Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:50887649-53047709

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342 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2827 11 50887313 to 50887692 379 CpG island CpG island 2827
Zfp2 11 50898712 to 50916165 17453 - protein coding gene zinc finger protein 2
Cpgi2828 11 50915669 to 50916296 627 CpG island CpG island 2828
Tssr107784 11 50916136 to 50916179 43 - TSS region transcription start site region 107784
Zfp354b 11 50921823 to 50931633 9810 - protein coding gene zinc finger protein 354B
Cpgi2829 11 50930997 to 50931585 588 CpG island CpG island 2829
Tssr107785 11 50931612 to 50931642 30 - TSS region transcription start site region 107785
4933414I15Rik 11 50940819 to 50943833 3014 - protein coding gene RIKEN cDNA 4933414I15 gene
Tssr107786 11 50943713 to 50943756 43 - TSS region transcription start site region 107786
Tssr107787 11 50943761 to 50943765 4 - TSS region transcription start site region 107787
Tssr107788 11 50943770 to 50943775 5 - TSS region transcription start site region 107788
4930428B07Rik 11 50943880 to 50944529 649 unclassified gene RIKEN cDNA 4930428B07 gene
Prop1 11 50950806 to 50953632 2826 - protein coding gene paired like homeodomain factor 1
Cpgi2830 11 50952150 to 50952465 315 CpG island CpG island 2830
Tssr107789 11 50953745 to 50953768 23 - TSS region transcription start site region 107789
Olfr1379-ps1 11 50959009 to 50959948 939 + pseudogene olfactory receptor 1379, pseudogene 1
Olfr1378 11 50969020 to 50969967 947 + protein coding gene olfactory receptor 1378
Gm12661 11 50977313 to 50980064 2751 + pseudogene predicted gene 12661
Olfr1377 11 50984703 to 50985626 923 + protein coding gene olfactory receptor 1377
Olfr1376-ps1 11 50991806 to 50992712 906 + pseudogene olfactory receptor 1376, pseudogene 1
Olfr51 11 51006974 to 51007897 923 + protein coding gene olfactory receptor 51
Olfr54 11 51027004 to 51027945 941 + protein coding gene olfactory receptor 54
Olfr1375 11 51048109 to 51049050 941 + protein coding gene olfactory receptor 1375
Cpgi2831 11 51059183 to 51059717 534 CpG island CpG island 2831
Tssr101270 11 51059231 to 51059307 76 + TSS region transcription start site region 101270
Zfp354a 11 51059257 to 51072799 13542 + protein coding gene zinc finger protein 354A
9230009I02Rik 11 51085087 to 51091833 6746 + lincRNA gene RIKEN cDNA 9230009I02 gene
Gm12201 11 51106631 to 51107869 1238 + pseudogene predicted gene 12201
Gm12202 11 51110562 to 51113211 2649 - pseudogene predicted gene 12202
Olfr1374-ps1 11 51142532 to 51143164 632 + pseudogene olfactory receptor 1374, pseudogene 1
Gm12203 11 51175225 to 51175822 597 - pseudogene predicted gene 12203
Cpgi2832 11 51177201 to 51177424 223 CpG island CpG island 2832
Platr20 11 51189833 to 51220418 30585 - lincRNA gene pluripotency associated transcript 20
Tssr107790 11 51220408 to 51220443 35 - TSS region transcription start site region 107790
Gm12569 11 51220473 to 51235053 14580 + protein coding gene predicted gene 12569
Tssr101271 11 51220560 to 51220586 26 + TSS region transcription start site region 101271
Tssr101272 11 51238411 to 51238418 7 + TSS region transcription start site region 101272
BC049762 11 51253651 to 51263046 9395 - protein coding gene cDNA sequence BC049762
Tssr101273 11 51261719 to 51261731 12 + TSS region transcription start site region 101273
Tssr101274 11 51262549 to 51262576 27 + TSS region transcription start site region 101274
Cpgi2833 11 51262618 to 51263856 1238 CpG island CpG island 2833
Tssr107791 11 51262796 to 51262809 13 - TSS region transcription start site region 107791
Tssr107792 11 51262940 to 51262968 28 - TSS region transcription start site region 107792
Tssr101275 11 51262945 to 51262954 9 + TSS region transcription start site region 101275
Tssr107793 11 51262988 to 51263012 24 - TSS region transcription start site region 107793
Tssr107794 11 51263017 to 51263035 18 - TSS region transcription start site region 107794
Tssr107795 11 51263042 to 51263061 19 - TSS region transcription start site region 107795
Clk4 11 51263114 to 51281770 18656 + protein coding gene CDC like kinase 4
Tssr101276 11 51263121 to 51263197 76 + TSS region transcription start site region 101276
Gm25082 11 51270435 to 51270689 254 + unclassified non-coding RNA gene predicted gene, 25082
Cpgi2834 11 51289598 to 51290930 1332 CpG island CpG island 2834
Tssr101277 11 51289738 to 51289754 16 + TSS region transcription start site region 101277
Col23a1 11 51289920 to 51583918 293998 + protein coding gene collagen, type XXIII, alpha 1
Tssr101278 11 51289968 to 51290011 43 + TSS region transcription start site region 101278
Tssr101279 11 51384178 to 51384189 11 + TSS region transcription start site region 101279
D11Jcs12 11 51540228 to 51540484 256 DNA segment DNA segment, Chr 11, John C. Schimenti 12
D11Mit314 11 51561652 to 51561775 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 314
Tcpm1 11 51561652 to 53725103 2163451 QTL T cell phenotype modifier 1
Tssr101280 11 51577888 to 51577894 6 + TSS region transcription start site region 101280
Tssr107796 11 51578543 to 51578557 14 - TSS region transcription start site region 107796
Cpgi2835 11 51584391 to 51585436 1045 CpG island CpG island 2835
Phykpl 11 51584540 to 51603271 18731 + protein coding gene 5-phosphohydroxy-L-lysine phospholyase
Tssr107797 11 51584641 to 51584687 46 - TSS region transcription start site region 107797
Tssr101281 11 51584759 to 51584821 62 + TSS region transcription start site region 101281
Hnrnpab 11 51600100 to 51606847 6747 - protein coding gene heterogeneous nuclear ribonucleoprotein A/B
Tssr107798 11 51601269 to 51601314 45 - TSS region transcription start site region 107798
Tssr107799 11 51601796 to 51601816 20 - TSS region transcription start site region 107799
Tssr107800 11 51602621 to 51602639 18 - TSS region transcription start site region 107800
Tssr107801 11 51604456 to 51604487 31 - TSS region transcription start site region 107801
Tssr107802 11 51605121 to 51605125 4 - TSS region transcription start site region 107802
Tssr107803 11 51605486 to 51605508 22 - TSS region transcription start site region 107803
Tssr101282 11 51605589 to 51605609 20 + TSS region transcription start site region 101282
Tssr107804 11 51605622 to 51605636 14 - TSS region transcription start site region 107804
Cpgi2836 11 51605698 to 51607386 1688 CpG island CpG island 2836
Tssr101283 11 51606330 to 51606355 25 + TSS region transcription start site region 101283
Tssr107805 11 51606590 to 51606595 5 - TSS region transcription start site region 107805
Tssr107806 11 51606840 to 51606857 17 - TSS region transcription start site region 107806
Tssr107807 11 51606867 to 51606885 18 - TSS region transcription start site region 107807
Tssr107808 11 51606890 to 51606895 5 - TSS region transcription start site region 107808
Tssr101284 11 51607006 to 51607041 35 + TSS region transcription start site region 101284
Tssr107809 11 51615729 to 51615765 36 - TSS region transcription start site region 107809
Cpgi2837 11 51619493 to 51620154 661 CpG island CpG island 2837
Tssr101285 11 51619707 to 51619714 7 + TSS region transcription start site region 101285
Tssr101286 11 51619731 to 51619813 82 + TSS region transcription start site region 101286
Nhp2 11 51619773 to 51623714 3941 + protein coding gene NHP2 ribonucleoprotein
Rmnd5b 11 51623673 to 51635896 12223 - protein coding gene required for meiotic nuclear division 5 homolog B
Cpgi2838 11 51635462 to 51636142 680 CpG island CpG island 2838
Tssr107810 11 51635722 to 51635784 62 - TSS region transcription start site region 107810
Tssr107811 11 51635848 to 51635859 11 - TSS region transcription start site region 107811
Tssr107812 11 51635870 to 51635891 21 - TSS region transcription start site region 107812
Tssr101287 11 51636055 to 51636076 21 + TSS region transcription start site region 101287
Tssr107813 11 51637964 to 51637984 20 - TSS region transcription start site region 107813
4833419E13Rik 11 51638887 to 51640335 1448 unclassified gene RIKEN cDNA 4833419E13 gene
N4bp3 11 51643063 to 51650842 7779 - protein coding gene NEDD4 binding protein 3
Tssr3488 11 51644325 to 51644328 3 + TSS region transcription start site region 3488
Tssr107814 11 51644341 to 51644352 11 - TSS region transcription start site region 107814
Tssr107815 11 51644367 to 51644391 24 - TSS region transcription start site region 107815
Tssr107816 11 51644393 to 51644403 10 - TSS region transcription start site region 107816
Cpgi2839 11 51650050 to 51651298 1248 CpG island CpG island 2839
Tssr107817 11 51650754 to 51650764 10 - TSS region transcription start site region 107817
Tssr107818 11 51650784 to 51650810 26 - TSS region transcription start site region 107818
Tssr107819 11 51650813 to 51650851 38 - TSS region transcription start site region 107819
Tssr107820 11 51650858 to 51650877 19 - TSS region transcription start site region 107820
Tssr101288 11 51650901 to 51650995 94 + TSS region transcription start site region 101288
D930048N14Rik 11 51650954 to 51657681 6727 + protein coding gene RIKEN cDNA D930048N14 gene
Tssr107821 11 51651031 to 51651046 15 - TSS region transcription start site region 107821
Gm30058 11 51652090 to 51657090 5000 - lncRNA gene predicted gene, 30058
0610009B22Rik 11 51685386 to 51688874 3488 - protein coding gene RIKEN cDNA 0610009B22 gene
Cpgi2840 11 51688469 to 51689299 830 CpG island CpG island 2840
Tssr107822 11 51688503 to 51688514 11 - TSS region transcription start site region 107822
Tssr107823 11 51688614 to 51688669 55 - TSS region transcription start site region 107823
Sec24a 11 51692263 to 51757280 65017 - protein coding gene Sec24 related gene family, member A (S. cerevisiae)
Tssr107824 11 51693098 to 51693142 44 - TSS region transcription start site region 107824
Tssr107825 11 51693462 to 51693466 4 - TSS region transcription start site region 107825
Gm25291 11 51737779 to 51737922 143 - snoRNA gene predicted gene, 25291
Tssr3489 11 51755656 to 51755666 10 - TSS region transcription start site region 3489
Cpgi2841 11 51755709 to 51757099 1390 CpG island CpG island 2841
Tssr101289 11 51755941 to 51755944 3 + TSS region transcription start site region 101289
Tssr107826 11 51756378 to 51756493 115 - TSS region transcription start site region 107826
Cpgi2842 11 51763560 to 51764084 524 CpG island CpG island 2842
Tssr107827 11 51763596 to 51763637 41 - TSS region transcription start site region 107827
Tssr101290 11 51763654 to 51763669 15 + TSS region transcription start site region 101290
Tssr101291 11 51763682 to 51763749 67 + TSS region transcription start site region 101291
Sar1b 11 51763687 to 51791925 28238 + protein coding gene secretion associated Ras related GTPase 1B
Jade2 11 51813455 to 51857653 44198 - protein coding gene jade family PHD finger 2
Tssr107828 11 51833520 to 51833547 27 - TSS region transcription start site region 107828
Tssr107829 11 51834078 to 51834084 6 - TSS region transcription start site region 107829
Gm30110 11 51855510 to 51856597 1087 + lncRNA gene predicted gene, 30110
Cpgi2843 11 51855559 to 51858689 3130 CpG island CpG island 2843
Tssr107830 11 51857089 to 51857110 21 - TSS region transcription start site region 107830
Tssr107831 11 51857599 to 51857610 11 - TSS region transcription start site region 107831
Tssr107832 11 51857624 to 51857686 62 - TSS region transcription start site region 107832
Tssr107833 11 51857988 to 51858043 55 - TSS region transcription start site region 107833
Cpgi2844 11 51858740 to 51859146 406 CpG island CpG island 2844
Gm39820 11 51862017 to 51869812 7795 - lncRNA gene predicted gene, 39820
Tssr107834 11 51874997 to 51875000 3 - TSS region transcription start site region 107834
Tssr101292 11 51876085 to 51876110 25 + TSS region transcription start site region 101292
Tssr101293 11 51884007 to 51884014 7 + TSS region transcription start site region 101293
Gm39821 11 51884029 to 51889041 5012 + lncRNA gene predicted gene, 39821
Tssr101294 11 51884073 to 51884121 48 + TSS region transcription start site region 101294
Tssr101295 11 51884139 to 51884147 8 + TSS region transcription start site region 101295
Tssr101296 11 51884265 to 51884284 19 + TSS region transcription start site region 101296
Gm46281 11 51889060 to 51890280 1220 + lncRNA gene predicted gene, 46281
Gm39822 11 51898966 to 51909624 10658 + lincRNA gene predicted gene, 39822
Tssr101297 11 51915661 to 51915664 3 + TSS region transcription start site region 101297
Tssr101298 11 51915766 to 51915774 8 + TSS region transcription start site region 101298
Tssr101299 11 51916906 to 51916919 13 + TSS region transcription start site region 101299
Tssr107835 11 51931855 to 51931870 15 - TSS region transcription start site region 107835
Gm26551 11 51949882 to 52269514 319632 - lincRNA gene predicted gene, 26551
Tssr107836 11 51950086 to 51950122 36 - TSS region transcription start site region 107836
Tssr101300 11 51961345 to 51961352 7 + TSS region transcription start site region 101300
Gm26061 11 51964382 to 51964489 107 + snRNA gene predicted gene, 26061
Cpgi2845 11 51967228 to 51968297 1069 CpG island CpG island 2845
Tssr101301 11 51967649 to 51967709 60 + TSS region transcription start site region 101301
Cdkn2aipnl 11 51967661 to 51977334 9673 + protein coding gene CDKN2A interacting protein N-terminal like
n-TAagc1 11 51976539 to 51976610 71 + tRNA gene nuclear encoded tRNA alanine 1 (anticodon AGC)
Ube2b 11 51985497 to 52000762 15265 - protein coding gene ubiquitin-conjugating enzyme E2B
5430406J06Rik 11 51993571 to 51994503 932 unclassified gene RIKEN cDNA 5430406J06 gene
Tssr107837 11 51997847 to 51997878 31 - TSS region transcription start site region 107837
Tssr107838 11 51998897 to 51998903 6 - TSS region transcription start site region 107838
Cpgi2846 11 51999731 to 52000944 1213 CpG island CpG island 2846
Tssr107839 11 52000356 to 52000388 32 - TSS region transcription start site region 107839
Tssr107840 11 52000410 to 52000428 18 - TSS region transcription start site region 107840
Tssr107841 11 52000432 to 52000475 43 - TSS region transcription start site region 107841
Tssr107842 11 52000721 to 52000744 23 - TSS region transcription start site region 107842
Tssr107843 11 52000748 to 52000775 27 - TSS region transcription start site region 107843
Tssr107844 11 52000780 to 52000794 14 - TSS region transcription start site region 107844
Gm12204 11 52000853 to 52001911 1058 + antisense lncRNA gene predicted gene 12204
Tssr101302 11 52000912 to 52000928 16 + TSS region transcription start site region 101302
Tssr101303 11 52000931 to 52000948 17 + TSS region transcription start site region 101303
Cpgi2847 11 52004052 to 52004568 516 CpG island CpG island 2847
Tssr101304 11 52004191 to 52004217 26 + TSS region transcription start site region 101304
Tssr101305 11 52004220 to 52004311 91 + TSS region transcription start site region 101305
Cdkl3 11 52004221 to 52089784 85563 + protein coding gene cyclin-dependent kinase-like 3
Tssr101306 11 52004313 to 52004335 22 + TSS region transcription start site region 101306
Tssr101307 11 52004340 to 52004366 26 + TSS region transcription start site region 101307
Gm12205 11 52038850 to 52039471 621 - antisense lncRNA gene predicted gene 12205
D11Mit154 11 52048521 to 52048633 112 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 154
Gm2769 11 52097305 to 52098824 1519 protein coding gene predicted gene 2769
Cpgi2848 11 52098124 to 52099731 1607 CpG island CpG island 2848
Tssr107845 11 52098515 to 52098533 18 - TSS region transcription start site region 107845
Tssr101308 11 52098785 to 52098796 11 + TSS region transcription start site region 101308
Tssr101309 11 52098802 to 52098813 11 + TSS region transcription start site region 101309
Tssr101310 11 52098815 to 52098842 27 + TSS region transcription start site region 101310
Ppp2ca 11 52098824 to 52122749 23925 + protein coding gene protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform
Tssr101311 11 52098852 to 52098875 23 + TSS region transcription start site region 101311
Gm24157 11 52099043 to 52099153 110 - miRNA gene predicted gene, 24157
Tssr107846 11 52099711 to 52099739 28 - TSS region transcription start site region 107846
Gm30631 11 52116311 to 52117008 697 - pseudogene predicted gene, 30631
Tssr101312 11 52117997 to 52118010 13 + TSS region transcription start site region 101312
Tssr101313 11 52120914 to 52120921 7 + TSS region transcription start site region 101313
Tssr107847 11 52120960 to 52120975 15 - TSS region transcription start site region 107847
Tssr101314 11 52121902 to 52121957 55 + TSS region transcription start site region 101314
Tssr101315 11 52122263 to 52122279 16 + TSS region transcription start site region 101315
Tssr101316 11 52122417 to 52122432 15 + TSS region transcription start site region 101316
9430098F02Rik 11 52124530 to 52127779 3249 - lincRNA gene RIKEN cDNA 9430098F02 gene
Mir3061 11 52126746 to 52126836 90 + miRNA gene microRNA 3061
Olfr1373 11 52144593 to 52145528 935 - protein coding gene olfactory receptor 1373
Olfr1372-ps1 11 52154876 to 52157907 3031 - pseudogene olfactory receptor 1372, pseudogene 1
Cpgi2849 11 52167144 to 52168440 1296 CpG island CpG island 2849