Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:50206133-50406522

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sqstm1 11 50200152 to 50210820 10668 - protein coding gene sequestosome 1
Tssr107727 11 50207180 to 50207197 17 - TSS region transcription start site region 107727
Tssr107728 11 50207202 to 50207242 40 - TSS region transcription start site region 107728
Tssr107729 11 50207249 to 50207262 13 - TSS region transcription start site region 107729
Tssr107730 11 50207446 to 50207476 30 - TSS region transcription start site region 107730
Tssr101226 11 50207458 to 50207479 21 + TSS region transcription start site region 101226
Tssr107731 11 50207522 to 50207558 36 - TSS region transcription start site region 107731
Tssr107732 11 50207565 to 50207576 11 - TSS region transcription start site region 107732
Tssr107733 11 50207577 to 50207597 20 - TSS region transcription start site region 107733
Tssr107734 11 50207606 to 50207637 31 - TSS region transcription start site region 107734
Tssr107735 11 50207864 to 50207889 25 - TSS region transcription start site region 107735
Tssr107736 11 50207897 to 50207909 12 - TSS region transcription start site region 107736
Tssr107737 11 50209454 to 50209482 28 - TSS region transcription start site region 107737
Cpgi2806 11 50210200 to 50211107 907 CpG island CpG island 2806
Tssr101227 11 50210305 to 50210383 78 + TSS region transcription start site region 101227
Tssr107738 11 50210788 to 50210793 5 - TSS region transcription start site region 107738
Tssr101228 11 50210944 to 50210958 14 + TSS region transcription start site region 101228
Tssr107739 11 50212047 to 50212058 11 - TSS region transcription start site region 107739
Tssr101229 11 50213292 to 50213304 12 + TSS region transcription start site region 101229
Tssr107740 11 50217800 to 50217845 45 - TSS region transcription start site region 107740
Gm36556 11 50218719 to 50225211 6492 - lncRNA gene predicted gene, 36556
Cpgi2807 11 50224605 to 50226187 1582 CpG island CpG island 2807
Tssr107741 11 50224632 to 50224641 9 - TSS region transcription start site region 107741
Tssr101230 11 50224748 to 50224760 12 + TSS region transcription start site region 101230
Tssr101231 11 50225068 to 50225087 19 + TSS region transcription start site region 101231
Tssr101232 11 50225308 to 50225311 3 + TSS region transcription start site region 101232
Tssr101233 11 50225315 to 50225429 114 + TSS region transcription start site region 101233
Mgat4b 11 50225335 to 50235103 9768 + protein coding gene mannoside acetylglucosaminyltransferase 4, isoenzyme B
Tssr101234 11 50225475 to 50225492 17 + TSS region transcription start site region 101234
Tssr101235 11 50230690 to 50230733 43 + TSS region transcription start site region 101235
Cpgi2808 11 50230718 to 50231350 632 CpG island CpG island 2808
Tssr101236 11 50232051 to 50232076 25 + TSS region transcription start site region 101236
Mir6919 11 50232245 to 50232306 61 + miRNA gene microRNA 6919
Cpgi2809 11 50234661 to 50234846 185 CpG island CpG island 2809
Cpgi2810 11 50236364 to 50237811 1447 CpG island CpG island 2810
Ltc4s 11 50236461 to 50238532 2071 - protein coding gene leukotriene C4 synthase
Tssr101237 11 50236850 to 50236870 20 + TSS region transcription start site region 101237
Tssr101238 11 50236887 to 50236917 30 + TSS region transcription start site region 101238
Gm26542 11 50236953 to 50288839 51886 + antisense lncRNA gene predicted gene, 26542
Tssr101239 11 50237002 to 50237014 12 + TSS region transcription start site region 101239
Tssr107742 11 50238451 to 50238469 18 - TSS region transcription start site region 107742
Tssr107743 11 50238480 to 50238522 42 - TSS region transcription start site region 107743
Tssr101240 11 50252438 to 50252454 16 + TSS region transcription start site region 101240
Tssr107744 11 50252854 to 50252864 10 - TSS region transcription start site region 107744
Cpgi2811 11 50254057 to 50254274 217 CpG island CpG island 2811
Maml1 11 50255634 to 50292311 36677 - protein coding gene mastermind like transcriptional coactivator 1
Tssr107745 11 50278680 to 50278683 3 - TSS region transcription start site region 107745
Tssr101241 11 50291117 to 50291136 19 + TSS region transcription start site region 101241
Cpgi2812 11 50291335 to 50292606 1271 CpG island CpG island 2812
Tssr107746 11 50292302 to 50292363 61 - TSS region transcription start site region 107746
Tssr101242 11 50292470 to 50292516 46 + TSS region transcription start site region 101242
Canx 11 50293961 to 50325673 31712 - protein coding gene calnexin
Tssr107747 11 50295941 to 50295956 15 - TSS region transcription start site region 107747
Tssr107748 11 50296000 to 50296073 73 - TSS region transcription start site region 107748
Tssr107749 11 50296202 to 50296213 11 - TSS region transcription start site region 107749
Tssr107750 11 50298163 to 50298212 49 - TSS region transcription start site region 107750
Tssr101243 11 50298163 to 50298187 24 + TSS region transcription start site region 101243
Tssr107751 11 50298218 to 50298248 30 - TSS region transcription start site region 107751
Tssr107752 11 50299152 to 50299225 73 - TSS region transcription start site region 107752
Tssr107753 11 50299235 to 50299269 34 - TSS region transcription start site region 107753
Tssr107754 11 50300927 to 50300943 16 - TSS region transcription start site region 107754
Tssr107755 11 50300950 to 50301012 62 - TSS region transcription start site region 107755
Tssr107756 11 50301016 to 50301031 15 - TSS region transcription start site region 107756
Tssr107757 11 50301788 to 50301827 39 - TSS region transcription start site region 107757
D11Pjn2 11 50306133 to 50306522 389 DNA segment DNA segment, Chr 11, Patsy J. Nishina 2
Tssr107758 11 50307567 to 50307624 57 - TSS region transcription start site region 107758
Tssr107759 11 50307641 to 50307671 30 - TSS region transcription start site region 107759
Tssr107760 11 50308816 to 50308831 15 - TSS region transcription start site region 107760
Tssr107761 11 50308850 to 50308863 13 - TSS region transcription start site region 107761
Tssr107762 11 50308866 to 50308891 25 - TSS region transcription start site region 107762
Tssr107763 11 50310408 to 50310435 27 - TSS region transcription start site region 107763
Tssr107764 11 50310820 to 50310842 22 - TSS region transcription start site region 107764
Tssr107765 11 50311735 to 50311780 45 - TSS region transcription start site region 107765
Tssr107766 11 50313617 to 50313630 13 - TSS region transcription start site region 107766
Cpgi2813 11 50325175 to 50326162 987 CpG island CpG island 2813
Tssr107767 11 50325579 to 50325589 10 - TSS region transcription start site region 107767
Tssr107768 11 50325599 to 50325666 67 - TSS region transcription start site region 107768
Gm46280 11 50325720 to 50327156 1436 + lncRNA gene predicted gene, 46280
Tssr101244 11 50325874 to 50325897 23 + TSS region transcription start site region 101244
Tssr101245 11 50325900 to 50325949 49 + TSS region transcription start site region 101245
Tssr107769 11 50326080 to 50326083 3 - TSS region transcription start site region 107769
Tssr107770 11 50326095 to 50326107 12 - TSS region transcription start site region 107770
Gm31865 11 50337265 to 50338267 1002 + pseudogene predicted gene, 31865
Gm12196 11 50347628 to 50347889 261 + pseudogene predicted gene 12196
Cby3 11 50354462 to 50359699 5237 + protein coding gene chibby family member 3
Tssr101246 11 50357759 to 50357773 14 + TSS region transcription start site region 101246
Mir804 11 50357785 to 50357879 94 - miRNA gene microRNA 804
Cpgi2814 11 50358905 to 50359873 968 CpG island CpG island 2814
Cpgi2815 11 50371459 to 50371732 273 CpG island CpG island 2815
Cpgi2816 11 50376806 to 50378881 2075 CpG island CpG island 2816
Tssr101247 11 50376911 to 50376924 13 + TSS region transcription start site region 101247
Tssr107771 11 50376958 to 50376967 9 - TSS region transcription start site region 107771
Tssr101248 11 50376982 to 50377004 22 + TSS region transcription start site region 101248
Tssr101249 11 50377013 to 50377024 11 + TSS region transcription start site region 101249
Tssr101250 11 50377047 to 50377063 16 + TSS region transcription start site region 101250
Tssr101251 11 50377069 to 50377086 17 + TSS region transcription start site region 101251
Tssr107772 11 50377603 to 50377647 44 - TSS region transcription start site region 107772
Hnrnph1 11 50377694 to 50386528 8834 + protein coding gene heterogeneous nuclear ribonucleoprotein H1
Tssr101252 11 50377757 to 50377779 22 + TSS region transcription start site region 101252
Tssr101253 11 50378010 to 50378046 36 + TSS region transcription start site region 101253
Tssr101254 11 50378372 to 50378388 16 + TSS region transcription start site region 101254
Tssr101255 11 50381504 to 50381552 48 + TSS region transcription start site region 101255
Tssr101256 11 50382793 to 50382816 23 + TSS region transcription start site region 101256
Tssr101257 11 50383016 to 50383028 12 + TSS region transcription start site region 101257
Rufy1 11 50389286 to 50431125 41839 - protein coding gene RUN and FYVE domain containing 1