Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:44747932-45918057

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ebf1 11 44618100 to 45008096 389996 + protein coding gene early B cell factor 1
D11Mit130 11 44822544 to 44822743 199 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 130
D11Dcr8 11 44905350 to 44905446 96 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 8
Tssr101057 11 44926208 to 44926213 5 + TSS region transcription start site region 101057
Tssr107571 11 44950400 to 44950408 8 - TSS region transcription start site region 107571
Tssr101058 11 44962904 to 44962910 6 + TSS region transcription start site region 101058
Tssr101059 11 44962929 to 44962935 6 + TSS region transcription start site region 101059
Tssr101060 11 44962936 to 44962946 10 + TSS region transcription start site region 101060
Tssr101061 11 45005088 to 45005096 8 + TSS region transcription start site region 101061
Tssr101062 11 45006122 to 45006131 9 + TSS region transcription start site region 101062
Tssr101063 11 45006829 to 45006869 40 + TSS region transcription start site region 101063
Gm12159 11 45102866 to 45116928 14062 - lincRNA gene predicted gene 12159
Gm12160 11 45160943 to 45213656 52713 + lincRNA gene predicted gene 12160
Gm38087 11 45189570 to 45189872 302 - unclassified gene predicted gene, 38087
Gm37312 11 45274418 to 45296390 21972 - unclassified gene predicted gene, 37312
Nidd1n 11 45275046 to 80087498 34812452 QTL non-insulin-dependent diabetes mellitus 1 in NSY
Si5lq5 11 45275046 to 45275149 103 QTL serum IGFBP-5 level QTL 5
D11Mit236 11 45275046 to 45275149 103 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 236
D11Dcr9 11 45275057 to 45275159 102 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 9
Gm12161 11 45280594 to 45280954 360 - pseudogene predicted gene 12161
D11Mit188 11 45332932 to 45333057 125 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 188
Gm12162 11 45409042 to 45468504 59462 - lincRNA gene predicted gene 12162
Tssr107572 11 45465314 to 45465315 1 - TSS region transcription start site region 107572
D11Mit189 11 45472169 to 45472300 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 189
Gm22284 11 45639383 to 45639514 131 + snoRNA gene predicted gene, 22284
Gm39816 11 45660970 to 45752943 91973 - lncRNA gene predicted gene, 39816
Tssr101064 11 45673198 to 45673200 2 + TSS region transcription start site region 101064
Ppiq7 11 45678320 to 45678320 0 QTL prepulse inhibition QTL 7
Tssr101065 11 45703794 to 45703831 37 + TSS region transcription start site region 101065
Gm35282 11 45703805 to 45720563 16758 + lncRNA gene predicted gene, 35282
Tssr107573 11 45752943 to 45752976 33 - TSS region transcription start site region 107573
Tssr107574 11 45753609 to 45753614 5 - TSS region transcription start site region 107574
F630206G17Rik 11 45808087 to 45841171 33084 + lncRNA gene RIKEN cDNA F630206G17 gene
Gm12163 11 45813604 to 45813992 388 + pseudogene predicted gene 12163
Desp2 11 45817754 to 45817873 119 QTL despair 2
D11Mit271 11 45817754 to 45817873 119 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 271
Mastr 11 45817754 to 89927907 44110153 QTL modifier of astrocytoma
Tssr101066 11 45829106 to 45829109 3 + TSS region transcription start site region 101066
Gm12164 11 45829319 to 45829869 550 + pseudogene predicted gene 12164
Gm22751 11 45829779 to 45829887 108 + miRNA gene predicted gene, 22751
Cpgi2767 11 45851632 to 45852698 1066 CpG island CpG island 2767
Tssr101067 11 45851933 to 45851946 13 + TSS region transcription start site region 101067
Tssr101068 11 45851955 to 45851996 41 + TSS region transcription start site region 101068
Tssr101069 11 45851997 to 45852019 22 + TSS region transcription start site region 101069
Tssr101070 11 45852031 to 45852032 1 + TSS region transcription start site region 101070
Clint1 11 45852051 to 45910625 58574 + protein coding gene clathrin interactor 1
Tssr3473 11 45852604 to 45852607 3 - TSS region transcription start site region 3473
Tssr107575 11 45852616 to 45852629 13 - TSS region transcription start site region 107575
Tssr101071 11 45852834 to 45852837 3 + TSS region transcription start site region 101071
Tssr101072 11 45856240 to 45856252 12 + TSS region transcription start site region 101072
Tssr101073 11 45856349 to 45856391 42 + TSS region transcription start site region 101073
9530029O12Rik 11 45862916 to 45863654 738 unclassified gene RIKEN cDNA 9530029O12 gene
Tssr101074 11 45886423 to 45886448 25 + TSS region transcription start site region 101074
Tssr107576 11 45887508 to 45887531 23 - TSS region transcription start site region 107576
Tssr101075 11 45890594 to 45890637 43 + TSS region transcription start site region 101075
Tssr101076 11 45890647 to 45890662 15 + TSS region transcription start site region 101076
Tssr101077 11 45890692 to 45890702 10 + TSS region transcription start site region 101077
Tssr101078 11 45893879 to 45893890 11 + TSS region transcription start site region 101078
Tssr101079 11 45893894 to 45893909 15 + TSS region transcription start site region 101079
Tssr101080 11 45904210 to 45904222 12 + TSS region transcription start site region 101080