Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:4467381-5147389

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154 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mtmr3 11 4480868 to 4594862 113994 - protein coding gene myotubularin related protein 3
Tssr106553 11 4497525 to 4497532 7 - TSS region transcription start site region 106553
Tssr106554 11 4497549 to 4497554 5 - TSS region transcription start site region 106554
Tssr106555 11 4497556 to 4497585 29 - TSS region transcription start site region 106555
Tssr106556 11 4497587 to 4497592 5 - TSS region transcription start site region 106556
D11Mit72 11 4557896 to 4558058 162 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 72
Gm11960 11 4563627 to 4564612 985 + pseudogene predicted gene 11960
Tssr106557 11 4579973 to 4579989 16 - TSS region transcription start site region 106557
Tssr106558 11 4593805 to 4593809 4 - TSS region transcription start site region 106558
Cpgi2514 11 4594111 to 4595021 910 CpG island CpG island 2514
Tssr106559 11 4594750 to 4594820 70 - TSS region transcription start site region 106559
Tssr106560 11 4594825 to 4594828 3 - TSS region transcription start site region 106560
Tssr106561 11 4594857 to 4594875 18 - TSS region transcription start site region 106561
Gm11032 11 4620067 to 4621698 1631 + protein coding gene predicted gene 11032
Cpgi2515 11 4620262 to 4620506 244 CpG island CpG island 2515
Gm11961 11 4620275 to 4630011 9736 - antisense lncRNA gene predicted gene 11961
Cpgi2516 11 4637582 to 4638028 446 CpG island CpG island 2516
Tssr100128 11 4637701 to 4637711 10 + TSS region transcription start site region 100128
Tssr100129 11 4637719 to 4637726 7 + TSS region transcription start site region 100129
Tssr100130 11 4637734 to 4637789 55 + TSS region transcription start site region 100130
Ascc2 11 4637747 to 4685699 47952 + protein coding gene activating signal cointegrator 1 complex subunit 2
Uqcr10 11 4701973 to 4704342 2369 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit X
Cpgi2517 11 4703993 to 4704747 754 CpG island CpG island 2517
Tssr106562 11 4704303 to 4704330 27 - TSS region transcription start site region 106562
Tssr106563 11 4704334 to 4704351 17 - TSS region transcription start site region 106563
Tssr100131 11 4704616 to 4704631 15 + TSS region transcription start site region 100131
Tssr100132 11 4704642 to 4704702 60 + TSS region transcription start site region 100132
Zmat5 11 4704678 to 4737669 32991 + protein coding gene zinc finger, matrin type 5
Tssr100133 11 4729858 to 4729867 9 + TSS region transcription start site region 100133
Tssr100134 11 4729870 to 4729888 18 + TSS region transcription start site region 100134
Tssr100135 11 4729889 to 4729894 5 + TSS region transcription start site region 100135
Tssr100136 11 4729898 to 4729907 9 + TSS region transcription start site region 100136
Tssr100137 11 4736240 to 4736263 23 + TSS region transcription start site region 100137
Cabp7 11 4738821 to 4746778 7957 - protein coding gene calcium binding protein 7
Gm35102 11 4740521 to 4751514 10993 + lncRNA gene predicted gene, 35102
Cpgi2518 11 4745482 to 4748036 2554 CpG island CpG island 2518
Tssr106564 11 4747152 to 4747188 36 - TSS region transcription start site region 106564
Nf2 11 4765845 to 4849536 83691 - protein coding gene neurofibromin 2
D11Mcg1 11 4767852 to 4768136 284 DNA segment DNA segment, Chr 11, McGill University 1
Tssr106565 11 4789734 to 4789760 26 - TSS region transcription start site region 106565
Tssr106566 11 4789773 to 4789782 9 - TSS region transcription start site region 106566
Tssr106567 11 4789792 to 4789813 21 - TSS region transcription start site region 106567
Tssr106568 11 4789815 to 4789828 13 - TSS region transcription start site region 106568
Tssr106569 11 4789834 to 4789842 8 - TSS region transcription start site region 106569
Tssr106570 11 4804003 to 4804023 20 - TSS region transcription start site region 106570
Tssr106571 11 4807381 to 4807389 8 - TSS region transcription start site region 106571
Tssr106572 11 4808322 to 4808329 7 - TSS region transcription start site region 106572
Tssr106573 11 4808342 to 4808351 9 - TSS region transcription start site region 106573
Tssr106574 11 4808353 to 4808356 3 - TSS region transcription start site region 106574
Tssr106575 11 4808376 to 4808387 11 - TSS region transcription start site region 106575
Tssr106576 11 4816655 to 4816664 9 - TSS region transcription start site region 106576
Tssr106577 11 4833048 to 4833057 9 - TSS region transcription start site region 106577
Tssr106578 11 4833077 to 4833084 7 - TSS region transcription start site region 106578
Tssr106579 11 4833114 to 4833123 9 - TSS region transcription start site region 106579
Cpgi2519 11 4848696 to 4849869 1173 CpG island CpG island 2519
Tssr100138 11 4848750 to 4848786 36 + TSS region transcription start site region 100138
Tssr106580 11 4849101 to 4849118 17 - TSS region transcription start site region 106580
Tssr106581 11 4849323 to 4849343 20 - TSS region transcription start site region 106581
Tssr106582 11 4849345 to 4849473 128 - TSS region transcription start site region 106582
Gm17793 11 4864785 to 4865385 600 - pseudogene predicted gene, 17793
Cpgi2520 11 4873883 to 4874316 433 CpG island CpG island 2520
Nipsnap1 11 4873959 to 4894201 20242 + protein coding gene nipsnap homolog 1
Tssr100139 11 4873960 to 4874005 45 + TSS region transcription start site region 100139
Tssr100140 11 4883186 to 4883222 36 + TSS region transcription start site region 100140
Cpgi2521 11 4883563 to 4883786 223 CpG island CpG island 2521
Tssr100141 11 4887761 to 4887767 6 + TSS region transcription start site region 100141
Tssr100142 11 4891205 to 4891210 5 + TSS region transcription start site region 100142
Mir6918 11 4891345 to 4891402 57 + miRNA gene microRNA 6918
Cpgi2522 11 4895008 to 4895893 885 CpG island CpG island 2522
Tssr100143 11 4895316 to 4895327 11 + TSS region transcription start site region 100143
Thoc5 11 4895320 to 4928867 33547 + protein coding gene THO complex 5
Tssr100144 11 4895328 to 4895354 26 + TSS region transcription start site region 100144
Tssr100145 11 4902242 to 4902247 5 + TSS region transcription start site region 100145
Tssr100146 11 4902279 to 4902291 12 + TSS region transcription start site region 100146
AA413626 11 4918516 to 4918918 402 + pseudogene expressed sequence AA413626
Gm35321 11 4934377 to 4943237 8860 + lncRNA gene predicted gene, 35321
Nefh 11 4938754 to 4948064 9310 - protein coding gene neurofilament, heavy polypeptide
Tssr106583 11 4939535 to 4939546 11 - TSS region transcription start site region 106583
Tssr106584 11 4939621 to 4939632 11 - TSS region transcription start site region 106584
Tssr106585 11 4939680 to 4939694 14 - TSS region transcription start site region 106585
Tssr106586 11 4939709 to 4939724 15 - TSS region transcription start site region 106586
Tssr106587 11 4939809 to 4939818 9 - TSS region transcription start site region 106587
Tssr106588 11 4939933 to 4939941 8 - TSS region transcription start site region 106588
Tssr106589 11 4940041 to 4940050 9 - TSS region transcription start site region 106589
Tssr100147 11 4941150 to 4941166 16 + TSS region transcription start site region 100147
Tssr100148 11 4941272 to 4941285 13 + TSS region transcription start site region 100148
Tssr106590 11 4941394 to 4941405 11 - TSS region transcription start site region 106590
Tssr106591 11 4943923 to 4943934 11 - TSS region transcription start site region 106591
Gm39571 11 4943939 to 4944527 588 + lncRNA gene predicted gene, 39571
Cpgi2523 11 4946656 to 4948492 1836 CpG island CpG island 2523
Tssr106592 11 4947105 to 4947134 29 - TSS region transcription start site region 106592
Tssr100149 11 4947356 to 4947391 35 + TSS region transcription start site region 100149
Tssr100150 11 4947473 to 4947511 38 + TSS region transcription start site region 100150
Tssr106593 11 4947991 to 4948009 18 - TSS region transcription start site region 106593
Cpgi2524 11 4949275 to 4949567 292 CpG island CpG island 2524
Tssr106594 11 4984795 to 4984802 7 - TSS region transcription start site region 106594
Cpgi2525 11 4986721 to 4987660 939 CpG island CpG island 2525
Tssr106595 11 4986735 to 4986747 12 - TSS region transcription start site region 106595
Ap1b1 11 4986824 to 5042791 55967 + protein coding gene adaptor protein complex AP-1, beta 1 subunit
Tssr100151 11 4986883 to 4986894 11 + TSS region transcription start site region 100151
Tssr100152 11 4986898 to 4986949 51 + TSS region transcription start site region 100152
Tssr100153 11 4986950 to 4986964 14 + TSS region transcription start site region 100153
Tssr106596 11 4992566 to 4992597 31 - TSS region transcription start site region 106596
Tssr100154 11 5009464 to 5009483 19 + TSS region transcription start site region 100154
Tssr100155 11 5009494 to 5009506 12 + TSS region transcription start site region 100155
Tssr100156 11 5009515 to 5009526 11 + TSS region transcription start site region 100156
Tssr100157 11 5012569 to 5012580 11 + TSS region transcription start site region 100157
Tssr100158 11 5012582 to 5012608 26 + TSS region transcription start site region 100158
Tssr100159 11 5012634 to 5012647 13 + TSS region transcription start site region 100159
Tssr100160 11 5012675 to 5012705 30 + TSS region transcription start site region 100160
Gm47296 11 5038204 to 5038307 103 + miRNA gene predicted gene, 47296
Gm24958 11 5038211 to 5038307 96 + snoRNA gene predicted gene, 24958
Tssr100161 11 5039152 to 5039164 12 + TSS region transcription start site region 100161
Gas2l1 11 5054132 to 5065327 11195 - protein coding gene growth arrest-specific 2 like 1
Cpgi2526 11 5057660 to 5058669 1009 CpG island CpG island 2526
Tssr100162 11 5058021 to 5058045 24 + TSS region transcription start site region 100162
Tssr100163 11 5058111 to 5058147 36 + TSS region transcription start site region 100163
Rasl10a 11 5058128 to 5060384 2256 + protein coding gene RAS-like, family 10, member A
Cpgi2527 11 5059489 to 5060149 660 CpG island CpG island 2527
Cpgi2528 11 5061126 to 5062481 1355 CpG island CpG island 2528
Tssr106597 11 5061780 to 5061804 24 - TSS region transcription start site region 106597
Tssr3417 11 5061969 to 5061976 7 - TSS region transcription start site region 3417
Tssr106598 11 5061993 to 5062034 41 - TSS region transcription start site region 106598
Tssr106599 11 5063852 to 5063885 33 - TSS region transcription start site region 106599
Cpgi2529 11 5063944 to 5065672 1728 CpG island CpG island 2529
Tssr106600 11 5065276 to 5065329 53 - TSS region transcription start site region 106600
Ewsr1 11 5069687 to 5099099 29412 - protein coding gene Ewing sarcoma breakpoint region 1
Tssr106601 11 5074878 to 5074882 4 - TSS region transcription start site region 106601
Tssr106602 11 5079794 to 5079800 6 - TSS region transcription start site region 106602
Cpgi2530 11 5098233 to 5100126 1893 CpG island CpG island 2530
Tssr106603 11 5098750 to 5098759 9 - TSS region transcription start site region 106603
Tssr100164 11 5098915 to 5098926 11 + TSS region transcription start site region 100164
Tssr106604 11 5099036 to 5099050 14 - TSS region transcription start site region 106604
Tssr106605 11 5099053 to 5099081 28 - TSS region transcription start site region 106605
Tssr106606 11 5099084 to 5099095 11 - TSS region transcription start site region 106606
Rhbdd3 11 5099187 to 5106100 6913 + protein coding gene rhomboid domain containing 3
Tssr106607 11 5099223 to 5099242 19 - TSS region transcription start site region 106607
Tssr100165 11 5099266 to 5099279 13 + TSS region transcription start site region 100165
Tssr106608 11 5099323 to 5099356 33 - TSS region transcription start site region 106608
Tssr100166 11 5099406 to 5099518 112 + TSS region transcription start site region 100166
Tssr100167 11 5099626 to 5099646 20 + TSS region transcription start site region 100167
Tssr100168 11 5099659 to 5099677 18 + TSS region transcription start site region 100168
Gm46267 11 5099967 to 5101417 1450 - lncRNA gene predicted gene, 46267
Tssr100169 11 5105177 to 5105187 10 + TSS region transcription start site region 100169
Tssr100170 11 5105214 to 5105221 7 + TSS region transcription start site region 100170
Emid1 11 5106265 to 5152257 45992 - protein coding gene EMI domain containing 1
Tssr106609 11 5110117 to 5110122 5 - TSS region transcription start site region 106609
Gm46266 11 5112392 to 5131907 19515 + lncRNA gene predicted gene, 46266
Tssr106610 11 5129220 to 5129260 40 - TSS region transcription start site region 106610
Gm39572 11 5136186 to 5137082 896 + lncRNA gene predicted gene, 39572
Tssr100171 11 5136238 to 5136254 16 + TSS region transcription start site region 100171
Tssr100172 11 5136258 to 5136283 25 + TSS region transcription start site region 100172
Tssr100173 11 5146570 to 5146618 48 + TSS region transcription start site region 100173
Eae44a 11 21429532 to 4557896 -16871636 QTL experimental allergic encephalomyelitis susceptibility 44a