Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:50824833-51585418

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp354c 11 50811086 to 50827724 16638 - protein coding gene zinc finger protein 354C
Cpgi2822 11 50827099 to 50827962 863 CpG island CpG island 2822
Tssr107781 11 50827656 to 50827663 7 - TSS region transcription start site region 107781
Tssr107782 11 50827681 to 50827742 61 - TSS region transcription start site region 107782
Zfp879 11 50832031 to 50841552 9521 - protein coding gene zinc finger protein 879
Cpgi2823 11 50841366 to 50841590 224 CpG island CpG island 2823
Grm6 11 50850685 to 50866208 15523 + protein coding gene glutamate receptor, metabotropic 6
Cpgi2824 11 50850707 to 50851925 1218 CpG island CpG island 2824
Tssr101269 11 50850791 to 50850808 17 + TSS region transcription start site region 101269
Gm12660 11 50851332 to 50852582 1250 - antisense lncRNA gene predicted gene 12660
Cpgi2825 11 50859509 to 50860180 671 CpG island CpG island 2825
Cpgi2826 11 50864445 to 50864710 265 CpG island CpG island 2826
D11Pjn3 11 50866154 to 50866519 365 DNA segment DNA segment, Chr 11, Patsy J. Nishina 3
Zfp454 11 50872718 to 50887635 14917 - protein coding gene zinc finger protein 454
Cpgi2827 11 50887313 to 50887692 379 CpG island CpG island 2827
Tssr107783 11 50887463 to 50887525 62 - TSS region transcription start site region 107783
Zfp2 11 50898712 to 50916165 17453 - protein coding gene zinc finger protein 2
Cpgi2828 11 50915669 to 50916296 627 CpG island CpG island 2828
Tssr107784 11 50916136 to 50916179 43 - TSS region transcription start site region 107784
Zfp354b 11 50921823 to 50931633 9810 - protein coding gene zinc finger protein 354B
Cpgi2829 11 50930997 to 50931585 588 CpG island CpG island 2829
Tssr107785 11 50931612 to 50931642 30 - TSS region transcription start site region 107785
4933414I15Rik 11 50940819 to 50943833 3014 - protein coding gene RIKEN cDNA 4933414I15 gene
Tssr107786 11 50943713 to 50943756 43 - TSS region transcription start site region 107786
Tssr107787 11 50943761 to 50943765 4 - TSS region transcription start site region 107787
Tssr107788 11 50943770 to 50943775 5 - TSS region transcription start site region 107788
4930428B07Rik 11 50943880 to 50944529 649 unclassified gene RIKEN cDNA 4930428B07 gene
Prop1 11 50950806 to 50953632 2826 - protein coding gene paired like homeodomain factor 1
Cpgi2830 11 50952150 to 50952465 315 CpG island CpG island 2830
Tssr107789 11 50953745 to 50953768 23 - TSS region transcription start site region 107789
Olfr1379-ps1 11 50959009 to 50959948 939 + pseudogene olfactory receptor 1379, pseudogene 1
Olfr1378 11 50969020 to 50969967 947 + protein coding gene olfactory receptor 1378
Gm12661 11 50977313 to 50980064 2751 + pseudogene predicted gene 12661
Olfr1377 11 50984703 to 50985626 923 + protein coding gene olfactory receptor 1377
Olfr1376-ps1 11 50991806 to 50992712 906 + pseudogene olfactory receptor 1376, pseudogene 1
Olfr51 11 51006974 to 51007897 923 + protein coding gene olfactory receptor 51
Olfr54 11 51027004 to 51027945 941 + protein coding gene olfactory receptor 54
Olfr1375 11 51048109 to 51049050 941 + protein coding gene olfactory receptor 1375
Cpgi2831 11 51059183 to 51059717 534 CpG island CpG island 2831
Tssr101270 11 51059231 to 51059307 76 + TSS region transcription start site region 101270
Zfp354a 11 51059257 to 51072799 13542 + protein coding gene zinc finger protein 354A
9230009I02Rik 11 51085087 to 51091833 6746 + lincRNA gene RIKEN cDNA 9230009I02 gene
Gm12201 11 51106631 to 51107869 1238 + pseudogene predicted gene 12201
Gm12202 11 51110562 to 51113211 2649 - pseudogene predicted gene 12202
Olfr1374-ps1 11 51142532 to 51143164 632 + pseudogene olfactory receptor 1374, pseudogene 1
Gm12203 11 51175225 to 51175822 597 - pseudogene predicted gene 12203
Cpgi2832 11 51177201 to 51177424 223 CpG island CpG island 2832
Platr20 11 51189833 to 51220418 30585 - lincRNA gene pluripotency associated transcript 20
Tssr107790 11 51220408 to 51220443 35 - TSS region transcription start site region 107790
Gm12569 11 51220473 to 51235053 14580 + protein coding gene predicted gene 12569
Tssr101271 11 51220560 to 51220586 26 + TSS region transcription start site region 101271
Tssr101272 11 51238411 to 51238418 7 + TSS region transcription start site region 101272
BC049762 11 51253651 to 51263046 9395 - protein coding gene cDNA sequence BC049762
Tssr101273 11 51261719 to 51261731 12 + TSS region transcription start site region 101273
Tssr101274 11 51262549 to 51262576 27 + TSS region transcription start site region 101274
Cpgi2833 11 51262618 to 51263856 1238 CpG island CpG island 2833
Tssr107791 11 51262796 to 51262809 13 - TSS region transcription start site region 107791
Tssr107792 11 51262940 to 51262968 28 - TSS region transcription start site region 107792
Tssr101275 11 51262945 to 51262954 9 + TSS region transcription start site region 101275
Tssr107793 11 51262988 to 51263012 24 - TSS region transcription start site region 107793
Tssr107794 11 51263017 to 51263035 18 - TSS region transcription start site region 107794
Tssr107795 11 51263042 to 51263061 19 - TSS region transcription start site region 107795
Clk4 11 51263114 to 51281770 18656 + protein coding gene CDC like kinase 4
Tssr101276 11 51263121 to 51263197 76 + TSS region transcription start site region 101276
Gm25082 11 51270435 to 51270689 254 + unclassified non-coding RNA gene predicted gene, 25082
Cpgi2834 11 51289598 to 51290930 1332 CpG island CpG island 2834
Tssr101277 11 51289738 to 51289754 16 + TSS region transcription start site region 101277
Col23a1 11 51289920 to 51583918 293998 + protein coding gene collagen, type XXIII, alpha 1
Tssr101278 11 51289968 to 51290011 43 + TSS region transcription start site region 101278
Tssr101279 11 51384178 to 51384189 11 + TSS region transcription start site region 101279
D11Jcs12 11 51540228 to 51540484 256 DNA segment DNA segment, Chr 11, John C. Schimenti 12
D11Mit314 11 51561652 to 51561775 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 314
Tcpm1 11 51561652 to 53725103 2163451 QTL T cell phenotype modifier 1
Tssr101280 11 51577888 to 51577894 6 + TSS region transcription start site region 101280
Tssr107796 11 51578543 to 51578557 14 - TSS region transcription start site region 107796
Cpgi2835 11 51584391 to 51585436 1045 CpG island CpG island 2835
Phykpl 11 51584540 to 51603271 18731 + protein coding gene 5-phosphohydroxy-L-lysine phospholyase
Tssr107797 11 51584641 to 51584687 46 - TSS region transcription start site region 107797
Tssr101281 11 51584759 to 51584821 62 + TSS region transcription start site region 101281