Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:48816138-48860644

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim41 11 48806404 to 48817353 10949 - protein coding gene tripartite motif-containing 41
Cpgi2779 11 48816298 to 48817700 1402 CpG island CpG island 2779
Tssr107638 11 48816905 to 48816928 23 - TSS region transcription start site region 107638
Tssr107639 11 48816936 to 48816961 25 - TSS region transcription start site region 107639
Tssr101146 11 48817176 to 48817184 8 + TSS region transcription start site region 101146
Tssr107640 11 48817332 to 48817389 57 - TSS region transcription start site region 107640
Tssr101147 11 48817565 to 48817585 20 + TSS region transcription start site region 101147
n-TVcac7 11 48818542 to 48818614 72 + tRNA gene nuclear encoded tRNA valine 7 (anticodon CAC)
Cpgi2780 11 48821498 to 48821752 254 CpG island CpG island 2780
n-TGacc1 11 48823728 to 48823801 73 + tRNA gene nuclear encoded tRNA glycine 1 (anticodon ACC)
Cpgi2781 11 48824190 to 48824739 549 CpG island CpG island 2781
Gm12184 11 48825346 to 48826612 1266 - protein coding gene predicted gene 12184
Cpgi2782 11 48826055 to 48827066 1011 CpG island CpG island 2782
Trim7 11 48826138 to 48850644 24506 + protein coding gene tripartite motif-containing 7
Tssr107641 11 48826301 to 48826323 22 - TSS region transcription start site region 107641
Tssr107642 11 48826724 to 48826747 23 - TSS region transcription start site region 107642
n-TKctt10 11 48833883 to 48833955 72 - tRNA gene nuclear encoded tRNA lysine 10 (anticodon CTT)
n-TAtgc9 11 48834429 to 48834500 71 - tRNA gene nuclear encoded tRNA alanine 9 (anticodon TGC)
Cpgi2783 11 48837068 to 48838494 1426 CpG island CpG island 2783
Tssr101148 11 48837434 to 48837443 9 + TSS region transcription start site region 101148
Tssr101149 11 48837465 to 48837481 16 + TSS region transcription start site region 101149
Tssr101150 11 48837492 to 48837513 21 + TSS region transcription start site region 101150
Tssr107643 11 48838528 to 48838542 14 - TSS region transcription start site region 107643
Tssr107644 11 48838545 to 48838559 14 - TSS region transcription start site region 107644
Tssr101151 11 48838672 to 48838714 42 + TSS region transcription start site region 101151
Gm16170 11 48843648 to 48853493 9845 - antisense lncRNA gene predicted gene 16170
Cpgi2784 11 48849494 to 48849934 440 CpG island CpG island 2784
Cpgi2785 11 48853253 to 48853492 239 CpG island CpG island 2785
n-TTtgt2 11 48853619 to 48853691 72 + tRNA gene nuclear encoded tRNA threonine 2 (anticodon TGT)
Cpgi2786 11 48853825 to 48854222 397 CpG island CpG island 2786
Cpgi2787 11 48855323 to 48855781 458 CpG island CpG island 2787
n-TPtgg4 11 48856280 to 48856351 71 + tRNA gene nuclear encoded tRNA proline 4 (anticodon TGG)
n-TVaac7 11 48856637 to 48856709 72 + tRNA gene nuclear encoded tRNA valine 7 (anticodon AAC)
Cpgi2788 11 48856873 to 48857097 224 CpG island CpG island 2788
n-TLaag6 11 48856974 to 48857055 81 - tRNA gene nuclear encoded tRNA leucine 6 (anticodon AAG)