Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:46177031-46697050

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35624 11 46165313 to 46193869 28556 + lncRNA gene predicted gene, 35624
Cyfip2 11 46193850 to 46312859 119009 - protein coding gene cytoplasmic FMR1 interacting protein 2
Tssr107588 11 46196030 to 46196041 11 - TSS region transcription start site region 107588
Tssr107589 11 46196051 to 46196067 16 - TSS region transcription start site region 107589
Tssr107590 11 46221400 to 46221409 9 - TSS region transcription start site region 107590
Tssr107591 11 46221425 to 46221439 14 - TSS region transcription start site region 107591
Tssr101099 11 46222583 to 46222594 11 + TSS region transcription start site region 101099
Tssr101100 11 46222602 to 46222626 24 + TSS region transcription start site region 101100
Tssr101101 11 46222631 to 46222668 37 + TSS region transcription start site region 101101
Tssr101102 11 46227138 to 46227145 7 + TSS region transcription start site region 101102
Tssr101103 11 46235460 to 46235471 11 + TSS region transcription start site region 101103
Fndc9 11 46235557 to 46239871 4314 + protein coding gene fibronectin type III domain containing 9
Tssr107592 11 46237214 to 46237216 2 - TSS region transcription start site region 107592
Tssr107593 11 46238803 to 46238807 4 - TSS region transcription start site region 107593
Gm12568 11 46243571 to 46244194 623 - pseudogene predicted gene 12568
Tssr107594 11 46253999 to 46254009 10 - TSS region transcription start site region 107594
Tssr107595 11 46266025 to 46266036 11 - TSS region transcription start site region 107595
Tssr107596 11 46287008 to 46287011 3 - TSS region transcription start site region 107596
Tssr107597 11 46291535 to 46291578 43 - TSS region transcription start site region 107597
Cpgi2775 11 46311528 to 46312844 1316 CpG island CpG island 2775
Tssr107598 11 46312069 to 46312119 50 - TSS region transcription start site region 107598
Tssr107599 11 46312283 to 46312338 55 - TSS region transcription start site region 107599
Itk 11 46325150 to 46389515 64365 - protein coding gene IL2 inducible T cell kinase
Tssr107600 11 46326865 to 46326897 32 - TSS region transcription start site region 107600
Gm12167 11 46342287 to 46345020 2733 + antisense lncRNA gene predicted gene 12167
Tssr107601 11 46358030 to 46358031 1 - TSS region transcription start site region 107601
Tssr107602 11 46363822 to 46363868 46 - TSS region transcription start site region 107602
Tssr107603 11 46372403 to 46372443 40 - TSS region transcription start site region 107603
Tssr101104 11 46372886 to 46372899 13 + TSS region transcription start site region 101104
5830453J16Rik 11 46377728 to 46378580 852 unclassified gene RIKEN cDNA 5830453J16 gene
Tssr107604 11 46378330 to 46378348 18 - TSS region transcription start site region 107604
Tssr107605 11 46386608 to 46386622 14 - TSS region transcription start site region 107605
Tssr101105 11 46386740 to 46386753 13 + TSS region transcription start site region 101105
Tssr101106 11 46386820 to 46386829 9 + TSS region transcription start site region 101106
Tssr107606 11 46388549 to 46388588 39 - TSS region transcription start site region 107606
Tssr107607 11 46389425 to 46389448 23 - TSS region transcription start site region 107607
Tssr107608 11 46389454 to 46389467 13 - TSS region transcription start site region 107608
Tssr107609 11 46389471 to 46389505 34 - TSS region transcription start site region 107609
Tssr107610 11 46389509 to 46389525 16 - TSS region transcription start site region 107610
Tssr107611 11 46389586 to 46389591 5 - TSS region transcription start site region 107611
Tssr101107 11 46389720 to 46389729 9 + TSS region transcription start site region 101107
Tssr101108 11 46396548 to 46396575 27 + TSS region transcription start site region 101108
Tssr101109 11 46404720 to 46404730 10 + TSS region transcription start site region 101109
Fam71b 11 46404728 to 46407985 3257 + protein coding gene family with sequence similarity 71, member B
Cpgi2776 11 46436791 to 46437746 955 CpG island CpG island 2776
Tssr101110 11 46436930 to 46436941 11 + TSS region transcription start site region 101110
Med7 11 46436937 to 46442721 5784 + protein coding gene mediator complex subunit 7
Tssr101111 11 46436942 to 46437017 75 + TSS region transcription start site region 101111
Tssr101112 11 46437031 to 46437050 19 + TSS region transcription start site region 101112
Tssr101113 11 46437065 to 46437088 23 + TSS region transcription start site region 101113
Tssr101114 11 46437486 to 46437512 26 + TSS region transcription start site region 101114
2310031A07Rik 11 46440362 to 46447248 6886 - lincRNA gene RIKEN cDNA 2310031A07 gene
Tssr107612 11 46447259 to 46447270 11 - TSS region transcription start site region 107612
Gm12168 11 46450980 to 46451347 367 - pseudogene predicted gene 12168
Tssr107613 11 46451340 to 46451367 27 - TSS region transcription start site region 107613
Tssr101115 11 46454921 to 46454946 25 + TSS region transcription start site region 101115
Havcr2 11 46454935 to 46481255 26320 + protein coding gene hepatitis A virus cellular receptor 2
Tssr101116 11 46454957 to 46454984 27 + TSS region transcription start site region 101116
Tssr101117 11 46479983 to 46479995 12 + TSS region transcription start site region 101117
Tssr101118 11 46480298 to 46480322 24 + TSS region transcription start site region 101118
Gm12169 11 46524251 to 46538156 13905 + protein coding gene predicted gene 12169
Acigg5 11 46528416 to 62992617 16464201 QTL anti COL7 IgG2a/c antibody 5
Gm12170 11 46539782 to 46540081 299 - pseudogene predicted gene 12170
Gm12171 11 46548413 to 46556068 7655 + lincRNA gene predicted gene 12171
Tssr101119 11 46562004 to 46562006 2 + TSS region transcription start site region 101119
Rpl9-ps2 11 46562031 to 46562607 576 + pseudogene ribosomal protein L9, pseudogene 2
BC053393 11 46571536 to 46589232 17696 + protein coding gene cDNA sequence BC053393
Dppa1 11 46607772 to 46629261 21489 - protein coding gene developmental pluripotency associated 1
Gm4926 11 46636516 to 46645006 8490 - lincRNA gene predicted gene 4926
Gm12173 11 46646687 to 46646959 272 - pseudogene predicted gene 12173
Timd2 11 46668960 to 46707061 38101 - protein coding gene T cell immunoglobulin and mucin domain containing 2
Tssr107614 11 46690306 to 46690320 14 - TSS region transcription start site region 107614