Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:46022712-50952835

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642 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pwbwq14 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 14
Pwgrq20 11 27248057 to 50745267 23497210 QTL post-weaning growth rate QTL 20
Pwbwq16 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 16
Pwbwq15 11 27248057 to 50745267 23497210 QTL post-weaning body weight QTL 15
Ogrq5 11 27248057 to 50745267 23497210 QTL overall growth rate QTL 5
Gm12165 11 46036440 to 46036781 341 + pseudogene predicted gene 12165
Gm12166 11 46051354 to 46052321 967 - protein coding gene predicted gene 12166
Cpgi2772 11 46055844 to 46056627 783 CpG island CpG island 2772
Tssr3474 11 46055947 to 46055967 20 + TSS region transcription start site region 3474
Tssr101088 11 46055973 to 46056068 95 + TSS region transcription start site region 101088
Adam19 11 46055992 to 46147343 91351 + protein coding gene a disintegrin and metallopeptidase domain 19 (meltrin beta)
Tssr101089 11 46056088 to 46056097 9 + TSS region transcription start site region 101089
Tssr101090 11 46056165 to 46056175 10 + TSS region transcription start site region 101090
Tssr101091 11 46056223 to 46056230 7 + TSS region transcription start site region 101091
Cpgi2773 11 46057062 to 46057301 239 CpG island CpG island 2773
Tssr107582 11 46058109 to 46058132 23 - TSS region transcription start site region 107582
Tssr107583 11 46058174 to 46058195 21 - TSS region transcription start site region 107583
Tssr101092 11 46060903 to 46060912 9 + TSS region transcription start site region 101092
Tssr3475 11 46083700 to 46083716 16 + TSS region transcription start site region 3475
Tssr107584 11 46083797 to 46083807 10 - TSS region transcription start site region 107584
Tssr101093 11 46086665 to 46086674 9 + TSS region transcription start site region 101093
Tssr101094 11 46086686 to 46086696 10 + TSS region transcription start site region 101094
Tssr107585 11 46087150 to 46087156 6 - TSS region transcription start site region 107585
Mir8100 11 46102270 to 46102390 120 + miRNA gene microRNA 8100
Tssr101095 11 46123112 to 46123131 19 + TSS region transcription start site region 101095
Tssr101096 11 46123616 to 46123620 4 + TSS region transcription start site region 101096
Tssr101097 11 46124997 to 46125017 20 + TSS region transcription start site region 101097
Tssr101098 11 46127265 to 46127269 4 + TSS region transcription start site region 101098
Gm16033 11 46143783 to 46147116 3333 - antisense lncRNA gene predicted gene 16033
Gm16034 11 46143897 to 46145014 1117 - antisense lncRNA gene predicted gene 16034
Nipal4 11 46148155 to 46166359 18204 - protein coding gene NIPA-like domain containing 4
Gm35624 11 46165313 to 46193869 28556 + lncRNA gene predicted gene, 35624
Cpgi2774 11 46166041 to 46166609 568 CpG island CpG island 2774
Tssr107586 11 46166328 to 46166384 56 - TSS region transcription start site region 107586
Tssr107587 11 46166397 to 46166407 10 - TSS region transcription start site region 107587
Mir7239 11 46170087 to 46170143 56 + miRNA gene microRNA 7239
Cyfip2 11 46193850 to 46312859 119009 - protein coding gene cytoplasmic FMR1 interacting protein 2
Tssr107588 11 46196030 to 46196041 11 - TSS region transcription start site region 107588
Tssr107589 11 46196051 to 46196067 16 - TSS region transcription start site region 107589
Tssr107590 11 46221400 to 46221409 9 - TSS region transcription start site region 107590
Tssr107591 11 46221425 to 46221439 14 - TSS region transcription start site region 107591
Tssr101099 11 46222583 to 46222594 11 + TSS region transcription start site region 101099
Tssr101100 11 46222602 to 46222626 24 + TSS region transcription start site region 101100
Tssr101101 11 46222631 to 46222668 37 + TSS region transcription start site region 101101
Tssr101102 11 46227138 to 46227145 7 + TSS region transcription start site region 101102
Tssr101103 11 46235460 to 46235471 11 + TSS region transcription start site region 101103
Fndc9 11 46235557 to 46239871 4314 + protein coding gene fibronectin type III domain containing 9
Tssr107592 11 46237214 to 46237216 2 - TSS region transcription start site region 107592
Tssr107593 11 46238803 to 46238807 4 - TSS region transcription start site region 107593
Gm12568 11 46243571 to 46244194 623 - pseudogene predicted gene 12568
Tssr107594 11 46253999 to 46254009 10 - TSS region transcription start site region 107594
Tssr107595 11 46266025 to 46266036 11 - TSS region transcription start site region 107595
Tssr107596 11 46287008 to 46287011 3 - TSS region transcription start site region 107596
Tssr107597 11 46291535 to 46291578 43 - TSS region transcription start site region 107597
Cpgi2775 11 46311528 to 46312844 1316 CpG island CpG island 2775
Tssr107598 11 46312069 to 46312119 50 - TSS region transcription start site region 107598
Tssr107599 11 46312283 to 46312338 55 - TSS region transcription start site region 107599
Itk 11 46325150 to 46389515 64365 - protein coding gene IL2 inducible T cell kinase
Tssr107600 11 46326865 to 46326897 32 - TSS region transcription start site region 107600
Gm12167 11 46342287 to 46345020 2733 + antisense lncRNA gene predicted gene 12167
Tssr107601 11 46358030 to 46358031 1 - TSS region transcription start site region 107601
Tssr107602 11 46363822 to 46363868 46 - TSS region transcription start site region 107602
Tssr107603 11 46372403 to 46372443 40 - TSS region transcription start site region 107603
Tssr101104 11 46372886 to 46372899 13 + TSS region transcription start site region 101104
5830453J16Rik 11 46377728 to 46378580 852 unclassified gene RIKEN cDNA 5830453J16 gene
Tssr107604 11 46378330 to 46378348 18 - TSS region transcription start site region 107604
Tssr107605 11 46386608 to 46386622 14 - TSS region transcription start site region 107605
Tssr101105 11 46386740 to 46386753 13 + TSS region transcription start site region 101105
Tssr101106 11 46386820 to 46386829 9 + TSS region transcription start site region 101106
Tssr107606 11 46388549 to 46388588 39 - TSS region transcription start site region 107606
Tssr107607 11 46389425 to 46389448 23 - TSS region transcription start site region 107607
Tssr107608 11 46389454 to 46389467 13 - TSS region transcription start site region 107608
Tssr107609 11 46389471 to 46389505 34 - TSS region transcription start site region 107609
Tssr107610 11 46389509 to 46389525 16 - TSS region transcription start site region 107610
Tssr107611 11 46389586 to 46389591 5 - TSS region transcription start site region 107611
Tssr101107 11 46389720 to 46389729 9 + TSS region transcription start site region 101107
Tssr101108 11 46396548 to 46396575 27 + TSS region transcription start site region 101108
Tssr101109 11 46404720 to 46404730 10 + TSS region transcription start site region 101109
Fam71b 11 46404728 to 46407985 3257 + protein coding gene family with sequence similarity 71, member B
Cpgi2776 11 46436791 to 46437746 955 CpG island CpG island 2776
Tssr101110 11 46436930 to 46436941 11 + TSS region transcription start site region 101110
Med7 11 46436937 to 46442721 5784 + protein coding gene mediator complex subunit 7
Tssr101111 11 46436942 to 46437017 75 + TSS region transcription start site region 101111
Tssr101112 11 46437031 to 46437050 19 + TSS region transcription start site region 101112
Tssr101113 11 46437065 to 46437088 23 + TSS region transcription start site region 101113
Tssr101114 11 46437486 to 46437512 26 + TSS region transcription start site region 101114
2310031A07Rik 11 46440362 to 46447248 6886 - lincRNA gene RIKEN cDNA 2310031A07 gene
Tssr107612 11 46447259 to 46447270 11 - TSS region transcription start site region 107612
Gm12168 11 46450980 to 46451347 367 - pseudogene predicted gene 12168
Tssr107613 11 46451340 to 46451367 27 - TSS region transcription start site region 107613
Tssr101115 11 46454921 to 46454946 25 + TSS region transcription start site region 101115
Havcr2 11 46454935 to 46481255 26320 + protein coding gene hepatitis A virus cellular receptor 2
Tssr101116 11 46454957 to 46454984 27 + TSS region transcription start site region 101116
Tssr101117 11 46479983 to 46479995 12 + TSS region transcription start site region 101117
Tssr101118 11 46480298 to 46480322 24 + TSS region transcription start site region 101118
Gm12169 11 46524251 to 46538156 13905 + protein coding gene predicted gene 12169
Acigg5 11 46528416 to 62992617 16464201 QTL anti COL7 IgG2a/c antibody 5
Gm12170 11 46539782 to 46540081 299 - pseudogene predicted gene 12170
Gm12171 11 46548413 to 46556068 7655 + lincRNA gene predicted gene 12171
Tssr101119 11 46562004 to 46562006 2 + TSS region transcription start site region 101119
Rpl9-ps2 11 46562031 to 46562607 576 + pseudogene ribosomal protein L9, pseudogene 2
BC053393 11 46571536 to 46589232 17696 + protein coding gene cDNA sequence BC053393
Dppa1 11 46607772 to 46629261 21489 - protein coding gene developmental pluripotency associated 1
Gm4926 11 46636516 to 46645006 8490 - lincRNA gene predicted gene 4926
Gm12173 11 46646687 to 46646959 272 - pseudogene predicted gene 12173
Timd2 11 46668960 to 46707061 38101 - protein coding gene T cell immunoglobulin and mucin domain containing 2
Tssr107614 11 46690306 to 46690320 14 - TSS region transcription start site region 107614
Tssr107615 11 46698608 to 46698623 15 - TSS region transcription start site region 107615
Tssr107616 11 46698819 to 46698835 16 - TSS region transcription start site region 107616
Tssr107617 11 46699049 to 46699075 26 - TSS region transcription start site region 107617
Tssr107618 11 46707060 to 46707077 17 - TSS region transcription start site region 107618
Tssr3476 11 46707088 to 46707091 3 - TSS region transcription start site region 3476
Tssr107619 11 46707097 to 46707112 15 - TSS region transcription start site region 107619
Tssr101120 11 46727782 to 46727792 10 + TSS region transcription start site region 101120
Gm12174 11 46727818 to 46728630 812 + pseudogene predicted gene 12174
Tssr101121 11 46739783 to 46739798 15 + TSS region transcription start site region 101121
Havcr1 11 46739822 to 46779578 39756 + protein coding gene hepatitis A virus cellular receptor 1
Tssr101122 11 46739827 to 46739840 13 + TSS region transcription start site region 101122
Tssr3477 11 46740216 to 46740227 11 + TSS region transcription start site region 3477
Tssr3478 11 46750482 to 46750491 9 + TSS region transcription start site region 3478
Tssr101123 11 46750506 to 46750543 37 + TSS region transcription start site region 101123
Tssr101124 11 46750562 to 46750577 15 + TSS region transcription start site region 101124
Tssr101125 11 46750596 to 46750605 9 + TSS region transcription start site region 101125
Tssr101126 11 46750609 to 46750617 8 + TSS region transcription start site region 101126
Tssr101127 11 46752406 to 46752414 8 + TSS region transcription start site region 101127
Gm39817 11 46798614 to 46804955 6341 - lncRNA gene predicted gene, 39817
Tssr101128 11 46810792 to 46810809 17 + TSS region transcription start site region 101128
Timd4 11 46810800 to 46844332 33532 + protein coding gene T cell immunoglobulin and mucin domain containing 4
Tssr101129 11 46815531 to 46815542 11 + TSS region transcription start site region 101129
Tssr101130 11 46815684 to 46815709 25 + TSS region transcription start site region 101130
Tssr101131 11 46815717 to 46815738 21 + TSS region transcription start site region 101131
Tssr101132 11 46817537 to 46817564 27 + TSS region transcription start site region 101132
Tssr101133 11 46817572 to 46817590 18 + TSS region transcription start site region 101133
Tssr101134 11 46821461 to 46821466 5 + TSS region transcription start site region 101134
Gm12175 11 46874413 to 46874757 344 + pseudogene predicted gene 12175
A530047J11Rik 11 46971075 to 46971869 794 unclassified non-coding RNA gene RIKEN cDNA A530047J11 gene
Sgcd 11 46971077 to 47988851 1017774 - protein coding gene sarcoglycan, delta (dystrophin-associated glycoprotein)
Tssr3479 11 47097682 to 47097691 9 + TSS region transcription start site region 3479
Tssr107620 11 47105734 to 47105737 3 - TSS region transcription start site region 107620
Tssr107621 11 47240705 to 47240718 13 - TSS region transcription start site region 107621
Tssr3480 11 47282893 to 47282895 2 + TSS region transcription start site region 3480
Tssr107622 11 47379278 to 47379297 19 - TSS region transcription start site region 107622
Tssr107623 11 47379306 to 47379344 38 - TSS region transcription start site region 107623
Tssr107624 11 47379352 to 47379368 16 - TSS region transcription start site region 107624
Tssr107625 11 47379374 to 47379395 21 - TSS region transcription start site region 107625
Tssr107626 11 47379405 to 47379414 9 - TSS region transcription start site region 107626
Gm46256 11 47422101 to 47425504 3403 + pseudogene predicted gene, 46256
D11Mit239 11 47450141 to 47450429 288 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 239
Gm12176 11 47541432 to 47542306 874 + pseudogene predicted gene 12176
D11Mit190 11 47781479 to 47781625 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 190
D11Mit191 11 47889093 to 47889238 145 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 191
Gm23039 11 47912385 to 47912545 160 - snRNA gene predicted gene, 23039
Tssr101135 11 47933917 to 47933921 4 + TSS region transcription start site region 101135
Tssr107627 11 47985152 to 47985176 24 - TSS region transcription start site region 107627
Cpgi2777 11 47988061 to 47989567 1506 CpG island CpG island 2777
Tssr3481 11 47988426 to 47988437 11 - TSS region transcription start site region 3481
Tssr107628 11 47988962 to 47988980 18 - TSS region transcription start site region 107628
Tssr107629 11 47989386 to 47989409 23 - TSS region transcription start site region 107629
Cocia18 11 48117382 to 48117382 0 QTL cocaine-induced activity, QTL 18
Gm12178 11 48289984 to 48290313 329 - pseudogene predicted gene 12178
Tssr107630 11 48349232 to 48349234 2 - TSS region transcription start site region 107630
Gm39818 11 48378300 to 48384324 6024 + lncRNA gene predicted gene, 39818
D11Mit176 11 48487712 to 48487835 123 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 176
D11Nds3 11 48487725 to 48487821 96 DNA segment DNA segment, Chr 11, Nuffield Department of Surgery 3
Gm12179 11 48551253 to 48552524 1271 - pseudogene predicted gene 12179
Gm12180 11 48568355 to 48569015 660 + pseudogene predicted gene 12180
Gm12181 11 48595279 to 48595809 530 + pseudogene predicted gene 12181
Gm24422 11 48684709 to 48684827 118 + snoRNA gene predicted gene, 24422
Tssr101136 11 48716076 to 48716081 5 + TSS region transcription start site region 101136
Gm12182 11 48734554 to 48735561 1007 - pseudogene predicted gene 12182
Gm12183 11 48751867 to 48753714 1847 - pseudogene predicted gene 12183
Tssr107631 11 48752502 to 48752505 3 - TSS region transcription start site region 107631
Tssr107632 11 48753209 to 48753222 13 - TSS region transcription start site region 107632
Tssr107633 11 48753508 to 48753537 29 - TSS region transcription start site region 107633
Tssr101137 11 48782584 to 48782588 4 + TSS region transcription start site region 101137
Gm36109 11 48792314 to 48799948 7634 - lncRNA gene predicted gene, 36109
D11Mit309 11 48793142 to 48793265 123 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 309
Tssr107634 11 48799401 to 48799405 4 - TSS region transcription start site region 107634
Cpgi2778 11 48799955 to 48800882 927 CpG island CpG island 2778
Tssr107635 11 48799958 to 48800005 47 - TSS region transcription start site region 107635
Tssr101138 11 48800041 to 48800071 30 + TSS region transcription start site region 101138
Tssr101139 11 48800357 to 48800369 12 + TSS region transcription start site region 101139
Rack1 11 48800360 to 48806241 5881 + protein coding gene receptor for activated C kinase 1
Tssr101140 11 48800391 to 48800393 2 + TSS region transcription start site region 101140
Tssr101141 11 48800864 to 48800868 4 + TSS region transcription start site region 101141
Gm25296 11 48800866 to 48800932 66 + snoRNA gene predicted gene, 25296
Tssr101142 11 48801799 to 48801809 10 + TSS region transcription start site region 101142
Snord96a 11 48802033 to 48802109 76 + snoRNA gene small nucleolar RNA, C/D box 96A
Tssr101143 11 48802266 to 48802296 30 + TSS region transcription start site region 101143
Tssr101144 11 48802309 to 48802352 43 + TSS region transcription start site region 101144
Snord95 11 48803139 to 48803206 67 + snoRNA gene small nucleolar RNA, C/D box 95
Tssr101145 11 48803422 to 48803449 27 + TSS region transcription start site region 101145
Tssr107636 11 48805583 to 48805619 36 - TSS region transcription start site region 107636
Trim41 11 48806404 to 48817353 10949 - protein coding gene tripartite motif-containing 41
Tssr3482 11 48808459 to 48808465 6 - TSS region transcription start site region 3482
Tssr107637 11 48809046 to 48809050 4 - TSS region transcription start site region 107637
Cpgi2779 11 48816298 to 48817700 1402 CpG island CpG island 2779
Tssr107638 11 48816905 to 48816928 23 - TSS region transcription start site region 107638
Tssr107639 11 48816936 to 48816961 25 - TSS region transcription start site region 107639
Tssr101146 11 48817176 to 48817184 8 + TSS region transcription start site region 101146