Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:43742115-45032274

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa7 11 26061780 to 44373868 18312088 QTL B.burgdorferi-associated arthritis 7
Zolw1 11 35687789 to 44175104 8487315 QTL zolpidem withdrawal 1
Pbw3 11 35687789 to 44175104 8487315 QTL pentobarbital withdrawal QTL 3
Alcw9 11 35687789 to 44175104 8487315 QTL alcohol withdrawal 9
Ttc1 11 43730006 to 43747973 17967 - protein coding gene tetratricopeptide repeat domain 1
Cpgi2752 11 43747608 to 43748154 546 CpG island CpG island 2752
Tssr107559 11 43747963 to 43748015 52 - TSS region transcription start site region 107559
Cpgi2753 11 43766933 to 43767216 283 CpG island CpG island 2753
Adra1b 11 43774606 to 43901210 126604 - protein coding gene adrenergic receptor, alpha 1b
Cpgi2754 11 43775759 to 43776524 765 CpG island CpG island 2754
Cpgi2755 11 43835478 to 43836803 1325 CpG island CpG island 2755
Tssr107560 11 43835978 to 43836005 27 - TSS region transcription start site region 107560
Tssr107561 11 43836243 to 43836311 68 - TSS region transcription start site region 107561
Tssr107562 11 43836451 to 43836460 9 - TSS region transcription start site region 107562
Tssr107563 11 43836469 to 43836517 48 - TSS region transcription start site region 107563
Tssr101011 11 43838943 to 43838944 1 + TSS region transcription start site region 101011
Tssr107564 11 43901187 to 43901242 55 - TSS region transcription start site region 107564
Gm12153 11 43959089 to 44134987 175898 + lincRNA gene predicted gene 12153
Tssr101012 11 44014053 to 44014064 11 + TSS region transcription start site region 101012
D11Mit21 11 44174948 to 44175104 156 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 21
Tssr101013 11 44215586 to 44215602 16 + TSS region transcription start site region 101013
Tssr101014 11 44215623 to 44215653 30 + TSS region transcription start site region 101014
Tssr107565 11 44260505 to 44260524 19 - TSS region transcription start site region 107565
Gm12154 11 44265563 to 44267209 1646 - lincRNA gene predicted gene 12154
D11Mit235 11 44373689 to 44373868 179 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 235
D11Mit237 11 44373721 to 44373868 147 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 237
Gm12155 11 44387115 to 44387274 159 - pseudogene predicted gene 12155
Cpgi2756 11 44398967 to 44399255 288 CpG island CpG island 2756
Tssr101015 11 44399980 to 44399989 9 + TSS region transcription start site region 101015
Tssr101016 11 44400060 to 44400066 6 + TSS region transcription start site region 101016
Il12b 11 44400063 to 44414033 13970 + protein coding gene interleukin 12b
Tssr101017 11 44414100 to 44414112 12 + TSS region transcription start site region 101017
Gm42073 11 44435173 to 44452492 17319 - lncRNA gene predicted gene, 42073
Ublcp1 11 44454571 to 44470498 15927 - protein coding gene ubiquitin-like domain containing CTD phosphatase 1
Gm22121 11 44469013 to 44469066 53 + miRNA gene predicted gene, 22121
Cpgi2757 11 44469791 to 44470996 1205 CpG island CpG island 2757
Tssr101018 11 44469910 to 44469926 16 + TSS region transcription start site region 101018
Tssr107566 11 44470442 to 44470459 17 - TSS region transcription start site region 107566
Tssr107567 11 44470464 to 44470513 49 - TSS region transcription start site region 107567
Tssr101019 11 44470579 to 44470606 27 + TSS region transcription start site region 101019
Gm12156 11 44479824 to 44480562 738 + pseudogene predicted gene 12156
Tssr107568 11 44496293 to 44496311 18 - TSS region transcription start site region 107568
Gm46258 11 44509114 to 44511443 2329 + lncRNA gene predicted gene, 46258
Cpgi2758 11 44518474 to 44519861 1387 CpG island CpG island 2758
Tssr101020 11 44518517 to 44518536 19 + TSS region transcription start site region 101020
Tssr101021 11 44518953 to 44518958 5 + TSS region transcription start site region 101021
Tssr101022 11 44518959 to 44519000 41 + TSS region transcription start site region 101022
Rnf145 11 44518964 to 44565520 46556 + protein coding gene ring finger protein 145
Tssr101023 11 44519405 to 44519450 45 + TSS region transcription start site region 101023
Tssr101024 11 44519457 to 44519478 21 + TSS region transcription start site region 101024
Cpgi2759 11 44519932 to 44520300 368 CpG island CpG island 2759
Tssr101025 11 44520334 to 44520343 9 + TSS region transcription start site region 101025
Tssr101026 11 44520402 to 44520440 38 + TSS region transcription start site region 101026
Tssr101027 11 44538054 to 44538058 4 + TSS region transcription start site region 101027
Tssr107569 11 44574795 to 44574799 4 - TSS region transcription start site region 107569
Tssr101028 11 44575214 to 44575218 4 + TSS region transcription start site region 101028
4930597A21Rik 11 44586317 to 44591229 4912 + lincRNA gene RIKEN cDNA 4930597A21 gene
Gm39815 11 44591357 to 44596190 4833 - lncRNA gene predicted gene, 39815
Gm37695 11 44610837 to 44617016 6179 - unclassified gene predicted gene, 37695
Cpgi2760 11 44611002 to 44611863 861 CpG island CpG island 2760
Cpgi2761 11 44612910 to 44613567 657 CpG island CpG island 2761
Cpgi2762 11 44616708 to 44617303 595 CpG island CpG island 2762
Tssr101029 11 44617286 to 44617302 16 + TSS region transcription start site region 101029
Tssr101030 11 44617310 to 44617336 26 + TSS region transcription start site region 101030
Tssr101031 11 44617354 to 44617361 7 + TSS region transcription start site region 101031
Tssr101032 11 44617375 to 44617397 22 + TSS region transcription start site region 101032
Tssr101033 11 44617487 to 44617513 26 + TSS region transcription start site region 101033
Tssr101034 11 44617514 to 44617543 29 + TSS region transcription start site region 101034
Tssr101035 11 44617551 to 44617558 7 + TSS region transcription start site region 101035
Tssr101036 11 44617613 to 44617630 17 + TSS region transcription start site region 101036
Tssr101037 11 44617647 to 44617660 13 + TSS region transcription start site region 101037
Tssr101038 11 44617689 to 44617703 14 + TSS region transcription start site region 101038
Tssr101039 11 44617867 to 44617887 20 + TSS region transcription start site region 101039
Tssr101040 11 44617928 to 44617935 7 + TSS region transcription start site region 101040
Tssr107570 11 44618065 to 44618069 4 - TSS region transcription start site region 107570
Ebf1 11 44618100 to 45008096 389996 + protein coding gene early B cell factor 1
Tssr101041 11 44618124 to 44618135 11 + TSS region transcription start site region 101041
Cpgi2763 11 44618145 to 44618629 484 CpG island CpG island 2763
Tssr101042 11 44618185 to 44618204 19 + TSS region transcription start site region 101042
Tssr101043 11 44618208 to 44618223 15 + TSS region transcription start site region 101043
Tssr101044 11 44618578 to 44618591 13 + TSS region transcription start site region 101044
D11Mit175 11 44619481 to 44619592 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 175
Cpgi2764 11 44619772 to 44620557 785 CpG island CpG island 2764
Tssr3469 11 44620817 to 44620838 21 + TSS region transcription start site region 3469
Tssr101045 11 44621150 to 44621181 31 + TSS region transcription start site region 101045
Tssr101046 11 44621182 to 44621192 10 + TSS region transcription start site region 101046
Tssr101047 11 44621196 to 44621205 9 + TSS region transcription start site region 101047
Tssr101048 11 44621211 to 44621227 16 + TSS region transcription start site region 101048
Tssr3470 11 44621610 to 44621614 4 + TSS region transcription start site region 3470
Tssr101049 11 44643119 to 44643132 13 + TSS region transcription start site region 101049
Tssr101050 11 44643146 to 44643154 8 + TSS region transcription start site region 101050
D11Mit206 11 44646325 to 44646467 142 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 206
Tssr101051 11 44650044 to 44650090 46 + TSS region transcription start site region 101051
Tssr101052 11 44658909 to 44658924 15 + TSS region transcription start site region 101052
Tssr3471 11 44658985 to 44659001 16 + TSS region transcription start site region 3471
Gm12158 11 44659522 to 44662676 3154 - antisense lncRNA gene predicted gene 12158
Cpgi2765 11 44665217 to 44665501 284 CpG island CpG island 2765
Tssr101053 11 44667558 to 44667560 2 + TSS region transcription start site region 101053
Tssr101054 11 44675665 to 44675672 7 + TSS region transcription start site region 101054
Tssr101055 11 44682439 to 44682442 3 + TSS region transcription start site region 101055
Tssr101056 11 44699026 to 44699029 3 + TSS region transcription start site region 101056
9530018D06Rik 11 44725925 to 44727383 1458 unclassified gene RIKEN cDNA 9530018D06 gene
Tssr3472 11 44735311 to 44735325 14 + TSS region transcription start site region 3472
9630023C09Rik 11 44736044 to 44742253 6209 unclassified gene RIKEN cDNA 9630023C09 gene
D11Mit20.1 11 44739059 to 44739219 160 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 20.1
D11Mit20 11 44739211 to 44739324 113 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 20
Ctrq3 11 44739211 to 76963931 32224720 QTL C. trachomatis resistance QTL 3
Cpgi2766 11 44741055 to 44741247 192 CpG island CpG island 2766
D11Mit270 11 44743447 to 44743571 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 270
D11Mit130 11 44822544 to 44822743 199 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 130
D11Dcr8 11 44905350 to 44905446 96 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 8
Tssr101057 11 44926208 to 44926213 5 + TSS region transcription start site region 101057
Tssr107571 11 44950400 to 44950408 8 - TSS region transcription start site region 107571
Tssr101058 11 44962904 to 44962910 6 + TSS region transcription start site region 101058
Tssr101059 11 44962929 to 44962935 6 + TSS region transcription start site region 101059
Tssr101060 11 44962936 to 44962946 10 + TSS region transcription start site region 101060
Tssr101061 11 45005088 to 45005096 8 + TSS region transcription start site region 101061
Tssr101062 11 45006122 to 45006131 9 + TSS region transcription start site region 101062
Tssr101063 11 45006829 to 45006869 40 + TSS region transcription start site region 101063
Inf1 11 113167183 to 44739211 -68427972 QTL acute ozone induced inflammation