Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:50298871-50788875

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ogrq5 11 27248057 to 50745267 23497210 QTL overall growth rate QTL 5
Pwgrq20 11 27248057 to 50745267 23497210 QTL post-weaning growth rate QTL 20
Pwbwq16 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 16
Pwbwq15 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 15
Pwbwq14 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 14
Canx 11 50293961 to 50325673 31712 - protein coding gene calnexin
Tssr107752 11 50299152 to 50299225 73 - TSS region transcription start site region 107752
Tssr107753 11 50299235 to 50299269 34 - TSS region transcription start site region 107753
Tssr107754 11 50300927 to 50300943 16 - TSS region transcription start site region 107754
Tssr107755 11 50300950 to 50301012 62 - TSS region transcription start site region 107755
Tssr107756 11 50301016 to 50301031 15 - TSS region transcription start site region 107756
Tssr107757 11 50301788 to 50301827 39 - TSS region transcription start site region 107757
D11Pjn2 11 50306133 to 50306522 389 DNA segment DNA segment, Chr 11, Patsy J. Nishina 2
Tssr107758 11 50307567 to 50307624 57 - TSS region transcription start site region 107758
Tssr107759 11 50307641 to 50307671 30 - TSS region transcription start site region 107759
Tssr107760 11 50308816 to 50308831 15 - TSS region transcription start site region 107760
Tssr107761 11 50308850 to 50308863 13 - TSS region transcription start site region 107761
Tssr107762 11 50308866 to 50308891 25 - TSS region transcription start site region 107762
Tssr107763 11 50310408 to 50310435 27 - TSS region transcription start site region 107763
Tssr107764 11 50310820 to 50310842 22 - TSS region transcription start site region 107764
Tssr107765 11 50311735 to 50311780 45 - TSS region transcription start site region 107765
Tssr107766 11 50313617 to 50313630 13 - TSS region transcription start site region 107766
Cpgi2813 11 50325175 to 50326162 987 CpG island CpG island 2813
Tssr107767 11 50325579 to 50325589 10 - TSS region transcription start site region 107767
Tssr107768 11 50325599 to 50325666 67 - TSS region transcription start site region 107768
Gm46280 11 50325720 to 50327156 1436 + lncRNA gene predicted gene, 46280
Tssr101244 11 50325874 to 50325897 23 + TSS region transcription start site region 101244
Tssr101245 11 50325900 to 50325949 49 + TSS region transcription start site region 101245
Tssr107769 11 50326080 to 50326083 3 - TSS region transcription start site region 107769
Tssr107770 11 50326095 to 50326107 12 - TSS region transcription start site region 107770
Gm31865 11 50337265 to 50338267 1002 + pseudogene predicted gene, 31865
Gm12196 11 50347628 to 50347889 261 + pseudogene predicted gene 12196
Cby3 11 50354462 to 50359699 5237 + protein coding gene chibby family member 3
Tssr101246 11 50357759 to 50357773 14 + TSS region transcription start site region 101246
Mir804 11 50357785 to 50357879 94 - miRNA gene microRNA 804
Cpgi2814 11 50358905 to 50359873 968 CpG island CpG island 2814
Cpgi2815 11 50371459 to 50371732 273 CpG island CpG island 2815
Cpgi2816 11 50376806 to 50378881 2075 CpG island CpG island 2816
Tssr101247 11 50376911 to 50376924 13 + TSS region transcription start site region 101247
Tssr107771 11 50376958 to 50376967 9 - TSS region transcription start site region 107771
Tssr101248 11 50376982 to 50377004 22 + TSS region transcription start site region 101248
Tssr101249 11 50377013 to 50377024 11 + TSS region transcription start site region 101249
Tssr101250 11 50377047 to 50377063 16 + TSS region transcription start site region 101250
Tssr101251 11 50377069 to 50377086 17 + TSS region transcription start site region 101251
Tssr107772 11 50377603 to 50377647 44 - TSS region transcription start site region 107772
Hnrnph1 11 50377694 to 50386528 8834 + protein coding gene heterogeneous nuclear ribonucleoprotein H1
Tssr101252 11 50377757 to 50377779 22 + TSS region transcription start site region 101252
Tssr101253 11 50378010 to 50378046 36 + TSS region transcription start site region 101253
Tssr101254 11 50378372 to 50378388 16 + TSS region transcription start site region 101254
Tssr101255 11 50381504 to 50381552 48 + TSS region transcription start site region 101255
Tssr101256 11 50382793 to 50382816 23 + TSS region transcription start site region 101256
Tssr101257 11 50383016 to 50383028 12 + TSS region transcription start site region 101257
Rufy1 11 50389286 to 50431125 41839 - protein coding gene RUN and FYVE domain containing 1
Tssr107773 11 50408007 to 50408022 15 - TSS region transcription start site region 107773
Tssr107774 11 50415726 to 50415732 6 - TSS region transcription start site region 107774
Cpgi2817 11 50421843 to 50422071 228 CpG island CpG island 2817
Tssr107775 11 50422002 to 50422062 60 - TSS region transcription start site region 107775
Cpgi2818 11 50430327 to 50431702 1375 CpG island CpG island 2818
Tssr101258 11 50430387 to 50430426 39 + TSS region transcription start site region 101258
Tssr107776 11 50431101 to 50431131 30 - TSS region transcription start site region 107776
Tssr107777 11 50431288 to 50431321 33 - TSS region transcription start site region 107777
Gm23824 11 50510902 to 50511177 275 - unclassified non-coding RNA gene predicted gene, 23824
Tssr3487 11 50543871 to 50543875 4 + TSS region transcription start site region 3487
Gm36763 11 50544898 to 50547717 2819 + lncRNA gene predicted gene, 36763
Gm46259 11 50547780 to 50550704 2924 + lncRNA gene predicted gene, 46259
Tssr107778 11 50557087 to 50557103 16 - TSS region transcription start site region 107778
Gm12198 11 50599298 to 50602448 3150 - unclassified non-coding RNA gene predicted gene 12198
Cpgi2819 11 50601401 to 50603751 2350 CpG island CpG island 2819
Tssr101259 11 50602007 to 50602067 60 + TSS region transcription start site region 101259
Tssr101260 11 50602072 to 50602094 22 + TSS region transcription start site region 101260
Adamts2 11 50602085 to 50807573 205488 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2
Tssr101261 11 50602099 to 50602106 7 + TSS region transcription start site region 101261
Tssr101262 11 50603369 to 50603380 11 + TSS region transcription start site region 101262
Tssr101263 11 50611296 to 50611298 2 + TSS region transcription start site region 101263
Gm39819 11 50697889 to 50711567 13678 + lncRNA gene predicted gene, 39819
Gm12199 11 50717670 to 50718915 1245 - antisense lncRNA gene predicted gene 12199
Tssr107779 11 50718841 to 50718853 12 - TSS region transcription start site region 107779
Gm12200 11 50720082 to 50725544 5462 - antisense lncRNA gene predicted gene 12200
Tssr107780 11 50758167 to 50758198 31 - TSS region transcription start site region 107780
Tssr101264 11 50772213 to 50772214 1 + TSS region transcription start site region 101264