Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:48826974-48887055

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2782 11 48826055 to 48827066 1011 CpG island CpG island 2782
Trim7 11 48826138 to 48850644 24506 + protein coding gene tripartite motif-containing 7
n-TKctt10 11 48833883 to 48833955 72 - tRNA gene nuclear encoded tRNA lysine 10 (anticodon CTT)
n-TAtgc9 11 48834429 to 48834500 71 - tRNA gene nuclear encoded tRNA alanine 9 (anticodon TGC)
Cpgi2783 11 48837068 to 48838494 1426 CpG island CpG island 2783
Tssr101148 11 48837434 to 48837443 9 + TSS region transcription start site region 101148
Tssr101149 11 48837465 to 48837481 16 + TSS region transcription start site region 101149
Tssr101150 11 48837492 to 48837513 21 + TSS region transcription start site region 101150
Tssr107643 11 48838528 to 48838542 14 - TSS region transcription start site region 107643
Tssr107644 11 48838545 to 48838559 14 - TSS region transcription start site region 107644
Tssr101151 11 48838672 to 48838714 42 + TSS region transcription start site region 101151
Gm16170 11 48843648 to 48853493 9845 - antisense lncRNA gene predicted gene 16170
Cpgi2784 11 48849494 to 48849934 440 CpG island CpG island 2784
Cpgi2785 11 48853253 to 48853492 239 CpG island CpG island 2785
n-TTtgt2 11 48853619 to 48853691 72 + tRNA gene nuclear encoded tRNA threonine 2 (anticodon TGT)
Cpgi2786 11 48853825 to 48854222 397 CpG island CpG island 2786
Cpgi2787 11 48855323 to 48855781 458 CpG island CpG island 2787
n-TPtgg4 11 48856280 to 48856351 71 + tRNA gene nuclear encoded tRNA proline 4 (anticodon TGG)
n-TVaac7 11 48856637 to 48856709 72 + tRNA gene nuclear encoded tRNA valine 7 (anticodon AAC)
Cpgi2788 11 48856873 to 48857097 224 CpG island CpG island 2788
n-TLaag6 11 48856974 to 48857055 81 - tRNA gene nuclear encoded tRNA leucine 6 (anticodon AAG)
Irgm1 11 48865245 to 48871454 6209 - protein coding gene immunity-related GTPase family M member 1
Tssr107645 11 48866229 to 48866265 36 - TSS region transcription start site region 107645
Tssr107646 11 48866336 to 48866374 38 - TSS region transcription start site region 107646
Tssr107647 11 48866982 to 48867009 27 - TSS region transcription start site region 107647
Tssr107648 11 48868096 to 48868113 17 - TSS region transcription start site region 107648
Tssr107649 11 48868609 to 48868630 21 - TSS region transcription start site region 107649
Tssr107650 11 48871146 to 48871152 6 - TSS region transcription start site region 107650
Tssr107651 11 48871176 to 48871190 14 - TSS region transcription start site region 107651
Tssr107652 11 48871205 to 48871210 5 - TSS region transcription start site region 107652
Tssr107653 11 48871259 to 48871273 14 - TSS region transcription start site region 107653
Tssr107654 11 48871278 to 48871300 22 - TSS region transcription start site region 107654
Tssr107655 11 48871317 to 48871337 20 - TSS region transcription start site region 107655
Tssr107656 11 48871344 to 48871407 63 - TSS region transcription start site region 107656
Tssr107657 11 48871408 to 48871424 16 - TSS region transcription start site region 107657
Tssr101152 11 48871638 to 48871662 24 + TSS region transcription start site region 101152
Tssr101153 11 48871862 to 48871869 7 + TSS region transcription start site region 101153
Tssr107658 11 48872279 to 48872340 61 - TSS region transcription start site region 107658
Tssr107659 11 48872349 to 48872358 9 - TSS region transcription start site region 107659
Tssr101154 11 48872558 to 48872560 2 + TSS region transcription start site region 101154