Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:45890903-46230912

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clint1 11 45852051 to 45910625 58574 + protein coding gene clathrin interactor 1
Tssr101078 11 45893879 to 45893890 11 + TSS region transcription start site region 101078
Tssr101079 11 45893894 to 45893909 15 + TSS region transcription start site region 101079
Tssr101080 11 45904210 to 45904222 12 + TSS region transcription start site region 101080
Lsm11 11 45928269 to 45944935 16666 - protein coding gene U7 snRNP-specific Sm-like protein LSM11
Cpgi2768 11 45943989 to 45945198 1209 CpG island CpG island 2768
Tssr107577 11 45944910 to 45944960 50 - TSS region transcription start site region 107577
Thg1l 11 45946843 to 45955494 8651 - protein coding gene tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
Cpgi2769 11 45955033 to 45955638 605 CpG island CpG island 2769
Tssr107578 11 45955164 to 45955182 18 - TSS region transcription start site region 107578
Tssr107579 11 45955183 to 45955193 10 - TSS region transcription start site region 107579
Tssr107580 11 45955426 to 45955437 11 - TSS region transcription start site region 107580
Tssr107581 11 45955465 to 45955491 26 - TSS region transcription start site region 107581
Gm35497 11 45979039 to 45979844 805 - lncRNA gene predicted gene, 35497
Tssr101081 11 45979315 to 45979322 7 + TSS region transcription start site region 101081
Cpgi2770 11 45979856 to 45981291 1435 CpG island CpG island 2770
Tssr101082 11 45980226 to 45980233 7 + TSS region transcription start site region 101082
Tssr101083 11 45980255 to 45980273 18 + TSS region transcription start site region 101083
Tssr101084 11 45980309 to 45980337 28 + TSS region transcription start site region 101084
Sox30 11 45980310 to 46017994 37684 + protein coding gene SRY (sex determining region Y)-box 30
Tssr101085 11 45980353 to 45980362 9 + TSS region transcription start site region 101085
Tssr101086 11 45981232 to 45981242 10 + TSS region transcription start site region 101086
Tssr101087 11 45991717 to 45991759 42 + TSS region transcription start site region 101087
Cpgi2771 11 45991818 to 45992014 196 CpG island CpG island 2771
Gm12165 11 46036440 to 46036781 341 + pseudogene predicted gene 12165
Gm12166 11 46051354 to 46052321 967 - protein coding gene predicted gene 12166
Cpgi2772 11 46055844 to 46056627 783 CpG island CpG island 2772
Tssr3474 11 46055947 to 46055967 20 + TSS region transcription start site region 3474
Tssr101088 11 46055973 to 46056068 95 + TSS region transcription start site region 101088
Adam19 11 46055992 to 46147343 91351 + protein coding gene a disintegrin and metallopeptidase domain 19 (meltrin beta)
Tssr101089 11 46056088 to 46056097 9 + TSS region transcription start site region 101089
Tssr101090 11 46056165 to 46056175 10 + TSS region transcription start site region 101090
Tssr101091 11 46056223 to 46056230 7 + TSS region transcription start site region 101091
Cpgi2773 11 46057062 to 46057301 239 CpG island CpG island 2773
Tssr107582 11 46058109 to 46058132 23 - TSS region transcription start site region 107582
Tssr107583 11 46058174 to 46058195 21 - TSS region transcription start site region 107583
Tssr101092 11 46060903 to 46060912 9 + TSS region transcription start site region 101092
Tssr3475 11 46083700 to 46083716 16 + TSS region transcription start site region 3475
Tssr107584 11 46083797 to 46083807 10 - TSS region transcription start site region 107584
Tssr101093 11 46086665 to 46086674 9 + TSS region transcription start site region 101093
Tssr101094 11 46086686 to 46086696 10 + TSS region transcription start site region 101094
Tssr107585 11 46087150 to 46087156 6 - TSS region transcription start site region 107585
Mir8100 11 46102270 to 46102390 120 + miRNA gene microRNA 8100
Tssr101095 11 46123112 to 46123131 19 + TSS region transcription start site region 101095
Tssr101096 11 46123616 to 46123620 4 + TSS region transcription start site region 101096
Tssr101097 11 46124997 to 46125017 20 + TSS region transcription start site region 101097
Tssr101098 11 46127265 to 46127269 4 + TSS region transcription start site region 101098
Gm16033 11 46143783 to 46147116 3333 - antisense lncRNA gene predicted gene 16033
Gm16034 11 46143897 to 46145014 1117 - antisense lncRNA gene predicted gene 16034
Nipal4 11 46148155 to 46166359 18204 - protein coding gene NIPA-like domain containing 4
Gm35624 11 46165313 to 46193869 28556 + lncRNA gene predicted gene, 35624
Cpgi2774 11 46166041 to 46166609 568 CpG island CpG island 2774
Tssr107586 11 46166328 to 46166384 56 - TSS region transcription start site region 107586
Tssr107587 11 46166397 to 46166407 10 - TSS region transcription start site region 107587
Mir7239 11 46170087 to 46170143 56 + miRNA gene microRNA 7239
Cyfip2 11 46193850 to 46312859 119009 - protein coding gene cytoplasmic FMR1 interacting protein 2
Tssr107588 11 46196030 to 46196041 11 - TSS region transcription start site region 107588
Tssr107589 11 46196051 to 46196067 16 - TSS region transcription start site region 107589
Tssr107590 11 46221400 to 46221409 9 - TSS region transcription start site region 107590
Tssr107591 11 46221425 to 46221439 14 - TSS region transcription start site region 107591
Tssr101099 11 46222583 to 46222594 11 + TSS region transcription start site region 101099
Tssr101100 11 46222602 to 46222626 24 + TSS region transcription start site region 101100
Tssr101101 11 46222631 to 46222668 37 + TSS region transcription start site region 101101
Tssr101102 11 46227138 to 46227145 7 + TSS region transcription start site region 101102