Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:48243355-48894015

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102 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12178 11 48289984 to 48290313 329 - pseudogene predicted gene 12178
Tssr107630 11 48349232 to 48349234 2 - TSS region transcription start site region 107630
Gm39818 11 48378300 to 48384324 6024 + lncRNA gene predicted gene, 39818
D11Mit176 11 48487712 to 48487835 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 176
D11Nds3 11 48487725 to 48487821 96 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 3
Gm12179 11 48551253 to 48552524 1271 - pseudogene predicted gene 12179
Gm12180 11 48568355 to 48569015 660 + pseudogene predicted gene 12180
Gm12181 11 48595279 to 48595809 530 + pseudogene predicted gene 12181
Gm24422 11 48684709 to 48684827 118 + snoRNA gene predicted gene, 24422
Tssr101136 11 48716076 to 48716081 5 + TSS region transcription start site region 101136
Gm12182 11 48734554 to 48735561 1007 - pseudogene predicted gene 12182
Gm12183 11 48751867 to 48753714 1847 - pseudogene predicted gene 12183
Tssr107631 11 48752502 to 48752505 3 - TSS region transcription start site region 107631
Tssr107632 11 48753209 to 48753222 13 - TSS region transcription start site region 107632
Tssr107633 11 48753508 to 48753537 29 - TSS region transcription start site region 107633
Tssr101137 11 48782584 to 48782588 4 + TSS region transcription start site region 101137
Gm36109 11 48792314 to 48799948 7634 - lncRNA gene predicted gene, 36109
D11Mit309 11 48793142 to 48793265 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 309
Tssr107634 11 48799401 to 48799405 4 - TSS region transcription start site region 107634
Cpgi2778 11 48799955 to 48800882 927 CpG island CpG island 2778
Tssr107635 11 48799958 to 48800005 47 - TSS region transcription start site region 107635
Tssr101138 11 48800041 to 48800071 30 + TSS region transcription start site region 101138
Tssr101139 11 48800357 to 48800369 12 + TSS region transcription start site region 101139
Rack1 11 48800360 to 48806241 5881 + protein coding gene receptor for activated C kinase 1
Tssr101140 11 48800391 to 48800393 2 + TSS region transcription start site region 101140
Tssr101141 11 48800864 to 48800868 4 + TSS region transcription start site region 101141
Gm25296 11 48800866 to 48800932 66 + snoRNA gene predicted gene, 25296
Tssr101142 11 48801799 to 48801809 10 + TSS region transcription start site region 101142
Snord96a 11 48802033 to 48802109 76 + snoRNA gene small nucleolar RNA, C/D box 96A
Tssr101143 11 48802266 to 48802296 30 + TSS region transcription start site region 101143
Tssr101144 11 48802309 to 48802352 43 + TSS region transcription start site region 101144
Snord95 11 48803139 to 48803206 67 + snoRNA gene small nucleolar RNA, C/D box 95
Tssr101145 11 48803422 to 48803449 27 + TSS region transcription start site region 101145
Tssr107636 11 48805583 to 48805619 36 - TSS region transcription start site region 107636
Trim41 11 48806404 to 48817353 10949 - protein coding gene tripartite motif-containing 41
Tssr3482 11 48808459 to 48808465 6 - TSS region transcription start site region 3482
Tssr107637 11 48809046 to 48809050 4 - TSS region transcription start site region 107637
Cpgi2779 11 48816298 to 48817700 1402 CpG island CpG island 2779
Tssr107638 11 48816905 to 48816928 23 - TSS region transcription start site region 107638
Tssr107639 11 48816936 to 48816961 25 - TSS region transcription start site region 107639
Tssr101146 11 48817176 to 48817184 8 + TSS region transcription start site region 101146
Tssr107640 11 48817332 to 48817389 57 - TSS region transcription start site region 107640
Tssr101147 11 48817565 to 48817585 20 + TSS region transcription start site region 101147
n-TVcac7 11 48818542 to 48818614 72 + tRNA gene nuclear encoded tRNA valine 7 (anticodon CAC)
Cpgi2780 11 48821498 to 48821752 254 CpG island CpG island 2780
n-TGacc1 11 48823728 to 48823801 73 + tRNA gene nuclear encoded tRNA glycine 1 (anticodon ACC)
Cpgi2781 11 48824190 to 48824739 549 CpG island CpG island 2781
Gm12184 11 48825346 to 48826612 1266 - protein coding gene predicted gene 12184
Cpgi2782 11 48826055 to 48827066 1011 CpG island CpG island 2782
Trim7 11 48826138 to 48850644 24506 + protein coding gene tripartite motif-containing 7
Tssr107641 11 48826301 to 48826323 22 - TSS region transcription start site region 107641
Tssr107642 11 48826724 to 48826747 23 - TSS region transcription start site region 107642
n-TKctt10 11 48833883 to 48833955 72 - tRNA gene nuclear encoded tRNA lysine 10 (anticodon CTT)
n-TAtgc9 11 48834429 to 48834500 71 - tRNA gene nuclear encoded tRNA alanine 9 (anticodon TGC)
Cpgi2783 11 48837068 to 48838494 1426 CpG island CpG island 2783
Tssr101148 11 48837434 to 48837443 9 + TSS region transcription start site region 101148
Tssr101149 11 48837465 to 48837481 16 + TSS region transcription start site region 101149
Tssr101150 11 48837492 to 48837513 21 + TSS region transcription start site region 101150
Tssr107643 11 48838528 to 48838542 14 - TSS region transcription start site region 107643
Tssr107644 11 48838545 to 48838559 14 - TSS region transcription start site region 107644
Tssr101151 11 48838672 to 48838714 42 + TSS region transcription start site region 101151
Gm16170 11 48843648 to 48853493 9845 - antisense lncRNA gene predicted gene 16170
Cpgi2784 11 48849494 to 48849934 440 CpG island CpG island 2784
Cpgi2785 11 48853253 to 48853492 239 CpG island CpG island 2785
n-TTtgt2 11 48853619 to 48853691 72 + tRNA gene nuclear encoded tRNA threonine 2 (anticodon TGT)
Cpgi2786 11 48853825 to 48854222 397 CpG island CpG island 2786
Cpgi2787 11 48855323 to 48855781 458 CpG island CpG island 2787
n-TPtgg4 11 48856280 to 48856351 71 + tRNA gene nuclear encoded tRNA proline 4 (anticodon TGG)
n-TVaac7 11 48856637 to 48856709 72 + tRNA gene nuclear encoded tRNA valine 7 (anticodon AAC)
Cpgi2788 11 48856873 to 48857097 224 CpG island CpG island 2788
n-TLaag6 11 48856974 to 48857055 81 - tRNA gene nuclear encoded tRNA leucine 6 (anticodon AAG)
Irgm1 11 48865245 to 48871454 6209 - protein coding gene immunity-related GTPase family M member 1
Tssr107645 11 48866229 to 48866265 36 - TSS region transcription start site region 107645
Tssr107646 11 48866336 to 48866374 38 - TSS region transcription start site region 107646
Tssr107647 11 48866982 to 48867009 27 - TSS region transcription start site region 107647
Tssr107648 11 48868096 to 48868113 17 - TSS region transcription start site region 107648
Tssr107649 11 48868609 to 48868630 21 - TSS region transcription start site region 107649
Tssr107650 11 48871146 to 48871152 6 - TSS region transcription start site region 107650
Tssr107651 11 48871176 to 48871190 14 - TSS region transcription start site region 107651
Tssr107652 11 48871205 to 48871210 5 - TSS region transcription start site region 107652
Tssr107653 11 48871259 to 48871273 14 - TSS region transcription start site region 107653
Tssr107654 11 48871278 to 48871300 22 - TSS region transcription start site region 107654
Tssr107655 11 48871317 to 48871337 20 - TSS region transcription start site region 107655
Tssr107656 11 48871344 to 48871407 63 - TSS region transcription start site region 107656
Tssr107657 11 48871408 to 48871424 16 - TSS region transcription start site region 107657
Tssr101152 11 48871638 to 48871662 24 + TSS region transcription start site region 101152
Tssr101153 11 48871862 to 48871869 7 + TSS region transcription start site region 101153
Tssr107658 11 48872279 to 48872340 61 - TSS region transcription start site region 107658
Tssr107659 11 48872349 to 48872358 9 - TSS region transcription start site region 107659
Tssr101154 11 48872558 to 48872560 2 + TSS region transcription start site region 101154
Gm5431 11 48887422 to 48902152 14730 - protein coding gene predicted gene 5431
Tssr107660 11 48891540 to 48891565 25 - TSS region transcription start site region 107660
Tssr107661 11 48891638 to 48891645 7 - TSS region transcription start site region 107661
Tssr107662 11 48891661 to 48891687 26 - TSS region transcription start site region 107662
Tssr107663 11 48891791 to 48891804 13 - TSS region transcription start site region 107663
Tssr107664 11 48891884 to 48891895 11 - TSS region transcription start site region 107664
Tssr107665 11 48891990 to 48892001 11 - TSS region transcription start site region 107665
Tssr107666 11 48892026 to 48892041 15 - TSS region transcription start site region 107666
Tssr107667 11 48892128 to 48892131 3 - TSS region transcription start site region 107667
Tssr107668 11 48892156 to 48892166 10 - TSS region transcription start site region 107668
Tssr107669 11 48893379 to 48893401 22 - TSS region transcription start site region 107669
Tssr107670 11 48893415 to 48893432 17 - TSS region transcription start site region 107670