Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:49850305-50570383

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mapk9 11 49846751 to 49886421 39670 + protein coding gene mitogen-activated protein kinase 9
Gm23492 11 49895731 to 49895845 114 + miRNA gene predicted gene, 23492
Cpgi2802 11 49901200 to 49902872 1672 CpG island CpG island 2802
Tssr101202 11 49901803 to 49901895 92 + TSS region transcription start site region 101202
Rasgef1c 11 49901816 to 49980223 78407 + protein coding gene RasGEF domain family, member 1C
D11Mit348 11 49982937 to 49983060 123 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 348
Tssr101203 11 49983067 to 49983094 27 + TSS region transcription start site region 101203
Tssr101204 11 49983101 to 49983121 20 + TSS region transcription start site region 101204
Cpgi2803 11 50024816 to 50025998 1182 CpG island CpG island 2803
Tssr101205 11 50024948 to 50025021 73 + TSS region transcription start site region 101205
Tssr101206 11 50025281 to 50025296 15 + TSS region transcription start site region 101206
Tssr101207 11 50025309 to 50025374 65 + TSS region transcription start site region 101207
Rnf130 11 50025346 to 50104758 79412 + protein coding gene ring finger protein 130
Tssr101208 11 50025376 to 50025385 9 + TSS region transcription start site region 101208
Tssr101209 11 50025388 to 50025395 7 + TSS region transcription start site region 101209
Tssr101210 11 50039040 to 50039041 1 + TSS region transcription start site region 101210
B130040O20Rik 11 50063853 to 50067411 3558 unclassified non-coding RNA gene RIKEN cDNA B130040O20 gene
Mir340 11 50069702 to 50069799 97 + miRNA gene microRNA 340
Tssr101211 11 50071206 to 50071219 13 + TSS region transcription start site region 101211
Tssr101212 11 50119592 to 50119608 16 + TSS region transcription start site region 101212
Gm12194 11 50126907 to 50127918 1011 - pseudogene predicted gene 12194
Tssr107709 11 50128131 to 50128140 9 - TSS region transcription start site region 107709
Cpgi2804 11 50130919 to 50131928 1009 CpG island CpG island 2804
Tssr101213 11 50131013 to 50131051 38 + TSS region transcription start site region 101213
Tssr101214 11 50131317 to 50131335 18 + TSS region transcription start site region 101214
Tssr101215 11 50131342 to 50131426 84 + TSS region transcription start site region 101215
Tbc1d9b 11 50131396 to 50172785 41389 + protein coding gene TBC1 domain family, member 9B
Tssr3486 11 50131428 to 50131446 18 + TSS region transcription start site region 3486
Tssr101216 11 50132002 to 50132029 27 + TSS region transcription start site region 101216
Gm12195 11 50134082 to 50135004 922 - antisense lncRNA gene predicted gene 12195
Tssr101217 11 50134399 to 50134421 22 + TSS region transcription start site region 101217
Tssr107710 11 50139726 to 50139744 18 - TSS region transcription start site region 107710
Tssr101218 11 50147915 to 50147917 2 + TSS region transcription start site region 101218
Tssr101219 11 50160250 to 50160254 4 + TSS region transcription start site region 101219
Cpgi2805 11 50174413 to 50175089 676 CpG island CpG island 2805
Tssr101220 11 50174839 to 50174884 45 + TSS region transcription start site region 101220
Mrnip 11 50174851 to 50200116 25265 + protein coding gene MRN complex interacting protein
Sqstm1 11 50200152 to 50210820 10668 - protein coding gene sequestosome 1
Tssr101221 11 50200441 to 50200460 19 + TSS region transcription start site region 101221
Tssr107711 11 50200520 to 50200541 21 - TSS region transcription start site region 107711
Tssr101222 11 50200619 to 50200643 24 + TSS region transcription start site region 101222
Tssr107712 11 50200620 to 50200637 17 - TSS region transcription start site region 107712
Tssr101223 11 50200655 to 50200676 21 + TSS region transcription start site region 101223
Tssr107713 11 50200719 to 50200734 15 - TSS region transcription start site region 107713
Tssr107714 11 50200739 to 50200790 51 - TSS region transcription start site region 107714
Tssr107715 11 50200830 to 50200842 12 - TSS region transcription start site region 107715
Tssr107716 11 50200872 to 50200903 31 - TSS region transcription start site region 107716
Tssr107717 11 50200913 to 50200951 38 - TSS region transcription start site region 107717
Tssr107718 11 50202425 to 50202439 14 - TSS region transcription start site region 107718
Tssr107719 11 50202467 to 50202481 14 - TSS region transcription start site region 107719
Tssr107720 11 50202504 to 50202513 9 - TSS region transcription start site region 107720
Tssr101224 11 50202810 to 50202860 50 + TSS region transcription start site region 101224
Tssr107721 11 50202872 to 50202891 19 - TSS region transcription start site region 107721
Tssr101225 11 50202924 to 50203003 79 + TSS region transcription start site region 101225
Tssr107722 11 50202933 to 50202952 19 - TSS region transcription start site region 107722
Tssr107723 11 50202959 to 50203007 48 - TSS region transcription start site region 107723
Tssr107724 11 50203017 to 50203039 22 - TSS region transcription start site region 107724
Tssr107725 11 50206049 to 50206055 6 - TSS region transcription start site region 107725
Tssr107726 11 50206087 to 50206092 5 - TSS region transcription start site region 107726
Tssr107727 11 50207180 to 50207197 17 - TSS region transcription start site region 107727
Tssr107728 11 50207202 to 50207242 40 - TSS region transcription start site region 107728
Tssr107729 11 50207249 to 50207262 13 - TSS region transcription start site region 107729
Tssr107730 11 50207446 to 50207476 30 - TSS region transcription start site region 107730
Tssr101226 11 50207458 to 50207479 21 + TSS region transcription start site region 101226
Tssr107731 11 50207522 to 50207558 36 - TSS region transcription start site region 107731
Tssr107732 11 50207565 to 50207576 11 - TSS region transcription start site region 107732
Tssr107733 11 50207577 to 50207597 20 - TSS region transcription start site region 107733
Tssr107734 11 50207606 to 50207637 31 - TSS region transcription start site region 107734
Tssr107735 11 50207864 to 50207889 25 - TSS region transcription start site region 107735
Tssr107736 11 50207897 to 50207909 12 - TSS region transcription start site region 107736
Tssr107737 11 50209454 to 50209482 28 - TSS region transcription start site region 107737
Cpgi2806 11 50210200 to 50211107 907 CpG island CpG island 2806
Tssr101227 11 50210305 to 50210383 78 + TSS region transcription start site region 101227
Tssr107738 11 50210788 to 50210793 5 - TSS region transcription start site region 107738
Tssr101228 11 50210944 to 50210958 14 + TSS region transcription start site region 101228
Tssr107739 11 50212047 to 50212058 11 - TSS region transcription start site region 107739
Tssr101229 11 50213292 to 50213304 12 + TSS region transcription start site region 101229
Tssr107740 11 50217800 to 50217845 45 - TSS region transcription start site region 107740
Gm36556 11 50218719 to 50225211 6492 - lncRNA gene predicted gene, 36556
Cpgi2807 11 50224605 to 50226187 1582 CpG island CpG island 2807
Tssr107741 11 50224632 to 50224641 9 - TSS region transcription start site region 107741
Tssr101230 11 50224748 to 50224760 12 + TSS region transcription start site region 101230
Tssr101231 11 50225068 to 50225087 19 + TSS region transcription start site region 101231
Tssr101232 11 50225308 to 50225311 3 + TSS region transcription start site region 101232
Tssr101233 11 50225315 to 50225429 114 + TSS region transcription start site region 101233
Mgat4b 11 50225335 to 50235103 9768 + protein coding gene mannoside acetylglucosaminyltransferase 4, isoenzyme B
Tssr101234 11 50225475 to 50225492 17 + TSS region transcription start site region 101234
Tssr101235 11 50230690 to 50230733 43 + TSS region transcription start site region 101235
Cpgi2808 11 50230718 to 50231350 632 CpG island CpG island 2808
Tssr101236 11 50232051 to 50232076 25 + TSS region transcription start site region 101236
Mir6919 11 50232245 to 50232306 61 + miRNA gene microRNA 6919
Cpgi2809 11 50234661 to 50234846 185 CpG island CpG island 2809
Cpgi2810 11 50236364 to 50237811 1447 CpG island CpG island 2810
Ltc4s 11 50236461 to 50238532 2071 - protein coding gene leukotriene C4 synthase
Tssr101237 11 50236850 to 50236870 20 + TSS region transcription start site region 101237
Tssr101238 11 50236887 to 50236917 30 + TSS region transcription start site region 101238
Gm26542 11 50236953 to 50288839 51886 + antisense lncRNA gene predicted gene, 26542
Tssr101239 11 50237002 to 50237014 12 + TSS region transcription start site region 101239
Tssr107742 11 50238451 to 50238469 18 - TSS region transcription start site region 107742
Tssr107743 11 50238480 to 50238522 42 - TSS region transcription start site region 107743
Tssr101240 11 50252438 to 50252454 16 + TSS region transcription start site region 101240
Tssr107744 11 50252854 to 50252864 10 - TSS region transcription start site region 107744
Cpgi2811 11 50254057 to 50254274 217 CpG island CpG island 2811
Maml1 11 50255634 to 50292311 36677 - protein coding gene mastermind like transcriptional coactivator 1
Tssr107745 11 50278680 to 50278683 3 - TSS region transcription start site region 107745
Tssr101241 11 50291117 to 50291136 19 + TSS region transcription start site region 101241
Cpgi2812 11 50291335 to 50292606 1271 CpG island CpG island 2812
Tssr107746 11 50292302 to 50292363 61 - TSS region transcription start site region 107746
Tssr101242 11 50292470 to 50292516 46 + TSS region transcription start site region 101242
Canx 11 50293961 to 50325673 31712 - protein coding gene calnexin
Tssr107747 11 50295941 to 50295956 15 - TSS region transcription start site region 107747
Tssr107748 11 50296000 to 50296073 73 - TSS region transcription start site region 107748
Tssr107749 11 50296202 to 50296213 11 - TSS region transcription start site region 107749
Tssr107750 11 50298163 to 50298212 49 - TSS region transcription start site region 107750
Tssr101243 11 50298163 to 50298187 24 + TSS region transcription start site region 101243
Tssr107751 11 50298218 to 50298248 30 - TSS region transcription start site region 107751
Tssr107752 11 50299152 to 50299225 73 - TSS region transcription start site region 107752
Tssr107753 11 50299235 to 50299269 34 - TSS region transcription start site region 107753
Tssr107754 11 50300927 to 50300943 16 - TSS region transcription start site region 107754
Tssr107755 11 50300950 to 50301012 62 - TSS region transcription start site region 107755
Tssr107756 11 50301016 to 50301031 15 - TSS region transcription start site region 107756
Tssr107757 11 50301788 to 50301827 39 - TSS region transcription start site region 107757
D11Pjn2 11 50306133 to 50306522 389 DNA segment DNA segment, Chr 11, Patsy J. Nishina 2
Tssr107758 11 50307567 to 50307624 57 - TSS region transcription start site region 107758
Tssr107759 11 50307641 to 50307671 30 - TSS region transcription start site region 107759
Tssr107760 11 50308816 to 50308831 15 - TSS region transcription start site region 107760
Tssr107761 11 50308850 to 50308863 13 - TSS region transcription start site region 107761
Tssr107762 11 50308866 to 50308891 25 - TSS region transcription start site region 107762
Tssr107763 11 50310408 to 50310435 27 - TSS region transcription start site region 107763
Tssr107764 11 50310820 to 50310842 22 - TSS region transcription start site region 107764
Tssr107765 11 50311735 to 50311780 45 - TSS region transcription start site region 107765
Tssr107766 11 50313617 to 50313630 13 - TSS region transcription start site region 107766
Cpgi2813 11 50325175 to 50326162 987 CpG island CpG island 2813
Tssr107767 11 50325579 to 50325589 10 - TSS region transcription start site region 107767
Tssr107768 11 50325599 to 50325666 67 - TSS region transcription start site region 107768
Gm46280 11 50325720 to 50327156 1436 + lncRNA gene predicted gene, 46280
Tssr101244 11 50325874 to 50325897 23 + TSS region transcription start site region 101244
Tssr101245 11 50325900 to 50325949 49 + TSS region transcription start site region 101245
Tssr107769 11 50326080 to 50326083 3 - TSS region transcription start site region 107769
Tssr107770 11 50326095 to 50326107 12 - TSS region transcription start site region 107770
Gm31865 11 50337265 to 50338267 1002 + pseudogene predicted gene, 31865
Gm12196 11 50347628 to 50347889 261 + pseudogene predicted gene 12196
Cby3 11 50354462 to 50359699 5237 + protein coding gene chibby family member 3
Tssr101246 11 50357759 to 50357773 14 + TSS region transcription start site region 101246
Mir804 11 50357785 to 50357879 94 - miRNA gene microRNA 804
Cpgi2814 11 50358905 to 50359873 968 CpG island CpG island 2814
Cpgi2815 11 50371459 to 50371732 273 CpG island CpG island 2815
Cpgi2816 11 50376806 to 50378881 2075 CpG island CpG island 2816
Tssr101247 11 50376911 to 50376924 13 + TSS region transcription start site region 101247
Tssr107771 11 50376958 to 50376967 9 - TSS region transcription start site region 107771
Tssr101248 11 50376982 to 50377004 22 + TSS region transcription start site region 101248
Tssr101249 11 50377013 to 50377024 11 + TSS region transcription start site region 101249
Tssr101250 11 50377047 to 50377063 16 + TSS region transcription start site region 101250
Tssr101251 11 50377069 to 50377086 17 + TSS region transcription start site region 101251
Tssr107772 11 50377603 to 50377647 44 - TSS region transcription start site region 107772
Hnrnph1 11 50377694 to 50386528 8834 + protein coding gene heterogeneous nuclear ribonucleoprotein H1
Tssr101252 11 50377757 to 50377779 22 + TSS region transcription start site region 101252
Tssr101253 11 50378010 to 50378046 36 + TSS region transcription start site region 101253
Tssr101254 11 50378372 to 50378388 16 + TSS region transcription start site region 101254
Tssr101255 11 50381504 to 50381552 48 + TSS region transcription start site region 101255
Tssr101256 11 50382793 to 50382816 23 + TSS region transcription start site region 101256
Tssr101257 11 50383016 to 50383028 12 + TSS region transcription start site region 101257
Rufy1 11 50389286 to 50431125 41839 - protein coding gene RUN and FYVE domain containing 1
Tssr107773 11 50408007 to 50408022 15 - TSS region transcription start site region 107773
Tssr107774 11 50415726 to 50415732 6 - TSS region transcription start site region 107774
Cpgi2817 11 50421843 to 50422071 228 CpG island CpG island 2817
Tssr107775 11 50422002 to 50422062 60 - TSS region transcription start site region 107775
Cpgi2818 11 50430327 to 50431702 1375 CpG island CpG island 2818
Tssr101258 11 50430387 to 50430426 39 + TSS region transcription start site region 101258
Tssr107776 11 50431101 to 50431131 30 - TSS region transcription start site region 107776
Tssr107777 11 50431288 to 50431321 33 - TSS region transcription start site region 107777
Gm23824 11 50510902 to 50511177 275 - unclassified non-coding RNA gene predicted gene, 23824
Tssr3487 11 50543871 to 50543875 4 + TSS region transcription start site region 3487
Gm36763 11 50544898 to 50547717 2819 + lncRNA gene predicted gene, 36763
Gm46259 11 50547780 to 50550704 2924 + lncRNA gene predicted gene, 46259
Tssr107778 11 50557087 to 50557103 16 - TSS region transcription start site region 107778