Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:5081005-5311012

Filter by:
46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ewsr1 11 5069687 to 5099099 29412 - protein coding gene Ewing sarcoma breakpoint region 1
Cpgi2530 11 5098233 to 5100126 1893 CpG island CpG island 2530
Tssr106603 11 5098750 to 5098759 9 - TSS region transcription start site region 106603
Tssr100164 11 5098915 to 5098926 11 + TSS region transcription start site region 100164
Tssr106604 11 5099036 to 5099050 14 - TSS region transcription start site region 106604
Tssr106605 11 5099053 to 5099081 28 - TSS region transcription start site region 106605
Tssr106606 11 5099084 to 5099095 11 - TSS region transcription start site region 106606
Rhbdd3 11 5099187 to 5106100 6913 + protein coding gene rhomboid domain containing 3
Tssr106607 11 5099223 to 5099242 19 - TSS region transcription start site region 106607
Tssr100165 11 5099266 to 5099279 13 + TSS region transcription start site region 100165
Tssr106608 11 5099323 to 5099356 33 - TSS region transcription start site region 106608
Tssr100166 11 5099406 to 5099518 112 + TSS region transcription start site region 100166
Tssr100167 11 5099626 to 5099646 20 + TSS region transcription start site region 100167
Tssr100168 11 5099659 to 5099677 18 + TSS region transcription start site region 100168
Gm46267 11 5099967 to 5101417 1450 - lncRNA gene predicted gene, 46267
Tssr100169 11 5105177 to 5105187 10 + TSS region transcription start site region 100169
Tssr100170 11 5105214 to 5105221 7 + TSS region transcription start site region 100170
Emid1 11 5106265 to 5152257 45992 - protein coding gene EMI domain containing 1
Tssr106609 11 5110117 to 5110122 5 - TSS region transcription start site region 106609
Gm46266 11 5112392 to 5131907 19515 + lncRNA gene predicted gene, 46266
Tssr106610 11 5129220 to 5129260 40 - TSS region transcription start site region 106610
Gm39572 11 5136186 to 5137082 896 + lncRNA gene predicted gene, 39572
Tssr100171 11 5136238 to 5136254 16 + TSS region transcription start site region 100171
Tssr100172 11 5136258 to 5136283 25 + TSS region transcription start site region 100172
Tssr100173 11 5146570 to 5146618 48 + TSS region transcription start site region 100173
Tssr106611 11 5150062 to 5150094 32 - TSS region transcription start site region 106611
Cpgi2531 11 5151787 to 5152842 1055 CpG island CpG island 2531
Tssr106612 11 5152218 to 5152272 54 - TSS region transcription start site region 106612
Tssr106613 11 5177225 to 5177230 5 - TSS region transcription start site region 106613
D11Dcr3 11 5180568 to 5180681 113 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 3
Gm18478 11 5187863 to 5188467 604 + pseudogene predicted gene, 18478
Kremen1 11 5191552 to 5261558 70006 - protein coding gene kringle containing transmembrane protein 1
Tssr100174 11 5196005 to 5196012 7 + TSS region transcription start site region 100174
Tssr3418 11 5229795 to 5229807 12 - TSS region transcription start site region 3418
Gm25142 11 5251850 to 5251956 106 + snRNA gene predicted gene, 25142
Tssr106614 11 5253712 to 5253722 10 - TSS region transcription start site region 106614
Gm46268 11 5260481 to 5268799 8318 + lncRNA gene predicted gene, 46268
Cpgi2532 11 5260973 to 5262323 1350 CpG island CpG island 2532
Tssr106615 11 5261530 to 5261543 13 - TSS region transcription start site region 106615
Tssr106616 11 5261569 to 5261637 68 - TSS region transcription start site region 106616
Tssr106617 11 5261710 to 5261721 11 - TSS region transcription start site region 106617
Tssr106618 11 5261722 to 5261754 32 - TSS region transcription start site region 106618
Cpgi2533 11 5263071 to 5263362 291 CpG island CpG island 2533
Gm30172 11 5273921 to 5275926 2005 + protein coding gene predicted gene, 30172
Znrf3 11 5276329 to 5444847 168518 - protein coding gene zinc and ring finger 3
Tssr106619 11 5277561 to 5277567 6 - TSS region transcription start site region 106619