Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:46355705-48125718

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Itk 11 46325150 to 46389515 64365 - protein coding gene IL2 inducible T cell kinase
Tssr107601 11 46358030 to 46358031 1 - TSS region transcription start site region 107601
Tssr107602 11 46363822 to 46363868 46 - TSS region transcription start site region 107602
Tssr107603 11 46372403 to 46372443 40 - TSS region transcription start site region 107603
Tssr101104 11 46372886 to 46372899 13 + TSS region transcription start site region 101104
5830453J16Rik 11 46377728 to 46378580 852 unclassified gene RIKEN cDNA 5830453J16 gene
Tssr107604 11 46378330 to 46378348 18 - TSS region transcription start site region 107604
Tssr107605 11 46386608 to 46386622 14 - TSS region transcription start site region 107605
Tssr101105 11 46386740 to 46386753 13 + TSS region transcription start site region 101105
Tssr101106 11 46386820 to 46386829 9 + TSS region transcription start site region 101106
Tssr107606 11 46388549 to 46388588 39 - TSS region transcription start site region 107606
Tssr107607 11 46389425 to 46389448 23 - TSS region transcription start site region 107607
Tssr107608 11 46389454 to 46389467 13 - TSS region transcription start site region 107608
Tssr107609 11 46389471 to 46389505 34 - TSS region transcription start site region 107609
Tssr107610 11 46389509 to 46389525 16 - TSS region transcription start site region 107610
Tssr107611 11 46389586 to 46389591 5 - TSS region transcription start site region 107611
Tssr101107 11 46389720 to 46389729 9 + TSS region transcription start site region 101107
Tssr101108 11 46396548 to 46396575 27 + TSS region transcription start site region 101108
Tssr101109 11 46404720 to 46404730 10 + TSS region transcription start site region 101109
Fam71b 11 46404728 to 46407985 3257 + protein coding gene family with sequence similarity 71, member B
Cpgi2776 11 46436791 to 46437746 955 CpG island CpG island 2776
Tssr101110 11 46436930 to 46436941 11 + TSS region transcription start site region 101110
Med7 11 46436937 to 46442721 5784 + protein coding gene mediator complex subunit 7
Tssr101111 11 46436942 to 46437017 75 + TSS region transcription start site region 101111
Tssr101112 11 46437031 to 46437050 19 + TSS region transcription start site region 101112
Tssr101113 11 46437065 to 46437088 23 + TSS region transcription start site region 101113
Tssr101114 11 46437486 to 46437512 26 + TSS region transcription start site region 101114
2310031A07Rik 11 46440362 to 46447248 6886 - lincRNA gene RIKEN cDNA 2310031A07 gene
Tssr107612 11 46447259 to 46447270 11 - TSS region transcription start site region 107612
Gm12168 11 46450980 to 46451347 367 - pseudogene predicted gene 12168
Tssr107613 11 46451340 to 46451367 27 - TSS region transcription start site region 107613
Tssr101115 11 46454921 to 46454946 25 + TSS region transcription start site region 101115
Havcr2 11 46454935 to 46481255 26320 + protein coding gene hepatitis A virus cellular receptor 2
Tssr101116 11 46454957 to 46454984 27 + TSS region transcription start site region 101116
Tssr101117 11 46479983 to 46479995 12 + TSS region transcription start site region 101117
Tssr101118 11 46480298 to 46480322 24 + TSS region transcription start site region 101118
Gm12169 11 46524251 to 46538156 13905 + protein coding gene predicted gene 12169
Acigg5 11 46528416 to 62992617 16464201 QTL anti COL7 IgG2a/c antibody 5
Gm12170 11 46539782 to 46540081 299 - pseudogene predicted gene 12170
Gm12171 11 46548413 to 46556068 7655 + lincRNA gene predicted gene 12171
Tssr101119 11 46562004 to 46562006 2 + TSS region transcription start site region 101119
Rpl9-ps2 11 46562031 to 46562607 576 + pseudogene ribosomal protein L9, pseudogene 2
BC053393 11 46571536 to 46589232 17696 + protein coding gene cDNA sequence BC053393
Dppa1 11 46607772 to 46629261 21489 - protein coding gene developmental pluripotency associated 1
Gm4926 11 46636516 to 46645006 8490 - lincRNA gene predicted gene 4926
Gm12173 11 46646687 to 46646959 272 - pseudogene predicted gene 12173
Timd2 11 46668960 to 46707061 38101 - protein coding gene T cell immunoglobulin and mucin domain containing 2
Tssr107614 11 46690306 to 46690320 14 - TSS region transcription start site region 107614
Tssr107615 11 46698608 to 46698623 15 - TSS region transcription start site region 107615
Tssr107616 11 46698819 to 46698835 16 - TSS region transcription start site region 107616
Tssr107617 11 46699049 to 46699075 26 - TSS region transcription start site region 107617
Tssr107618 11 46707060 to 46707077 17 - TSS region transcription start site region 107618
Tssr3476 11 46707088 to 46707091 3 - TSS region transcription start site region 3476
Tssr107619 11 46707097 to 46707112 15 - TSS region transcription start site region 107619
Tssr101120 11 46727782 to 46727792 10 + TSS region transcription start site region 101120
Gm12174 11 46727818 to 46728630 812 + pseudogene predicted gene 12174
Tssr101121 11 46739783 to 46739798 15 + TSS region transcription start site region 101121
Havcr1 11 46739822 to 46779578 39756 + protein coding gene hepatitis A virus cellular receptor 1
Tssr101122 11 46739827 to 46739840 13 + TSS region transcription start site region 101122
Tssr3477 11 46740216 to 46740227 11 + TSS region transcription start site region 3477
Tssr3478 11 46750482 to 46750491 9 + TSS region transcription start site region 3478
Tssr101123 11 46750506 to 46750543 37 + TSS region transcription start site region 101123
Tssr101124 11 46750562 to 46750577 15 + TSS region transcription start site region 101124
Tssr101125 11 46750596 to 46750605 9 + TSS region transcription start site region 101125
Tssr101126 11 46750609 to 46750617 8 + TSS region transcription start site region 101126
Tssr101127 11 46752406 to 46752414 8 + TSS region transcription start site region 101127
Gm39817 11 46798614 to 46804955 6341 - lncRNA gene predicted gene, 39817
Tssr101128 11 46810792 to 46810809 17 + TSS region transcription start site region 101128
Timd4 11 46810800 to 46844332 33532 + protein coding gene T cell immunoglobulin and mucin domain containing 4
Tssr101129 11 46815531 to 46815542 11 + TSS region transcription start site region 101129
Tssr101130 11 46815684 to 46815709 25 + TSS region transcription start site region 101130
Tssr101131 11 46815717 to 46815738 21 + TSS region transcription start site region 101131
Tssr101132 11 46817537 to 46817564 27 + TSS region transcription start site region 101132
Tssr101133 11 46817572 to 46817590 18 + TSS region transcription start site region 101133
Tssr101134 11 46821461 to 46821466 5 + TSS region transcription start site region 101134
Gm12175 11 46874413 to 46874757 344 + pseudogene predicted gene 12175
A530047J11Rik 11 46971075 to 46971869 794 unclassified non-coding RNA gene RIKEN cDNA A530047J11 gene
Sgcd 11 46971077 to 47988851 1017774 - protein coding gene sarcoglycan, delta (dystrophin-associated glycoprotein)
Tssr3479 11 47097682 to 47097691 9 + TSS region transcription start site region 3479
Tssr107620 11 47105734 to 47105737 3 - TSS region transcription start site region 107620
Tssr107621 11 47240705 to 47240718 13 - TSS region transcription start site region 107621
Tssr3480 11 47282893 to 47282895 2 + TSS region transcription start site region 3480
Tssr107622 11 47379278 to 47379297 19 - TSS region transcription start site region 107622
Tssr107623 11 47379306 to 47379344 38 - TSS region transcription start site region 107623
Tssr107624 11 47379352 to 47379368 16 - TSS region transcription start site region 107624
Tssr107625 11 47379374 to 47379395 21 - TSS region transcription start site region 107625
Tssr107626 11 47379405 to 47379414 9 - TSS region transcription start site region 107626
Gm46256 11 47422101 to 47425504 3403 + pseudogene predicted gene, 46256
D11Mit239 11 47450141 to 47450429 288 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 239
Gm12176 11 47541432 to 47542306 874 + pseudogene predicted gene 12176
D11Mit190 11 47781479 to 47781625 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 190
D11Mit191 11 47889093 to 47889238 145 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 191
Gm23039 11 47912385 to 47912545 160 - snRNA gene predicted gene, 23039
Tssr101135 11 47933917 to 47933921 4 + TSS region transcription start site region 101135
Tssr107627 11 47985152 to 47985176 24 - TSS region transcription start site region 107627
Cpgi2777 11 47988061 to 47989567 1506 CpG island CpG island 2777
Tssr3481 11 47988426 to 47988437 11 - TSS region transcription start site region 3481
Tssr107628 11 47988962 to 47988980 18 - TSS region transcription start site region 107628
Tssr107629 11 47989386 to 47989409 23 - TSS region transcription start site region 107629
Cocia18 11 48117382 to 48117382 0 QTL cocaine-induced activity, QTL 18