Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:45338894-46448909

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12162 11 45409042 to 45468504 59462 - lincRNA gene predicted gene 12162
Tssr107572 11 45465314 to 45465315 1 - TSS region transcription start site region 107572
D11Mit189 11 45472169 to 45472300 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 189
Gm22284 11 45639383 to 45639514 131 + snoRNA gene predicted gene, 22284
Gm39816 11 45660970 to 45752943 91973 - lncRNA gene predicted gene, 39816
Tssr101064 11 45673198 to 45673200 2 + TSS region transcription start site region 101064
Ppiq7 11 45678320 to 45678320 0 QTL prepulse inhibition QTL 7
Tssr101065 11 45703794 to 45703831 37 + TSS region transcription start site region 101065
Gm35282 11 45703805 to 45720563 16758 + lncRNA gene predicted gene, 35282
Tssr107573 11 45752943 to 45752976 33 - TSS region transcription start site region 107573
Tssr107574 11 45753609 to 45753614 5 - TSS region transcription start site region 107574
F630206G17Rik 11 45808087 to 45841171 33084 + lncRNA gene RIKEN cDNA F630206G17 gene
Gm12163 11 45813604 to 45813992 388 + pseudogene predicted gene 12163
Desp2 11 45817754 to 45817873 119 QTL despair 2
D11Mit271 11 45817754 to 45817873 119 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 271
Mastr 11 45817754 to 89927907 44110153 QTL modifier of astrocytoma
Tssr101066 11 45829106 to 45829109 3 + TSS region transcription start site region 101066
Gm12164 11 45829319 to 45829869 550 + pseudogene predicted gene 12164
Gm22751 11 45829779 to 45829887 108 + miRNA gene predicted gene, 22751
Cpgi2767 11 45851632 to 45852698 1066 CpG island CpG island 2767
Tssr101067 11 45851933 to 45851946 13 + TSS region transcription start site region 101067
Tssr101068 11 45851955 to 45851996 41 + TSS region transcription start site region 101068
Tssr101069 11 45851997 to 45852019 22 + TSS region transcription start site region 101069
Tssr101070 11 45852031 to 45852032 1 + TSS region transcription start site region 101070
Clint1 11 45852051 to 45910625 58574 + protein coding gene clathrin interactor 1
Tssr3473 11 45852604 to 45852607 3 - TSS region transcription start site region 3473
Tssr107575 11 45852616 to 45852629 13 - TSS region transcription start site region 107575
Tssr101071 11 45852834 to 45852837 3 + TSS region transcription start site region 101071
Tssr101072 11 45856240 to 45856252 12 + TSS region transcription start site region 101072
Tssr101073 11 45856349 to 45856391 42 + TSS region transcription start site region 101073
9530029O12Rik 11 45862916 to 45863654 738 unclassified gene RIKEN cDNA 9530029O12 gene
Tssr101074 11 45886423 to 45886448 25 + TSS region transcription start site region 101074
Tssr107576 11 45887508 to 45887531 23 - TSS region transcription start site region 107576
Tssr101075 11 45890594 to 45890637 43 + TSS region transcription start site region 101075
Tssr101076 11 45890647 to 45890662 15 + TSS region transcription start site region 101076
Tssr101077 11 45890692 to 45890702 10 + TSS region transcription start site region 101077
Tssr101078 11 45893879 to 45893890 11 + TSS region transcription start site region 101078
Tssr101079 11 45893894 to 45893909 15 + TSS region transcription start site region 101079
Tssr101080 11 45904210 to 45904222 12 + TSS region transcription start site region 101080
Lsm11 11 45928269 to 45944935 16666 - protein coding gene U7 snRNP-specific Sm-like protein LSM11
Cpgi2768 11 45943989 to 45945198 1209 CpG island CpG island 2768
Tssr107577 11 45944910 to 45944960 50 - TSS region transcription start site region 107577
Thg1l 11 45946843 to 45955494 8651 - protein coding gene tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)
Cpgi2769 11 45955033 to 45955638 605 CpG island CpG island 2769
Tssr107578 11 45955164 to 45955182 18 - TSS region transcription start site region 107578
Tssr107579 11 45955183 to 45955193 10 - TSS region transcription start site region 107579
Tssr107580 11 45955426 to 45955437 11 - TSS region transcription start site region 107580
Tssr107581 11 45955465 to 45955491 26 - TSS region transcription start site region 107581
Gm35497 11 45979039 to 45979844 805 - lncRNA gene predicted gene, 35497
Tssr101081 11 45979315 to 45979322 7 + TSS region transcription start site region 101081
Cpgi2770 11 45979856 to 45981291 1435 CpG island CpG island 2770
Tssr101082 11 45980226 to 45980233 7 + TSS region transcription start site region 101082
Tssr101083 11 45980255 to 45980273 18 + TSS region transcription start site region 101083
Tssr101084 11 45980309 to 45980337 28 + TSS region transcription start site region 101084
Sox30 11 45980310 to 46017994 37684 + protein coding gene SRY (sex determining region Y)-box 30
Tssr101085 11 45980353 to 45980362 9 + TSS region transcription start site region 101085
Tssr101086 11 45981232 to 45981242 10 + TSS region transcription start site region 101086
Tssr101087 11 45991717 to 45991759 42 + TSS region transcription start site region 101087
Cpgi2771 11 45991818 to 45992014 196 CpG island CpG island 2771
Gm12165 11 46036440 to 46036781 341 + pseudogene predicted gene 12165
Gm12166 11 46051354 to 46052321 967 - protein coding gene predicted gene 12166
Cpgi2772 11 46055844 to 46056627 783 CpG island CpG island 2772
Tssr3474 11 46055947 to 46055967 20 + TSS region transcription start site region 3474
Tssr101088 11 46055973 to 46056068 95 + TSS region transcription start site region 101088
Adam19 11 46055992 to 46147343 91351 + protein coding gene a disintegrin and metallopeptidase domain 19 (meltrin beta)
Tssr101089 11 46056088 to 46056097 9 + TSS region transcription start site region 101089
Tssr101090 11 46056165 to 46056175 10 + TSS region transcription start site region 101090
Tssr101091 11 46056223 to 46056230 7 + TSS region transcription start site region 101091
Cpgi2773 11 46057062 to 46057301 239 CpG island CpG island 2773
Tssr107582 11 46058109 to 46058132 23 - TSS region transcription start site region 107582
Tssr107583 11 46058174 to 46058195 21 - TSS region transcription start site region 107583
Tssr101092 11 46060903 to 46060912 9 + TSS region transcription start site region 101092
Tssr3475 11 46083700 to 46083716 16 + TSS region transcription start site region 3475
Tssr107584 11 46083797 to 46083807 10 - TSS region transcription start site region 107584
Tssr101093 11 46086665 to 46086674 9 + TSS region transcription start site region 101093
Tssr101094 11 46086686 to 46086696 10 + TSS region transcription start site region 101094
Tssr107585 11 46087150 to 46087156 6 - TSS region transcription start site region 107585
Mir8100 11 46102270 to 46102390 120 + miRNA gene microRNA 8100
Tssr101095 11 46123112 to 46123131 19 + TSS region transcription start site region 101095
Tssr101096 11 46123616 to 46123620 4 + TSS region transcription start site region 101096
Tssr101097 11 46124997 to 46125017 20 + TSS region transcription start site region 101097
Tssr101098 11 46127265 to 46127269 4 + TSS region transcription start site region 101098
Gm16033 11 46143783 to 46147116 3333 - antisense lncRNA gene predicted gene 16033
Gm16034 11 46143897 to 46145014 1117 - antisense lncRNA gene predicted gene 16034
Nipal4 11 46148155 to 46166359 18204 - protein coding gene NIPA-like domain containing 4
Gm35624 11 46165313 to 46193869 28556 + lncRNA gene predicted gene, 35624
Cpgi2774 11 46166041 to 46166609 568 CpG island CpG island 2774
Tssr107586 11 46166328 to 46166384 56 - TSS region transcription start site region 107586
Tssr107587 11 46166397 to 46166407 10 - TSS region transcription start site region 107587
Mir7239 11 46170087 to 46170143 56 + miRNA gene microRNA 7239
Cyfip2 11 46193850 to 46312859 119009 - protein coding gene cytoplasmic FMR1 interacting protein 2
Tssr107588 11 46196030 to 46196041 11 - TSS region transcription start site region 107588
Tssr107589 11 46196051 to 46196067 16 - TSS region transcription start site region 107589
Tssr107590 11 46221400 to 46221409 9 - TSS region transcription start site region 107590
Tssr107591 11 46221425 to 46221439 14 - TSS region transcription start site region 107591
Tssr101099 11 46222583 to 46222594 11 + TSS region transcription start site region 101099
Tssr101100 11 46222602 to 46222626 24 + TSS region transcription start site region 101100
Tssr101101 11 46222631 to 46222668 37 + TSS region transcription start site region 101101
Tssr101102 11 46227138 to 46227145 7 + TSS region transcription start site region 101102
Tssr101103 11 46235460 to 46235471 11 + TSS region transcription start site region 101103
Fndc9 11 46235557 to 46239871 4314 + protein coding gene fibronectin type III domain containing 9
Tssr107592 11 46237214 to 46237216 2 - TSS region transcription start site region 107592
Tssr107593 11 46238803 to 46238807 4 - TSS region transcription start site region 107593
Gm12568 11 46243571 to 46244194 623 - pseudogene predicted gene 12568
Tssr107594 11 46253999 to 46254009 10 - TSS region transcription start site region 107594
Tssr107595 11 46266025 to 46266036 11 - TSS region transcription start site region 107595
Tssr107596 11 46287008 to 46287011 3 - TSS region transcription start site region 107596
Tssr107597 11 46291535 to 46291578 43 - TSS region transcription start site region 107597
Cpgi2775 11 46311528 to 46312844 1316 CpG island CpG island 2775
Tssr107598 11 46312069 to 46312119 50 - TSS region transcription start site region 107598
Tssr107599 11 46312283 to 46312338 55 - TSS region transcription start site region 107599
Itk 11 46325150 to 46389515 64365 - protein coding gene IL2 inducible T cell kinase
Tssr107600 11 46326865 to 46326897 32 - TSS region transcription start site region 107600
Gm12167 11 46342287 to 46345020 2733 + antisense lncRNA gene predicted gene 12167
Tssr107601 11 46358030 to 46358031 1 - TSS region transcription start site region 107601
Tssr107602 11 46363822 to 46363868 46 - TSS region transcription start site region 107602
Tssr107603 11 46372403 to 46372443 40 - TSS region transcription start site region 107603
Tssr101104 11 46372886 to 46372899 13 + TSS region transcription start site region 101104
5830453J16Rik 11 46377728 to 46378580 852 unclassified gene RIKEN cDNA 5830453J16 gene
Tssr107604 11 46378330 to 46378348 18 - TSS region transcription start site region 107604
Tssr107605 11 46386608 to 46386622 14 - TSS region transcription start site region 107605
Tssr101105 11 46386740 to 46386753 13 + TSS region transcription start site region 101105
Tssr101106 11 46386820 to 46386829 9 + TSS region transcription start site region 101106
Tssr107606 11 46388549 to 46388588 39 - TSS region transcription start site region 107606
Tssr107607 11 46389425 to 46389448 23 - TSS region transcription start site region 107607
Tssr107608 11 46389454 to 46389467 13 - TSS region transcription start site region 107608
Tssr107609 11 46389471 to 46389505 34 - TSS region transcription start site region 107609
Tssr107610 11 46389509 to 46389525 16 - TSS region transcription start site region 107610
Tssr107611 11 46389586 to 46389591 5 - TSS region transcription start site region 107611
Tssr101107 11 46389720 to 46389729 9 + TSS region transcription start site region 101107
Tssr101108 11 46396548 to 46396575 27 + TSS region transcription start site region 101108
Tssr101109 11 46404720 to 46404730 10 + TSS region transcription start site region 101109
Fam71b 11 46404728 to 46407985 3257 + protein coding gene family with sequence similarity 71, member B
Cpgi2776 11 46436791 to 46437746 955 CpG island CpG island 2776
Tssr101110 11 46436930 to 46436941 11 + TSS region transcription start site region 101110
Med7 11 46436937 to 46442721 5784 + protein coding gene mediator complex subunit 7
Tssr101111 11 46436942 to 46437017 75 + TSS region transcription start site region 101111
Tssr101112 11 46437031 to 46437050 19 + TSS region transcription start site region 101112
Tssr101113 11 46437065 to 46437088 23 + TSS region transcription start site region 101113
Tssr101114 11 46437486 to 46437512 26 + TSS region transcription start site region 101114
2310031A07Rik 11 46440362 to 46447248 6886 - lincRNA gene RIKEN cDNA 2310031A07 gene
Tssr107612 11 46447259 to 46447270 11 - TSS region transcription start site region 107612