Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:50322072-50882094

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ogrq5 11 27248057 to 50745267 23497210 QTL overall growth rate QTL 5
Pwbwq14 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 14
Pwbwq15 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 15
Pwbwq16 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 16
Pwgrq20 11 27248057 to 50745267 23497210 QTL post-weaning growth rate QTL 20
Canx 11 50293961 to 50325673 31712 - protein coding gene calnexin
Cpgi2813 11 50325175 to 50326162 987 CpG island CpG island 2813
Tssr107767 11 50325579 to 50325589 10 - TSS region transcription start site region 107767
Tssr107768 11 50325599 to 50325666 67 - TSS region transcription start site region 107768
Gm46280 11 50325720 to 50327156 1436 + lncRNA gene predicted gene, 46280
Tssr101244 11 50325874 to 50325897 23 + TSS region transcription start site region 101244
Tssr101245 11 50325900 to 50325949 49 + TSS region transcription start site region 101245
Tssr107769 11 50326080 to 50326083 3 - TSS region transcription start site region 107769
Tssr107770 11 50326095 to 50326107 12 - TSS region transcription start site region 107770
Gm31865 11 50337265 to 50338267 1002 + pseudogene predicted gene, 31865
Gm12196 11 50347628 to 50347889 261 + pseudogene predicted gene 12196
Cby3 11 50354462 to 50359699 5237 + protein coding gene chibby family member 3
Tssr101246 11 50357759 to 50357773 14 + TSS region transcription start site region 101246
Mir804 11 50357785 to 50357879 94 - miRNA gene microRNA 804
Cpgi2814 11 50358905 to 50359873 968 CpG island CpG island 2814
Cpgi2815 11 50371459 to 50371732 273 CpG island CpG island 2815
Cpgi2816 11 50376806 to 50378881 2075 CpG island CpG island 2816
Tssr101247 11 50376911 to 50376924 13 + TSS region transcription start site region 101247
Tssr107771 11 50376958 to 50376967 9 - TSS region transcription start site region 107771
Tssr101248 11 50376982 to 50377004 22 + TSS region transcription start site region 101248
Tssr101249 11 50377013 to 50377024 11 + TSS region transcription start site region 101249
Tssr101250 11 50377047 to 50377063 16 + TSS region transcription start site region 101250
Tssr101251 11 50377069 to 50377086 17 + TSS region transcription start site region 101251
Tssr107772 11 50377603 to 50377647 44 - TSS region transcription start site region 107772
Hnrnph1 11 50377694 to 50386528 8834 + protein coding gene heterogeneous nuclear ribonucleoprotein H1
Tssr101252 11 50377757 to 50377779 22 + TSS region transcription start site region 101252
Tssr101253 11 50378010 to 50378046 36 + TSS region transcription start site region 101253
Tssr101254 11 50378372 to 50378388 16 + TSS region transcription start site region 101254
Tssr101255 11 50381504 to 50381552 48 + TSS region transcription start site region 101255
Tssr101256 11 50382793 to 50382816 23 + TSS region transcription start site region 101256
Tssr101257 11 50383016 to 50383028 12 + TSS region transcription start site region 101257
Rufy1 11 50389286 to 50431125 41839 - protein coding gene RUN and FYVE domain containing 1
Tssr107773 11 50408007 to 50408022 15 - TSS region transcription start site region 107773
Tssr107774 11 50415726 to 50415732 6 - TSS region transcription start site region 107774
Cpgi2817 11 50421843 to 50422071 228 CpG island CpG island 2817
Tssr107775 11 50422002 to 50422062 60 - TSS region transcription start site region 107775
Cpgi2818 11 50430327 to 50431702 1375 CpG island CpG island 2818
Tssr101258 11 50430387 to 50430426 39 + TSS region transcription start site region 101258
Tssr107776 11 50431101 to 50431131 30 - TSS region transcription start site region 107776
Tssr107777 11 50431288 to 50431321 33 - TSS region transcription start site region 107777
Gm23824 11 50510902 to 50511177 275 - unclassified non-coding RNA gene predicted gene, 23824
Tssr3487 11 50543871 to 50543875 4 + TSS region transcription start site region 3487
Gm36763 11 50544898 to 50547717 2819 + lncRNA gene predicted gene, 36763
Gm46259 11 50547780 to 50550704 2924 + lncRNA gene predicted gene, 46259
Tssr107778 11 50557087 to 50557103 16 - TSS region transcription start site region 107778
Gm12198 11 50599298 to 50602448 3150 - unclassified non-coding RNA gene predicted gene 12198
Cpgi2819 11 50601401 to 50603751 2350 CpG island CpG island 2819
Tssr101259 11 50602007 to 50602067 60 + TSS region transcription start site region 101259
Tssr101260 11 50602072 to 50602094 22 + TSS region transcription start site region 101260
Adamts2 11 50602085 to 50807573 205488 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2
Tssr101261 11 50602099 to 50602106 7 + TSS region transcription start site region 101261
Tssr101262 11 50603369 to 50603380 11 + TSS region transcription start site region 101262
Tssr101263 11 50611296 to 50611298 2 + TSS region transcription start site region 101263
Gm39819 11 50697889 to 50711567 13678 + lncRNA gene predicted gene, 39819
Gm12199 11 50717670 to 50718915 1245 - antisense lncRNA gene predicted gene 12199
Tssr107779 11 50718841 to 50718853 12 - TSS region transcription start site region 107779
Gm12200 11 50720082 to 50725544 5462 - antisense lncRNA gene predicted gene 12200
Tssr107780 11 50758167 to 50758198 31 - TSS region transcription start site region 107780
Tssr101264 11 50772213 to 50772214 1 + TSS region transcription start site region 101264
Tssr101265 11 50793615 to 50793628 13 + TSS region transcription start site region 101265
Tssr101266 11 50793712 to 50793729 17 + TSS region transcription start site region 101266
Tssr101267 11 50793932 to 50793982 50 + TSS region transcription start site region 101267
Cpgi2820 11 50796103 to 50796543 440 CpG island CpG island 2820
Cpgi2821 11 50796827 to 50797072 245 CpG island CpG island 2821
Gm23392 11 50809651 to 50809763 112 + rRNA gene predicted gene, 23392
Tssr101268 11 50810589 to 50810592 3 + TSS region transcription start site region 101268
Zfp354c 11 50811086 to 50827724 16638 - protein coding gene zinc finger protein 354C
Cpgi2822 11 50827099 to 50827962 863 CpG island CpG island 2822
Tssr107781 11 50827656 to 50827663 7 - TSS region transcription start site region 107781
Tssr107782 11 50827681 to 50827742 61 - TSS region transcription start site region 107782
Zfp879 11 50832031 to 50841552 9521 - protein coding gene zinc finger protein 879
Cpgi2823 11 50841366 to 50841590 224 CpG island CpG island 2823
Grm6 11 50850685 to 50866208 15523 + protein coding gene glutamate receptor, metabotropic 6
Cpgi2824 11 50850707 to 50851925 1218 CpG island CpG island 2824
Tssr101269 11 50850791 to 50850808 17 + TSS region transcription start site region 101269
Gm12660 11 50851332 to 50852582 1250 - antisense lncRNA gene predicted gene 12660
Cpgi2825 11 50859509 to 50860180 671 CpG island CpG island 2825
Cpgi2826 11 50864445 to 50864710 265 CpG island CpG island 2826
D11Pjn3 11 50866154 to 50866519 365 DNA segment DNA segment, Chr 11, Patsy J. Nishina 3
Zfp454 11 50872718 to 50887635 14917 - protein coding gene zinc finger protein 454