Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:44419457-44619478

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42073 11 44435173 to 44452492 17319 - lncRNA gene predicted gene, 42073
Ublcp1 11 44454571 to 44470498 15927 - protein coding gene ubiquitin-like domain containing CTD phosphatase 1
Gm22121 11 44469013 to 44469066 53 + miRNA gene predicted gene, 22121
Cpgi2757 11 44469791 to 44470996 1205 CpG island CpG island 2757
Tssr101018 11 44469910 to 44469926 16 + TSS region transcription start site region 101018
Tssr107566 11 44470442 to 44470459 17 - TSS region transcription start site region 107566
Tssr107567 11 44470464 to 44470513 49 - TSS region transcription start site region 107567
Tssr101019 11 44470579 to 44470606 27 + TSS region transcription start site region 101019
Gm12156 11 44479824 to 44480562 738 + pseudogene predicted gene 12156
Tssr107568 11 44496293 to 44496311 18 - TSS region transcription start site region 107568
Gm46258 11 44509114 to 44511443 2329 + lncRNA gene predicted gene, 46258
Cpgi2758 11 44518474 to 44519861 1387 CpG island CpG island 2758
Tssr101020 11 44518517 to 44518536 19 + TSS region transcription start site region 101020
Tssr101021 11 44518953 to 44518958 5 + TSS region transcription start site region 101021
Tssr101022 11 44518959 to 44519000 41 + TSS region transcription start site region 101022
Rnf145 11 44518964 to 44565520 46556 + protein coding gene ring finger protein 145
Tssr101023 11 44519405 to 44519450 45 + TSS region transcription start site region 101023
Tssr101024 11 44519457 to 44519478 21 + TSS region transcription start site region 101024
Cpgi2759 11 44519932 to 44520300 368 CpG island CpG island 2759
Tssr101025 11 44520334 to 44520343 9 + TSS region transcription start site region 101025
Tssr101026 11 44520402 to 44520440 38 + TSS region transcription start site region 101026
Tssr101027 11 44538054 to 44538058 4 + TSS region transcription start site region 101027
Tssr107569 11 44574795 to 44574799 4 - TSS region transcription start site region 107569
Tssr101028 11 44575214 to 44575218 4 + TSS region transcription start site region 101028
4930597A21Rik 11 44586317 to 44591229 4912 + lincRNA gene RIKEN cDNA 4930597A21 gene
Gm39815 11 44591357 to 44596190 4833 - lncRNA gene predicted gene, 39815
Gm37695 11 44610837 to 44617016 6179 - unclassified gene predicted gene, 37695
Cpgi2760 11 44611002 to 44611863 861 CpG island CpG island 2760
Cpgi2761 11 44612910 to 44613567 657 CpG island CpG island 2761
Cpgi2762 11 44616708 to 44617303 595 CpG island CpG island 2762
Tssr101029 11 44617286 to 44617302 16 + TSS region transcription start site region 101029
Tssr101030 11 44617310 to 44617336 26 + TSS region transcription start site region 101030
Tssr101031 11 44617354 to 44617361 7 + TSS region transcription start site region 101031
Tssr101032 11 44617375 to 44617397 22 + TSS region transcription start site region 101032
Tssr101033 11 44617487 to 44617513 26 + TSS region transcription start site region 101033
Tssr101034 11 44617514 to 44617543 29 + TSS region transcription start site region 101034
Tssr101035 11 44617551 to 44617558 7 + TSS region transcription start site region 101035
Tssr101036 11 44617613 to 44617630 17 + TSS region transcription start site region 101036
Tssr101037 11 44617647 to 44617660 13 + TSS region transcription start site region 101037
Tssr101038 11 44617689 to 44617703 14 + TSS region transcription start site region 101038
Tssr101039 11 44617867 to 44617887 20 + TSS region transcription start site region 101039
Tssr101040 11 44617928 to 44617935 7 + TSS region transcription start site region 101040
Tssr107570 11 44618065 to 44618069 4 - TSS region transcription start site region 107570
Ebf1 11 44618100 to 45008096 389996 + protein coding gene early B cell factor 1
Tssr101041 11 44618124 to 44618135 11 + TSS region transcription start site region 101041
Cpgi2763 11 44618145 to 44618629 484 CpG island CpG island 2763
Tssr101042 11 44618185 to 44618204 19 + TSS region transcription start site region 101042
Tssr101043 11 44618208 to 44618223 15 + TSS region transcription start site region 101043
Tssr101044 11 44618578 to 44618591 13 + TSS region transcription start site region 101044