Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:4881896-6201929

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288 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nipsnap1 11 4873959 to 4894201 20242 + protein coding gene nipsnap homolog 1
Tssr100140 11 4883186 to 4883222 36 + TSS region transcription start site region 100140
Cpgi2521 11 4883563 to 4883786 223 CpG island CpG island 2521
Tssr100141 11 4887761 to 4887767 6 + TSS region transcription start site region 100141
Tssr100142 11 4891205 to 4891210 5 + TSS region transcription start site region 100142
Mir6918 11 4891345 to 4891402 57 + miRNA gene microRNA 6918
Cpgi2522 11 4895008 to 4895893 885 CpG island CpG island 2522
Tssr100143 11 4895316 to 4895327 11 + TSS region transcription start site region 100143
Thoc5 11 4895320 to 4928867 33547 + protein coding gene THO complex 5
Tssr100144 11 4895328 to 4895354 26 + TSS region transcription start site region 100144
Tssr100145 11 4902242 to 4902247 5 + TSS region transcription start site region 100145
Tssr100146 11 4902279 to 4902291 12 + TSS region transcription start site region 100146
AA413626 11 4918516 to 4918918 402 + pseudogene expressed sequence AA413626
Gm35321 11 4934377 to 4943237 8860 + lncRNA gene predicted gene, 35321
Nefh 11 4938754 to 4948064 9310 - protein coding gene neurofilament, heavy polypeptide
Tssr106583 11 4939535 to 4939546 11 - TSS region transcription start site region 106583
Tssr106584 11 4939621 to 4939632 11 - TSS region transcription start site region 106584
Tssr106585 11 4939680 to 4939694 14 - TSS region transcription start site region 106585
Tssr106586 11 4939709 to 4939724 15 - TSS region transcription start site region 106586
Tssr106587 11 4939809 to 4939818 9 - TSS region transcription start site region 106587
Tssr106588 11 4939933 to 4939941 8 - TSS region transcription start site region 106588
Tssr106589 11 4940041 to 4940050 9 - TSS region transcription start site region 106589
Tssr100147 11 4941150 to 4941166 16 + TSS region transcription start site region 100147
Tssr100148 11 4941272 to 4941285 13 + TSS region transcription start site region 100148
Tssr106590 11 4941394 to 4941405 11 - TSS region transcription start site region 106590
Tssr106591 11 4943923 to 4943934 11 - TSS region transcription start site region 106591
Gm39571 11 4943939 to 4944527 588 + lncRNA gene predicted gene, 39571
Cpgi2523 11 4946656 to 4948492 1836 CpG island CpG island 2523
Tssr106592 11 4947105 to 4947134 29 - TSS region transcription start site region 106592
Tssr100149 11 4947356 to 4947391 35 + TSS region transcription start site region 100149
Tssr100150 11 4947473 to 4947511 38 + TSS region transcription start site region 100150
Tssr106593 11 4947991 to 4948009 18 - TSS region transcription start site region 106593
Cpgi2524 11 4949275 to 4949567 292 CpG island CpG island 2524
Tssr106594 11 4984795 to 4984802 7 - TSS region transcription start site region 106594
Cpgi2525 11 4986721 to 4987660 939 CpG island CpG island 2525
Tssr106595 11 4986735 to 4986747 12 - TSS region transcription start site region 106595
Ap1b1 11 4986824 to 5042791 55967 + protein coding gene adaptor protein complex AP-1, beta 1 subunit
Tssr100151 11 4986883 to 4986894 11 + TSS region transcription start site region 100151
Tssr100152 11 4986898 to 4986949 51 + TSS region transcription start site region 100152
Tssr100153 11 4986950 to 4986964 14 + TSS region transcription start site region 100153
Tssr106596 11 4992566 to 4992597 31 - TSS region transcription start site region 106596
Tssr100154 11 5009464 to 5009483 19 + TSS region transcription start site region 100154
Tssr100155 11 5009494 to 5009506 12 + TSS region transcription start site region 100155
Tssr100156 11 5009515 to 5009526 11 + TSS region transcription start site region 100156
Tssr100157 11 5012569 to 5012580 11 + TSS region transcription start site region 100157
Tssr100158 11 5012582 to 5012608 26 + TSS region transcription start site region 100158
Tssr100159 11 5012634 to 5012647 13 + TSS region transcription start site region 100159
Tssr100160 11 5012675 to 5012705 30 + TSS region transcription start site region 100160
Gm47296 11 5038204 to 5038307 103 + miRNA gene predicted gene, 47296
Gm24958 11 5038211 to 5038307 96 + snoRNA gene predicted gene, 24958
Tssr100161 11 5039152 to 5039164 12 + TSS region transcription start site region 100161
Gas2l1 11 5054132 to 5065327 11195 - protein coding gene growth arrest-specific 2 like 1
Cpgi2526 11 5057660 to 5058669 1009 CpG island CpG island 2526
Tssr100162 11 5058021 to 5058045 24 + TSS region transcription start site region 100162
Tssr100163 11 5058111 to 5058147 36 + TSS region transcription start site region 100163
Rasl10a 11 5058128 to 5060384 2256 + protein coding gene RAS-like, family 10, member A
Cpgi2527 11 5059489 to 5060149 660 CpG island CpG island 2527
Cpgi2528 11 5061126 to 5062481 1355 CpG island CpG island 2528
Tssr106597 11 5061780 to 5061804 24 - TSS region transcription start site region 106597
Tssr3417 11 5061969 to 5061976 7 - TSS region transcription start site region 3417
Tssr106598 11 5061993 to 5062034 41 - TSS region transcription start site region 106598
Tssr106599 11 5063852 to 5063885 33 - TSS region transcription start site region 106599
Cpgi2529 11 5063944 to 5065672 1728 CpG island CpG island 2529
Tssr106600 11 5065276 to 5065329 53 - TSS region transcription start site region 106600
Ewsr1 11 5069687 to 5099099 29412 - protein coding gene Ewing sarcoma breakpoint region 1
Tssr106601 11 5074878 to 5074882 4 - TSS region transcription start site region 106601
Tssr106602 11 5079794 to 5079800 6 - TSS region transcription start site region 106602
Cpgi2530 11 5098233 to 5100126 1893 CpG island CpG island 2530
Tssr106603 11 5098750 to 5098759 9 - TSS region transcription start site region 106603
Tssr100164 11 5098915 to 5098926 11 + TSS region transcription start site region 100164
Tssr106604 11 5099036 to 5099050 14 - TSS region transcription start site region 106604
Tssr106605 11 5099053 to 5099081 28 - TSS region transcription start site region 106605
Tssr106606 11 5099084 to 5099095 11 - TSS region transcription start site region 106606
Rhbdd3 11 5099187 to 5106100 6913 + protein coding gene rhomboid domain containing 3
Tssr106607 11 5099223 to 5099242 19 - TSS region transcription start site region 106607
Tssr100165 11 5099266 to 5099279 13 + TSS region transcription start site region 100165
Tssr106608 11 5099323 to 5099356 33 - TSS region transcription start site region 106608
Tssr100166 11 5099406 to 5099518 112 + TSS region transcription start site region 100166
Tssr100167 11 5099626 to 5099646 20 + TSS region transcription start site region 100167
Tssr100168 11 5099659 to 5099677 18 + TSS region transcription start site region 100168
Gm46267 11 5099967 to 5101417 1450 - lncRNA gene predicted gene, 46267
Tssr100169 11 5105177 to 5105187 10 + TSS region transcription start site region 100169
Tssr100170 11 5105214 to 5105221 7 + TSS region transcription start site region 100170
Emid1 11 5106265 to 5152257 45992 - protein coding gene EMI domain containing 1
Tssr106609 11 5110117 to 5110122 5 - TSS region transcription start site region 106609
Gm46266 11 5112392 to 5131907 19515 + lncRNA gene predicted gene, 46266
Tssr106610 11 5129220 to 5129260 40 - TSS region transcription start site region 106610
Gm39572 11 5136186 to 5137082 896 + lncRNA gene predicted gene, 39572
Tssr100171 11 5136238 to 5136254 16 + TSS region transcription start site region 100171
Tssr100172 11 5136258 to 5136283 25 + TSS region transcription start site region 100172
Tssr100173 11 5146570 to 5146618 48 + TSS region transcription start site region 100173
Tssr106611 11 5150062 to 5150094 32 - TSS region transcription start site region 106611
Cpgi2531 11 5151787 to 5152842 1055 CpG island CpG island 2531
Tssr106612 11 5152218 to 5152272 54 - TSS region transcription start site region 106612
Tssr106613 11 5177225 to 5177230 5 - TSS region transcription start site region 106613
D11Dcr3 11 5180568 to 5180681 113 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 3
Gm18478 11 5187863 to 5188467 604 + pseudogene predicted gene, 18478
Kremen1 11 5191552 to 5261558 70006 - protein coding gene kringle containing transmembrane protein 1
Tssr100174 11 5196005 to 5196012 7 + TSS region transcription start site region 100174
Tssr3418 11 5229795 to 5229807 12 - TSS region transcription start site region 3418
Gm25142 11 5251850 to 5251956 106 + snRNA gene predicted gene, 25142
Tssr106614 11 5253712 to 5253722 10 - TSS region transcription start site region 106614
Gm46268 11 5260481 to 5268799 8318 + lncRNA gene predicted gene, 46268
Cpgi2532 11 5260973 to 5262323 1350 CpG island CpG island 2532
Tssr106615 11 5261530 to 5261543 13 - TSS region transcription start site region 106615
Tssr106616 11 5261569 to 5261637 68 - TSS region transcription start site region 106616
Tssr106617 11 5261710 to 5261721 11 - TSS region transcription start site region 106617
Tssr106618 11 5261722 to 5261754 32 - TSS region transcription start site region 106618
Cpgi2533 11 5263071 to 5263362 291 CpG island CpG island 2533
Gm30172 11 5273921 to 5275926 2005 + protein coding gene predicted gene, 30172
Znrf3 11 5276329 to 5444847 168518 - protein coding gene zinc and ring finger 3
Tssr106619 11 5277561 to 5277567 6 - TSS region transcription start site region 106619
BC025031 11 5313002 to 5315603 2601 unclassified gene cDNA sequence BC025031
D11Mit74 11 5326905 to 5327122 217 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 74
Tssr106620 11 5381734 to 5381745 11 - TSS region transcription start site region 106620
Tssr106621 11 5390914 to 5390920 6 - TSS region transcription start site region 106621
Tssr106622 11 5394429 to 5394433 4 - TSS region transcription start site region 106622
Tssr106623 11 5401276 to 5401282 6 - TSS region transcription start site region 106623
Tssr106624 11 5421562 to 5421566 4 - TSS region transcription start site region 106624
Cpgi2534 11 5443759 to 5445635 1876 CpG island CpG island 2534
Tssr106625 11 5444779 to 5444823 44 - TSS region transcription start site region 106625
Tssr106626 11 5444838 to 5444872 34 - TSS region transcription start site region 106626
Tssr106627 11 5478337 to 5478372 35 - TSS region transcription start site region 106627
Tssr100175 11 5485870 to 5485914 44 + TSS region transcription start site region 100175
Gm11962 11 5495192 to 5495446 254 - pseudogene predicted gene 11962
Tssr100176 11 5498676 to 5498689 13 + TSS region transcription start site region 100176
Gm11963 11 5498840 to 5505699 6859 + antisense lncRNA gene predicted gene 11963
Tssr100177 11 5505964 to 5505982 18 + TSS region transcription start site region 100177
Cpgi2535 11 5520599 to 5521815 1216 CpG island CpG island 2535
Tssr100178 11 5520652 to 5520656 4 + TSS region transcription start site region 100178
Xbp1 11 5520659 to 5525893 5234 + protein coding gene X-box binding protein 1
Tssr100179 11 5520951 to 5520966 15 + TSS region transcription start site region 100179
Tssr100180 11 5520970 to 5520989 19 + TSS region transcription start site region 100180
Tssr100181 11 5524789 to 5524804 15 + TSS region transcription start site region 100181
Tssr100182 11 5525191 to 5525204 13 + TSS region transcription start site region 100182
Tssr100183 11 5525255 to 5525275 20 + TSS region transcription start site region 100183
Tssr100184 11 5525474 to 5525486 12 + TSS region transcription start site region 100184
Ccdc117 11 5528887 to 5542187 13300 - protein coding gene coiled-coil domain containing 117
Cpgi2536 11 5541475 to 5542378 903 CpG island CpG island 2536
Tssr106628 11 5541768 to 5541774 6 - TSS region transcription start site region 106628
Tssr100185 11 5541872 to 5541893 21 + TSS region transcription start site region 100185
Tssr100186 11 5541896 to 5541929 33 + TSS region transcription start site region 100186
Tssr100187 11 5541932 to 5541942 10 + TSS region transcription start site region 100187
Tssr106629 11 5542139 to 5542170 31 - TSS region transcription start site region 106629
Tssr106630 11 5542177 to 5542219 42 - TSS region transcription start site region 106630
Tssr106631 11 5542226 to 5542243 17 - TSS region transcription start site region 106631
Tssr106632 11 5542244 to 5542267 23 - TSS region transcription start site region 106632
Tssr100188 11 5542441 to 5542446 5 + TSS region transcription start site region 100188
Gm22471 11 5560606 to 5560735 129 - snoRNA gene predicted gene, 22471
Gm3186 11 5563940 to 5564560 620 - pseudogene predicted gene 3186
Gm39573 11 5565391 to 5569118 3727 - lncRNA gene predicted gene, 39573
Tssr100189 11 5569679 to 5569690 11 + TSS region transcription start site region 100189
Ankrd36 11 5569684 to 5689337 119653 + protein coding gene ankyrin repeat domain 36
Tssr100190 11 5574107 to 5574115 8 + TSS region transcription start site region 100190
Tssr100191 11 5574156 to 5574167 11 + TSS region transcription start site region 100191
Tssr100192 11 5595435 to 5595438 3 + TSS region transcription start site region 100192
Tssr100193 11 5628740 to 5628754 14 + TSS region transcription start site region 100193
Tssr100194 11 5628756 to 5628767 11 + TSS region transcription start site region 100194
Cpgi2537 11 5634053 to 5634549 496 CpG island CpG island 2537
Gm11964 11 5634139 to 5634582 443 + pseudogene predicted gene 11964
Gm11965 11 5678356 to 5678632 276 - pseudogene predicted gene 11965
Mrps24 11 5703983 to 5707717 3734 - protein coding gene mitochondrial ribosomal protein S24
Cpgi2538 11 5706997 to 5707885 888 CpG island CpG island 2538
Tssr106633 11 5707658 to 5707708 50 - TSS region transcription start site region 106633
Tssr106634 11 5707729 to 5707732 3 - TSS region transcription start site region 106634
Urgcp 11 5713417 to 5762376 48959 - protein coding gene upregulator of cell proliferation
Tssr106635 11 5739366 to 5739369 3 - TSS region transcription start site region 106635
Cpgi2539 11 5740598 to 5741522 924 CpG island CpG island 2539
Tssr100195 11 5740740 to 5740755 15 + TSS region transcription start site region 100195
Tssr106636 11 5741117 to 5741139 22 - TSS region transcription start site region 106636
Tssr106637 11 5741141 to 5741182 41 - TSS region transcription start site region 106637
5730405O12Rik 11 5755006 to 5758298 3292 unclassified gene RIKEN cDNA 5730405O12 gene
Cpgi2540 11 5761752 to 5762817 1065 CpG island CpG island 2540
Tssr106638 11 5762044 to 5762053 9 - TSS region transcription start site region 106638
Tssr100196 11 5762121 to 5762182 61 + TSS region transcription start site region 100196
Ube2d-ps 11 5762150 to 5784710 22560 + pseudogene ubiquitin-conjugating enzyme E2D, pseudogene
Tssr106639 11 5762358 to 5762404 46 - TSS region transcription start site region 106639
Tssr100197 11 5784790 to 5784794 4 + TSS region transcription start site region 100197
Cpgi2541 11 5788133 to 5789123 990 CpG island CpG island 2541
Tssr106640 11 5788262 to 5788276 14 - TSS region transcription start site region 106640
Tssr106641 11 5788358 to 5788434 76 - TSS region transcription start site region 106641
Tssr100198 11 5788480 to 5788560 80 + TSS region transcription start site region 100198
Dbnl 11 5788488 to 5800962 12474 + protein coding gene drebrin-like
Tssr100199 11 5793709 to 5793726 17 + TSS region transcription start site region 100199
Tssr100200 11 5797511 to 5797526 15 + TSS region transcription start site region 100200
Tssr100201 11 5797540 to 5797554 14 + TSS region transcription start site region 100201
Tssr100202 11 5797987 to 5798005 18 + TSS region transcription start site region 100202
Tssr100203 11 5799284 to 5799305 21 + TSS region transcription start site region 100203
Tssr100204 11 5800147 to 5800184 37 + TSS region transcription start site region 100204
Pgam2 11 5801640 to 5803733 2093 - protein coding gene phosphoglycerate mutase 2
Tssr100205 11 5803269 to 5803280 11 + TSS region transcription start site region 100205
Tssr106642 11 5803319 to 5803347 28 - TSS region transcription start site region 106642
Tssr106643 11 5803558 to 5803569 11 - TSS region transcription start site region 106643
Tssr106644 11 5803683 to 5803689 6 - TSS region transcription start site region 106644
Tssr106645 11 5803706 to 5803728 22 - TSS region transcription start site region 106645
Tssr106646 11 5803735 to 5803759 24 - TSS region transcription start site region 106646
Gm11966 11 5818497 to 5818583 86 - pseudogene predicted gene 11966
Polm 11 5827860 to 5838016 10156 - protein coding gene polymerase (DNA directed), mu
Cpgi2542 11 5837314 to 5838064 750 CpG island CpG island 2542
Tssr106647 11 5837727 to 5837736 9 - TSS region transcription start site region 106647