Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:49000103-50440120

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302 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr107685 11 49017354 to 49017381 27 - TSS region transcription start site region 107685
9930111J21Rik2 11 49037660 to 49051242 13582 - protein coding gene RIKEN cDNA 9930111J21 gene 2
Olfr56 11 49050733 to 49135387 84654 + protein coding gene olfactory receptor 56
Tgtp2 11 49057194 to 49064206 7012 - protein coding gene T cell specific GTPase 2
Tssr107686 11 49064202 to 49064206 4 - TSS region transcription start site region 107686
Gm12187 11 49069696 to 49071070 1374 - pseudogene predicted gene 12187
Tssr101159 11 49076552 to 49076577 25 + TSS region transcription start site region 101159
Tssr101160 11 49076584 to 49076601 17 + TSS region transcription start site region 101160
Ifi47 11 49076587 to 49096974 20387 + protein coding gene interferon gamma inducible protein 47
Tssr107687 11 49081484 to 49081485 1 - TSS region transcription start site region 107687
Tssr101161 11 49086672 to 49086677 5 + TSS region transcription start site region 101161
Tssr101162 11 49086771 to 49086806 35 + TSS region transcription start site region 101162
Tssr101163 11 49086807 to 49086838 31 + TSS region transcription start site region 101163
Tssr101164 11 49086977 to 49086984 7 + TSS region transcription start site region 101164
Tssr101165 11 49087022 to 49087052 30 + TSS region transcription start site region 101165
Tssr101166 11 49087061 to 49087072 11 + TSS region transcription start site region 101166
Tssr107688 11 49087306 to 49087323 17 - TSS region transcription start site region 107688
Gm12188 11 49088234 to 49088543 309 - pseudogene predicted gene 12188
Cpgi2789 11 49088400 to 49088643 243 CpG island CpG island 2789
Tssr101167 11 49088723 to 49088727 4 + TSS region transcription start site region 101167
Tssr101168 11 49088906 to 49088913 7 + TSS region transcription start site region 101168
Tssr101169 11 49089583 to 49089605 22 + TSS region transcription start site region 101169
Tssr101170 11 49090179 to 49090212 33 + TSS region transcription start site region 101170
Tssr101171 11 49092950 to 49092955 5 + TSS region transcription start site region 101171
Tssr101172 11 49095851 to 49095865 14 + TSS region transcription start site region 101172
Tssr101173 11 49096706 to 49096735 29 + TSS region transcription start site region 101173
Tssr107689 11 49096965 to 49096977 12 - TSS region transcription start site region 107689
Tssr101174 11 49098774 to 49098804 30 + TSS region transcription start site region 101174
Olfr1396 11 49112777 to 49113757 980 - protein coding gene olfactory receptor 1396
Tssr107690 11 49119747 to 49119755 8 - TSS region transcription start site region 107690
Olfr1395 11 49148259 to 49149212 953 + protein coding gene olfactory receptor 1395
Olfr1394 11 49160016 to 49160954 938 + protein coding gene olfactory receptor 1394
Btnl9 11 49168325 to 49187089 18764 - protein coding gene butyrophilin-like 9
Cpgi2790 11 49169042 to 49169976 934 CpG island CpG island 2790
Tssr107691 11 49173751 to 49173783 32 - TSS region transcription start site region 107691
Tssr101175 11 49174615 to 49174616 1 + TSS region transcription start site region 101175
Tssr3483 11 49177097 to 49177103 6 + TSS region transcription start site region 3483
Cpgi2791 11 49180583 to 49180858 275 CpG island CpG island 2791
Tssr107692 11 49187052 to 49187076 24 - TSS region transcription start site region 107692
Tssr107693 11 49187079 to 49187088 9 - TSS region transcription start site region 107693
Tssr107694 11 49187092 to 49187105 13 - TSS region transcription start site region 107694
Tssr107695 11 49187110 to 49187124 14 - TSS region transcription start site region 107695
Tssr107696 11 49187135 to 49187146 11 - TSS region transcription start site region 107696
Tssr107697 11 49187168 to 49187195 27 - TSS region transcription start site region 107697
Tssr107698 11 49203207 to 49203231 24 - TSS region transcription start site region 107698
Cpgi2792 11 49203263 to 49203940 677 CpG island CpG island 2792
Tssr101176 11 49203285 to 49203298 13 + TSS region transcription start site region 101176
Zfp62 11 49203292 to 49218816 15524 + protein coding gene zinc finger protein 62
Tssr101177 11 49203314 to 49203344 30 + TSS region transcription start site region 101177
Tssr101178 11 49203465 to 49203524 59 + TSS region transcription start site region 101178
Tssr107699 11 49204257 to 49204283 26 - TSS region transcription start site region 107699
D11Mit139 11 49209750 to 49209867 117 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 139
Lmr31 11 49209750 to 49209867 117 QTL leishmaniasis resistance 31
Gm18583 11 49210904 to 49211641 737 - pseudogene predicted gene, 18583
Tssr101179 11 49212024 to 49212036 12 + TSS region transcription start site region 101179
Cpgi2793 11 49243603 to 49244534 931 CpG island CpG island 2793
Tssr107700 11 49243878 to 49243894 16 - TSS region transcription start site region 107700
Tssr107701 11 49244153 to 49244169 16 - TSS region transcription start site region 107701
Mgat1 11 49244191 to 49263027 18836 + protein coding gene mannoside acetylglucosaminyltransferase 1
Tssr101180 11 49244227 to 49244283 56 + TSS region transcription start site region 101180
Tssr101181 11 49245458 to 49245506 48 + TSS region transcription start site region 101181
Tssr101182 11 49245524 to 49245539 15 + TSS region transcription start site region 101182
Tssr101183 11 49247462 to 49247512 50 + TSS region transcription start site region 101183
Tssr101184 11 49250097 to 49250115 18 + TSS region transcription start site region 101184
Cpgi2794 11 49250359 to 49250999 640 CpG island CpG island 2794
Tssr101185 11 49250542 to 49250572 30 + TSS region transcription start site region 101185
Tssr101186 11 49250583 to 49250597 14 + TSS region transcription start site region 101186
Tssr101187 11 49259040 to 49259051 11 + TSS region transcription start site region 101187
Gm46279 11 49263918 to 49269186 5268 + lncRNA gene predicted gene, 46279
Olfr1393 11 49278304 to 49282769 4465 + protein coding gene olfactory receptor 1393
Olfr1392 11 49293297 to 49294322 1025 + protein coding gene olfactory receptor 1392
D11Mit138 11 49294478 to 49294619 141 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 138
Olfr10 11 49317548 to 49318483 935 + protein coding gene olfactory receptor 10
Olfr1391 11 49327413 to 49328348 935 + protein coding gene olfactory receptor 1391
Olfr1390 11 49340534 to 49341469 935 + protein coding gene olfactory receptor 1390
Gm12189 11 49404620 to 49405531 911 + pseudogene predicted gene 12189
Olfr1389 11 49430427 to 49431499 1072 + protein coding gene olfactory receptor 1389
Olfr1388 11 49443853 to 49444788 935 + protein coding gene olfactory receptor 1388
Olfr1387 11 49459681 to 49460616 935 + protein coding gene olfactory receptor 1387
Olfr1386 11 49470054 to 49471181 1127 + protein coding gene olfactory receptor 1386
Olfr1385 11 49494535 to 49495464 929 + protein coding gene olfactory receptor 1385
Olfr1384 11 49513618 to 49514651 1033 + protein coding gene olfactory receptor 1384
Olfr1383 11 49523725 to 49524660 935 + protein coding gene olfactory receptor 1383
Olfr1382 11 49535187 to 49536122 935 + protein coding gene olfactory receptor 1382
Olfr1381 11 49551749 to 49552684 935 + protein coding gene olfactory receptor 1381
Olfr1380 11 49563923 to 49564858 935 + protein coding gene olfactory receptor 1380
1700024J04Rik 11 49586641 to 49588462 1821 - pseudogene RIKEN cDNA 1700024J04 gene
Cpgi2795 11 49590050 to 49590464 414 CpG island CpG island 2795
Gm39480 11 49590164 to 49592848 2684 + lncRNA gene predicted gene, 39480
Tssr107702 11 49590326 to 49590350 24 - TSS region transcription start site region 107702
Gm42075 11 49593909 to 49598779 4870 - lncRNA gene predicted gene, 42075
Gm12190 11 49595739 to 49595925 186 - pseudogene predicted gene 12190
Cpgi2796 11 49609328 to 49610429 1101 CpG island CpG island 2796
Flt4 11 49609679 to 49652739 43060 + protein coding gene FMS-like tyrosine kinase 4
Tssr101188 11 49609697 to 49609728 31 + TSS region transcription start site region 101188
Cpgi2797 11 49633933 to 49635175 1242 CpG island CpG island 2797
Cpgi2798 11 49636615 to 49637324 709 CpG island CpG island 2798
Tssr101189 11 49651774 to 49651778 4 + TSS region transcription start site region 101189
Tssr101190 11 49663603 to 49663621 18 + TSS region transcription start site region 101190
Scgb3a1 11 49663610 to 49665118 1508 + protein coding gene secretoglobin, family 3A, member 1
Tssr101191 11 49663647 to 49663658 11 + TSS region transcription start site region 101191
Tssr107703 11 49671255 to 49671256 1 - TSS region transcription start site region 107703
Cnot6 11 49671503 to 49712723 41220 - protein coding gene CCR4-NOT transcription complex, subunit 6
Gm12191 11 49678710 to 49679057 347 - pseudogene predicted gene 12191
Tssr107704 11 49679125 to 49679127 2 - TSS region transcription start site region 107704
Gm12192 11 49697880 to 49698366 486 + pseudogene predicted gene 12192
Cpgi2799 11 49711883 to 49713019 1136 CpG island CpG island 2799
Tssr3484 11 49712610 to 49712619 9 - TSS region transcription start site region 3484
Tssr107705 11 49712622 to 49712631 9 - TSS region transcription start site region 107705
Tssr107706 11 49712637 to 49712668 31 - TSS region transcription start site region 107706
Tssr107707 11 49712674 to 49712726 52 - TSS region transcription start site region 107707
Tssr107708 11 49712733 to 49712744 11 - TSS region transcription start site region 107708
Tssr101192 11 49712921 to 49712962 41 + TSS region transcription start site region 101192
Gm36411 11 49714110 to 49727650 13540 + lncRNA gene predicted gene, 36411
Tssr101193 11 49720103 to 49720120 17 + TSS region transcription start site region 101193
Tssr101194 11 49722858 to 49722870 12 + TSS region transcription start site region 101194
Tssr101195 11 49722880 to 49722898 18 + TSS region transcription start site region 101195
Gm23813 11 49771833 to 49771909 76 + miRNA gene predicted gene, 23813
Gm12193 11 49776499 to 49776877 378 + pseudogene predicted gene 12193
Gm36507 11 49789436 to 49823781 34345 - lncRNA gene predicted gene, 36507
Cpgi2800 11 49794067 to 49795019 952 CpG island CpG island 2800
Tssr101196 11 49794157 to 49794184 27 + TSS region transcription start site region 101196
Gfpt2 11 49794178 to 49838613 44435 + protein coding gene glutamine fructose-6-phosphate transaminase 2
D11Mit153 11 49822001 to 49822176 175 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 153
Tssr101197 11 49826715 to 49826725 10 + TSS region transcription start site region 101197
Cpgi2801 11 49846245 to 49847494 1249 CpG island CpG island 2801
Tssr101198 11 49846732 to 49846758 26 + TSS region transcription start site region 101198
Mapk9 11 49846751 to 49886421 39670 + protein coding gene mitogen-activated protein kinase 9
Tssr101199 11 49846764 to 49846799 35 + TSS region transcription start site region 101199
Tssr101200 11 49846805 to 49846814 9 + TSS region transcription start site region 101200
Tssr101201 11 49846884 to 49846937 53 + TSS region transcription start site region 101201
Tssr3485 11 49846938 to 49846949 11 + TSS region transcription start site region 3485
Gm23492 11 49895731 to 49895845 114 + miRNA gene predicted gene, 23492
Cpgi2802 11 49901200 to 49902872 1672 CpG island CpG island 2802
Tssr101202 11 49901803 to 49901895 92 + TSS region transcription start site region 101202
Rasgef1c 11 49901816 to 49980223 78407 + protein coding gene RasGEF domain family, member 1C
D11Mit348 11 49982937 to 49983060 123 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 348
Tssr101203 11 49983067 to 49983094 27 + TSS region transcription start site region 101203
Tssr101204 11 49983101 to 49983121 20 + TSS region transcription start site region 101204
Cpgi2803 11 50024816 to 50025998 1182 CpG island CpG island 2803
Tssr101205 11 50024948 to 50025021 73 + TSS region transcription start site region 101205
Tssr101206 11 50025281 to 50025296 15 + TSS region transcription start site region 101206
Tssr101207 11 50025309 to 50025374 65 + TSS region transcription start site region 101207
Rnf130 11 50025346 to 50104758 79412 + protein coding gene ring finger protein 130
Tssr101208 11 50025376 to 50025385 9 + TSS region transcription start site region 101208
Tssr101209 11 50025388 to 50025395 7 + TSS region transcription start site region 101209
Tssr101210 11 50039040 to 50039041 1 + TSS region transcription start site region 101210
B130040O20Rik 11 50063853 to 50067411 3558 unclassified non-coding RNA gene RIKEN cDNA B130040O20 gene
Mir340 11 50069702 to 50069799 97 + miRNA gene microRNA 340
Tssr101211 11 50071206 to 50071219 13 + TSS region transcription start site region 101211
Tssr101212 11 50119592 to 50119608 16 + TSS region transcription start site region 101212
Gm12194 11 50126907 to 50127918 1011 - pseudogene predicted gene 12194
Tssr107709 11 50128131 to 50128140 9 - TSS region transcription start site region 107709
Cpgi2804 11 50130919 to 50131928 1009 CpG island CpG island 2804
Tssr101213 11 50131013 to 50131051 38 + TSS region transcription start site region 101213
Tssr101214 11 50131317 to 50131335 18 + TSS region transcription start site region 101214
Tssr101215 11 50131342 to 50131426 84 + TSS region transcription start site region 101215
Tbc1d9b 11 50131396 to 50172785 41389 + protein coding gene TBC1 domain family, member 9B
Tssr3486 11 50131428 to 50131446 18 + TSS region transcription start site region 3486
Tssr101216 11 50132002 to 50132029 27 + TSS region transcription start site region 101216
Gm12195 11 50134082 to 50135004 922 - antisense lncRNA gene predicted gene 12195
Tssr101217 11 50134399 to 50134421 22 + TSS region transcription start site region 101217
Tssr107710 11 50139726 to 50139744 18 - TSS region transcription start site region 107710
Tssr101218 11 50147915 to 50147917 2 + TSS region transcription start site region 101218
Tssr101219 11 50160250 to 50160254 4 + TSS region transcription start site region 101219
Cpgi2805 11 50174413 to 50175089 676 CpG island CpG island 2805
Tssr101220 11 50174839 to 50174884 45 + TSS region transcription start site region 101220
Mrnip 11 50174851 to 50200116 25265 + protein coding gene MRN complex interacting protein
Sqstm1 11 50200152 to 50210820 10668 - protein coding gene sequestosome 1
Tssr101221 11 50200441 to 50200460 19 + TSS region transcription start site region 101221
Tssr107711 11 50200520 to 50200541 21 - TSS region transcription start site region 107711
Tssr101222 11 50200619 to 50200643 24 + TSS region transcription start site region 101222
Tssr107712 11 50200620 to 50200637 17 - TSS region transcription start site region 107712
Tssr101223 11 50200655 to 50200676 21 + TSS region transcription start site region 101223
Tssr107713 11 50200719 to 50200734 15 - TSS region transcription start site region 107713
Tssr107714 11 50200739 to 50200790 51 - TSS region transcription start site region 107714
Tssr107715 11 50200830 to 50200842 12 - TSS region transcription start site region 107715
Tssr107716 11 50200872 to 50200903 31 - TSS region transcription start site region 107716
Tssr107717 11 50200913 to 50200951 38 - TSS region transcription start site region 107717
Tssr107718 11 50202425 to 50202439 14 - TSS region transcription start site region 107718
Tssr107719 11 50202467 to 50202481 14 - TSS region transcription start site region 107719
Tssr107720 11 50202504 to 50202513 9 - TSS region transcription start site region 107720
Tssr101224 11 50202810 to 50202860 50 + TSS region transcription start site region 101224
Tssr107721 11 50202872 to 50202891 19 - TSS region transcription start site region 107721
Tssr101225 11 50202924 to 50203003 79 + TSS region transcription start site region 101225
Tssr107722 11 50202933 to 50202952 19 - TSS region transcription start site region 107722
Tssr107723 11 50202959 to 50203007 48 - TSS region transcription start site region 107723
Tssr107724 11 50203017 to 50203039 22 - TSS region transcription start site region 107724
Tssr107725 11 50206049 to 50206055 6 - TSS region transcription start site region 107725
Tssr107726 11 50206087 to 50206092 5 - TSS region transcription start site region 107726
Tssr107727 11 50207180 to 50207197 17 - TSS region transcription start site region 107727
Tssr107728 11 50207202 to 50207242 40 - TSS region transcription start site region 107728
Tssr107729 11 50207249 to 50207262 13 - TSS region transcription start site region 107729
Tssr107730 11 50207446 to 50207476 30 - TSS region transcription start site region 107730
Tssr101226 11 50207458 to 50207479 21 + TSS region transcription start site region 101226
Tssr107731 11 50207522 to 50207558 36 - TSS region transcription start site region 107731
Tssr107732 11 50207565 to 50207576 11 - TSS region transcription start site region 107732
Tssr107733 11 50207577 to 50207597 20 - TSS region transcription start site region 107733
Tssr107734 11 50207606 to 50207637 31 - TSS region transcription start site region 107734
Tssr107735 11 50207864 to 50207889 25 - TSS region transcription start site region 107735