Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:48671637-49041709

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm24422 11 48684709 to 48684827 118 + snoRNA gene predicted gene, 24422
Tssr101136 11 48716076 to 48716081 5 + TSS region transcription start site region 101136
Gm12182 11 48734554 to 48735561 1007 - pseudogene predicted gene 12182
Gm12183 11 48751867 to 48753714 1847 - pseudogene predicted gene 12183
Tssr107631 11 48752502 to 48752505 3 - TSS region transcription start site region 107631
Tssr107632 11 48753209 to 48753222 13 - TSS region transcription start site region 107632
Tssr107633 11 48753508 to 48753537 29 - TSS region transcription start site region 107633
Tssr101137 11 48782584 to 48782588 4 + TSS region transcription start site region 101137
Gm36109 11 48792314 to 48799948 7634 - lncRNA gene predicted gene, 36109
D11Mit309 11 48793142 to 48793265 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 309
Tssr107634 11 48799401 to 48799405 4 - TSS region transcription start site region 107634
Cpgi2778 11 48799955 to 48800882 927 CpG island CpG island 2778
Tssr107635 11 48799958 to 48800005 47 - TSS region transcription start site region 107635
Tssr101138 11 48800041 to 48800071 30 + TSS region transcription start site region 101138
Tssr101139 11 48800357 to 48800369 12 + TSS region transcription start site region 101139
Rack1 11 48800360 to 48806241 5881 + protein coding gene receptor for activated C kinase 1
Tssr101140 11 48800391 to 48800393 2 + TSS region transcription start site region 101140
Tssr101141 11 48800864 to 48800868 4 + TSS region transcription start site region 101141
Gm25296 11 48800866 to 48800932 66 + snoRNA gene predicted gene, 25296
Tssr101142 11 48801799 to 48801809 10 + TSS region transcription start site region 101142
Snord96a 11 48802033 to 48802109 76 + snoRNA gene small nucleolar RNA, C/D box 96A
Tssr101143 11 48802266 to 48802296 30 + TSS region transcription start site region 101143
Tssr101144 11 48802309 to 48802352 43 + TSS region transcription start site region 101144
Snord95 11 48803139 to 48803206 67 + snoRNA gene small nucleolar RNA, C/D box 95
Tssr101145 11 48803422 to 48803449 27 + TSS region transcription start site region 101145
Tssr107636 11 48805583 to 48805619 36 - TSS region transcription start site region 107636
Trim41 11 48806404 to 48817353 10949 - protein coding gene tripartite motif-containing 41
Tssr3482 11 48808459 to 48808465 6 - TSS region transcription start site region 3482
Tssr107637 11 48809046 to 48809050 4 - TSS region transcription start site region 107637
Cpgi2779 11 48816298 to 48817700 1402 CpG island CpG island 2779
Tssr107638 11 48816905 to 48816928 23 - TSS region transcription start site region 107638
Tssr107639 11 48816936 to 48816961 25 - TSS region transcription start site region 107639
Tssr101146 11 48817176 to 48817184 8 + TSS region transcription start site region 101146
Tssr107640 11 48817332 to 48817389 57 - TSS region transcription start site region 107640
Tssr101147 11 48817565 to 48817585 20 + TSS region transcription start site region 101147
n-TVcac7 11 48818542 to 48818614 72 + tRNA gene nuclear encoded tRNA valine 7 (anticodon CAC)
Cpgi2780 11 48821498 to 48821752 254 CpG island CpG island 2780
n-TGacc1 11 48823728 to 48823801 73 + tRNA gene nuclear encoded tRNA glycine 1 (anticodon ACC)
Cpgi2781 11 48824190 to 48824739 549 CpG island CpG island 2781
Gm12184 11 48825346 to 48826612 1266 - protein coding gene predicted gene 12184
Cpgi2782 11 48826055 to 48827066 1011 CpG island CpG island 2782
Trim7 11 48826138 to 48850644 24506 + protein coding gene tripartite motif-containing 7
Tssr107641 11 48826301 to 48826323 22 - TSS region transcription start site region 107641
Tssr107642 11 48826724 to 48826747 23 - TSS region transcription start site region 107642
n-TKctt10 11 48833883 to 48833955 72 - tRNA gene nuclear encoded tRNA lysine 10 (anticodon CTT)
n-TAtgc9 11 48834429 to 48834500 71 - tRNA gene nuclear encoded tRNA alanine 9 (anticodon TGC)
Cpgi2783 11 48837068 to 48838494 1426 CpG island CpG island 2783
Tssr101148 11 48837434 to 48837443 9 + TSS region transcription start site region 101148
Tssr101149 11 48837465 to 48837481 16 + TSS region transcription start site region 101149
Tssr101150 11 48837492 to 48837513 21 + TSS region transcription start site region 101150
Tssr107643 11 48838528 to 48838542 14 - TSS region transcription start site region 107643
Tssr107644 11 48838545 to 48838559 14 - TSS region transcription start site region 107644
Tssr101151 11 48838672 to 48838714 42 + TSS region transcription start site region 101151
Gm16170 11 48843648 to 48853493 9845 - antisense lncRNA gene predicted gene 16170
Cpgi2784 11 48849494 to 48849934 440 CpG island CpG island 2784
Cpgi2785 11 48853253 to 48853492 239 CpG island CpG island 2785
n-TTtgt2 11 48853619 to 48853691 72 + tRNA gene nuclear encoded tRNA threonine 2 (anticodon TGT)
Cpgi2786 11 48853825 to 48854222 397 CpG island CpG island 2786
Cpgi2787 11 48855323 to 48855781 458 CpG island CpG island 2787
n-TPtgg4 11 48856280 to 48856351 71 + tRNA gene nuclear encoded tRNA proline 4 (anticodon TGG)
n-TVaac7 11 48856637 to 48856709 72 + tRNA gene nuclear encoded tRNA valine 7 (anticodon AAC)
Cpgi2788 11 48856873 to 48857097 224 CpG island CpG island 2788
n-TLaag6 11 48856974 to 48857055 81 - tRNA gene nuclear encoded tRNA leucine 6 (anticodon AAG)
Irgm1 11 48865245 to 48871454 6209 - protein coding gene immunity-related GTPase family M member 1
Tssr107645 11 48866229 to 48866265 36 - TSS region transcription start site region 107645
Tssr107646 11 48866336 to 48866374 38 - TSS region transcription start site region 107646
Tssr107647 11 48866982 to 48867009 27 - TSS region transcription start site region 107647
Tssr107648 11 48868096 to 48868113 17 - TSS region transcription start site region 107648
Tssr107649 11 48868609 to 48868630 21 - TSS region transcription start site region 107649
Tssr107650 11 48871146 to 48871152 6 - TSS region transcription start site region 107650
Tssr107651 11 48871176 to 48871190 14 - TSS region transcription start site region 107651
Tssr107652 11 48871205 to 48871210 5 - TSS region transcription start site region 107652
Tssr107653 11 48871259 to 48871273 14 - TSS region transcription start site region 107653
Tssr107654 11 48871278 to 48871300 22 - TSS region transcription start site region 107654
Tssr107655 11 48871317 to 48871337 20 - TSS region transcription start site region 107655
Tssr107656 11 48871344 to 48871407 63 - TSS region transcription start site region 107656
Tssr107657 11 48871408 to 48871424 16 - TSS region transcription start site region 107657
Tssr101152 11 48871638 to 48871662 24 + TSS region transcription start site region 101152
Tssr101153 11 48871862 to 48871869 7 + TSS region transcription start site region 101153
Tssr107658 11 48872279 to 48872340 61 - TSS region transcription start site region 107658
Tssr107659 11 48872349 to 48872358 9 - TSS region transcription start site region 107659
Tssr101154 11 48872558 to 48872560 2 + TSS region transcription start site region 101154
Gm5431 11 48887422 to 48902152 14730 - protein coding gene predicted gene 5431
Tssr107660 11 48891540 to 48891565 25 - TSS region transcription start site region 107660
Tssr107661 11 48891638 to 48891645 7 - TSS region transcription start site region 107661
Tssr107662 11 48891661 to 48891687 26 - TSS region transcription start site region 107662
Tssr107663 11 48891791 to 48891804 13 - TSS region transcription start site region 107663
Tssr107664 11 48891884 to 48891895 11 - TSS region transcription start site region 107664
Tssr107665 11 48891990 to 48892001 11 - TSS region transcription start site region 107665
Tssr107666 11 48892026 to 48892041 15 - TSS region transcription start site region 107666
Tssr107667 11 48892128 to 48892131 3 - TSS region transcription start site region 107667
Tssr107668 11 48892156 to 48892166 10 - TSS region transcription start site region 107668
Tssr107669 11 48893379 to 48893401 22 - TSS region transcription start site region 107669
Tssr107670 11 48893415 to 48893432 17 - TSS region transcription start site region 107670
Tssr101155 11 48901299 to 48901313 14 + TSS region transcription start site region 101155
Tssr101156 11 48901314 to 48901339 25 + TSS region transcription start site region 101156
Tssr107671 11 48902011 to 48902044 33 - TSS region transcription start site region 107671
Tssr107672 11 48902104 to 48902128 24 - TSS region transcription start site region 107672
Tssr107673 11 48902151 to 48902201 50 - TSS region transcription start site region 107673
Tssr101157 11 48902286 to 48902299 13 + TSS region transcription start site region 101157
Gm12185 11 48904656 to 48927182 22526 - protein coding gene predicted gene 12185
Tssr101158 11 48910578 to 48910580 2 + TSS region transcription start site region 101158
Tssr107674 11 48913950 to 48913960 10 - TSS region transcription start site region 107674
Tssr107675 11 48927177 to 48927182 5 - TSS region transcription start site region 107675
Tssr107676 11 48928224 to 48928229 5 - TSS region transcription start site region 107676
Tssr107677 11 48945241 to 48945263 22 - TSS region transcription start site region 107677
Psme2b 11 48945354 to 48946190 836 - protein coding gene protease (prosome, macropain) activator subunit 2B
Tssr107678 11 48945485 to 48945517 32 - TSS region transcription start site region 107678
Tssr107679 11 48946148 to 48946150 2 - TSS region transcription start site region 107679
9930111J21Rik1 11 48946150 to 48979381 33231 - protein coding gene RIKEN cDNA 9930111J21 gene 1
Gm42074 11 48977630 to 48991996 14366 + lncRNA gene predicted gene, 42074
Tgtp1 11 48985329 to 48992246 6917 - protein coding gene T cell specific GTPase 1
Tssr107680 11 48992257 to 48992279 22 - TSS region transcription start site region 107680
Tssr107681 11 48992305 to 48992320 15 - TSS region transcription start site region 107681
Tssr107682 11 48994182 to 48994186 4 - TSS region transcription start site region 107682
Gm12186 11 48996674 to 48997713 1039 - pseudogene predicted gene 12186
Tssr107683 11 48997116 to 48997128 12 - TSS region transcription start site region 107683
Tssr107684 11 48997780 to 48997786 6 - TSS region transcription start site region 107684
Tssr107685 11 49017354 to 49017381 27 - TSS region transcription start site region 107685
9930111J21Rik2 11 49037660 to 49051242 13582 - protein coding gene RIKEN cDNA 9930111J21 gene 2