Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:48837257-49147279

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim7 11 48826138 to 48850644 24506 + protein coding gene tripartite motif-containing 7
Cpgi2783 11 48837068 to 48838494 1426 CpG island CpG island 2783
Tssr101148 11 48837434 to 48837443 9 + TSS region transcription start site region 101148
Tssr101149 11 48837465 to 48837481 16 + TSS region transcription start site region 101149
Tssr101150 11 48837492 to 48837513 21 + TSS region transcription start site region 101150
Tssr107643 11 48838528 to 48838542 14 - TSS region transcription start site region 107643
Tssr107644 11 48838545 to 48838559 14 - TSS region transcription start site region 107644
Tssr101151 11 48838672 to 48838714 42 + TSS region transcription start site region 101151
Gm16170 11 48843648 to 48853493 9845 - antisense lncRNA gene predicted gene 16170
Cpgi2784 11 48849494 to 48849934 440 CpG island CpG island 2784
Cpgi2785 11 48853253 to 48853492 239 CpG island CpG island 2785
n-TTtgt2 11 48853619 to 48853691 72 + tRNA gene nuclear encoded tRNA threonine 2 (anticodon TGT)
Cpgi2786 11 48853825 to 48854222 397 CpG island CpG island 2786
Cpgi2787 11 48855323 to 48855781 458 CpG island CpG island 2787
n-TPtgg4 11 48856280 to 48856351 71 + tRNA gene nuclear encoded tRNA proline 4 (anticodon TGG)
n-TVaac7 11 48856637 to 48856709 72 + tRNA gene nuclear encoded tRNA valine 7 (anticodon AAC)
Cpgi2788 11 48856873 to 48857097 224 CpG island CpG island 2788
n-TLaag6 11 48856974 to 48857055 81 - tRNA gene nuclear encoded tRNA leucine 6 (anticodon AAG)
Irgm1 11 48865245 to 48871454 6209 - protein coding gene immunity-related GTPase family M member 1
Tssr107645 11 48866229 to 48866265 36 - TSS region transcription start site region 107645
Tssr107646 11 48866336 to 48866374 38 - TSS region transcription start site region 107646
Tssr107647 11 48866982 to 48867009 27 - TSS region transcription start site region 107647
Tssr107648 11 48868096 to 48868113 17 - TSS region transcription start site region 107648
Tssr107649 11 48868609 to 48868630 21 - TSS region transcription start site region 107649
Tssr107650 11 48871146 to 48871152 6 - TSS region transcription start site region 107650
Tssr107651 11 48871176 to 48871190 14 - TSS region transcription start site region 107651
Tssr107652 11 48871205 to 48871210 5 - TSS region transcription start site region 107652
Tssr107653 11 48871259 to 48871273 14 - TSS region transcription start site region 107653
Tssr107654 11 48871278 to 48871300 22 - TSS region transcription start site region 107654
Tssr107655 11 48871317 to 48871337 20 - TSS region transcription start site region 107655
Tssr107656 11 48871344 to 48871407 63 - TSS region transcription start site region 107656
Tssr107657 11 48871408 to 48871424 16 - TSS region transcription start site region 107657
Tssr101152 11 48871638 to 48871662 24 + TSS region transcription start site region 101152
Tssr101153 11 48871862 to 48871869 7 + TSS region transcription start site region 101153
Tssr107658 11 48872279 to 48872340 61 - TSS region transcription start site region 107658
Tssr107659 11 48872349 to 48872358 9 - TSS region transcription start site region 107659
Tssr101154 11 48872558 to 48872560 2 + TSS region transcription start site region 101154
Gm5431 11 48887422 to 48902152 14730 - protein coding gene predicted gene 5431
Tssr107660 11 48891540 to 48891565 25 - TSS region transcription start site region 107660
Tssr107661 11 48891638 to 48891645 7 - TSS region transcription start site region 107661
Tssr107662 11 48891661 to 48891687 26 - TSS region transcription start site region 107662
Tssr107663 11 48891791 to 48891804 13 - TSS region transcription start site region 107663
Tssr107664 11 48891884 to 48891895 11 - TSS region transcription start site region 107664
Tssr107665 11 48891990 to 48892001 11 - TSS region transcription start site region 107665
Tssr107666 11 48892026 to 48892041 15 - TSS region transcription start site region 107666
Tssr107667 11 48892128 to 48892131 3 - TSS region transcription start site region 107667
Tssr107668 11 48892156 to 48892166 10 - TSS region transcription start site region 107668
Tssr107669 11 48893379 to 48893401 22 - TSS region transcription start site region 107669
Tssr107670 11 48893415 to 48893432 17 - TSS region transcription start site region 107670
Tssr101155 11 48901299 to 48901313 14 + TSS region transcription start site region 101155
Tssr101156 11 48901314 to 48901339 25 + TSS region transcription start site region 101156
Tssr107671 11 48902011 to 48902044 33 - TSS region transcription start site region 107671
Tssr107672 11 48902104 to 48902128 24 - TSS region transcription start site region 107672
Tssr107673 11 48902151 to 48902201 50 - TSS region transcription start site region 107673
Tssr101157 11 48902286 to 48902299 13 + TSS region transcription start site region 101157
Gm12185 11 48904656 to 48927182 22526 - protein coding gene predicted gene 12185
Tssr101158 11 48910578 to 48910580 2 + TSS region transcription start site region 101158
Tssr107674 11 48913950 to 48913960 10 - TSS region transcription start site region 107674
Tssr107675 11 48927177 to 48927182 5 - TSS region transcription start site region 107675
Tssr107676 11 48928224 to 48928229 5 - TSS region transcription start site region 107676
Tssr107677 11 48945241 to 48945263 22 - TSS region transcription start site region 107677
Psme2b 11 48945354 to 48946190 836 - protein coding gene protease (prosome, macropain) activator subunit 2B
Tssr107678 11 48945485 to 48945517 32 - TSS region transcription start site region 107678
Tssr107679 11 48946148 to 48946150 2 - TSS region transcription start site region 107679
9930111J21Rik1 11 48946150 to 48979381 33231 - protein coding gene RIKEN cDNA 9930111J21 gene 1
Gm42074 11 48977630 to 48991996 14366 + lncRNA gene predicted gene, 42074
Tgtp1 11 48985329 to 48992246 6917 - protein coding gene T cell specific GTPase 1
Tssr107680 11 48992257 to 48992279 22 - TSS region transcription start site region 107680
Tssr107681 11 48992305 to 48992320 15 - TSS region transcription start site region 107681
Tssr107682 11 48994182 to 48994186 4 - TSS region transcription start site region 107682
Gm12186 11 48996674 to 48997713 1039 - pseudogene predicted gene 12186
Tssr107683 11 48997116 to 48997128 12 - TSS region transcription start site region 107683
Tssr107684 11 48997780 to 48997786 6 - TSS region transcription start site region 107684
Tssr107685 11 49017354 to 49017381 27 - TSS region transcription start site region 107685
9930111J21Rik2 11 49037660 to 49051242 13582 - protein coding gene RIKEN cDNA 9930111J21 gene 2
Olfr56 11 49050733 to 49135387 84654 + protein coding gene olfactory receptor 56
Tgtp2 11 49057194 to 49064206 7012 - protein coding gene T cell specific GTPase 2
Tssr107686 11 49064202 to 49064206 4 - TSS region transcription start site region 107686
Gm12187 11 49069696 to 49071070 1374 - pseudogene predicted gene 12187
Tssr101159 11 49076552 to 49076577 25 + TSS region transcription start site region 101159
Tssr101160 11 49076584 to 49076601 17 + TSS region transcription start site region 101160
Ifi47 11 49076587 to 49096974 20387 + protein coding gene interferon gamma inducible protein 47
Tssr107687 11 49081484 to 49081485 1 - TSS region transcription start site region 107687
Tssr101161 11 49086672 to 49086677 5 + TSS region transcription start site region 101161
Tssr101162 11 49086771 to 49086806 35 + TSS region transcription start site region 101162
Tssr101163 11 49086807 to 49086838 31 + TSS region transcription start site region 101163
Tssr101164 11 49086977 to 49086984 7 + TSS region transcription start site region 101164
Tssr101165 11 49087022 to 49087052 30 + TSS region transcription start site region 101165
Tssr101166 11 49087061 to 49087072 11 + TSS region transcription start site region 101166
Tssr107688 11 49087306 to 49087323 17 - TSS region transcription start site region 107688
Gm12188 11 49088234 to 49088543 309 - pseudogene predicted gene 12188
Cpgi2789 11 49088400 to 49088643 243 CpG island CpG island 2789
Tssr101167 11 49088723 to 49088727 4 + TSS region transcription start site region 101167
Tssr101168 11 49088906 to 49088913 7 + TSS region transcription start site region 101168
Tssr101169 11 49089583 to 49089605 22 + TSS region transcription start site region 101169
Tssr101170 11 49090179 to 49090212 33 + TSS region transcription start site region 101170
Tssr101171 11 49092950 to 49092955 5 + TSS region transcription start site region 101171
Tssr101172 11 49095851 to 49095865 14 + TSS region transcription start site region 101172
Tssr101173 11 49096706 to 49096735 29 + TSS region transcription start site region 101173
Tssr107689 11 49096965 to 49096977 12 - TSS region transcription start site region 107689
Tssr101174 11 49098774 to 49098804 30 + TSS region transcription start site region 101174
Olfr1396 11 49112777 to 49113757 980 - protein coding gene olfactory receptor 1396
Tssr107690 11 49119747 to 49119755 8 - TSS region transcription start site region 107690