5 - TSS region transcription start site region 107808
Tssr101284 11 51607006 to 51607041 35 + TSS region transcription start site region 101284
Tssr107809 11 51615729 to 51615765 36 - TSS region transcription start site region 107809
Cpgi2837 11 51619493 to 51620154 661 CpG island CpG island 2837
Tssr101285 11 51619707 to 51619714 7 + TSS region transcription start site region 101285
Tssr101286 11 51619731 to 51619813 82 + TSS region transcription start site region 101286
Nhp2 11 51619773 to 51623714 3941 + protein coding gene NHP2 ribonucleoprotein
Rmnd5b 11 51623673 to 51635896 12223 - protein coding gene required for meiotic nuclear division 5 homolog B
Cpgi2838 11 51635462 to 51636142 680 CpG island CpG island 2838
Tssr107810 11 51635722 to 51635784 62 - TSS region transcription start site region 107810
Tssr107811 11 51635848 to 51635859 11 - TSS region transcription start site region 107811
Tssr107812 11 51635870 to 51635891 21 - TSS region transcription start site region 107812
Tssr101287 11 51636055 to 51636076 21 + TSS region transcription start site region 101287
Tssr107813 11 51637964 to 51637984 20 - TSS region transcription start site region 107813
4833419E13Rik 11 51638887 to 51640335 1448 unclassified gene RIKEN cDNA 4833419E13 gene
N4bp3 11 51643063 to 51650842 7779 - protein coding gene NEDD4 binding protein 3
Tssr3488 11 51644325 to 51644328 3 + TSS region transcription start site region 3488
Tssr107814 11 51644341 to 51644352 11 - TSS region transcription start site region 107814
Tssr107815 11 51644367 to 51644391 24 - TSS region transcription start site region 107815
Tssr107816 11 51644393 to 51644403 10 - TSS region transcription start site region 107816
Cpgi2839 11 51650050 to 51651298 1248 CpG island CpG island 2839
Tssr107817 11 51650754 to 51650764 10 - TSS region transcription start site region 107817
Tssr107818 11 51650784 to 51650810 26 - TSS region transcription start site region 107818
Tssr107819 11 51650813 to 51650851 38 - TSS region transcription start site region 107819
Tssr107820 11 51650858 to 51650877 19 - TSS region transcription start site region 107820
Tssr101288 11 51650901 to 51650995 94 + TSS region transcription start site region 101288
D930048N14Rik 11 51650954 to 51657681 6727 + protein coding gene RIKEN cDNA D930048N14 gene
Tssr107821 11 51651031 to 51651046 15 - TSS region transcription start site region 107821
Gm30058 11 51652090 to 51657090 5000 - lncRNA gene predicted gene, 30058