Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:43453943-44223944

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alcw9 11 35687789 to 44175104 8487315 QTL alcohol withdrawal 9
Zolw1 11 35687789 to 44175104 8487315 QTL zolpidem withdrawal 1
Pbw3 11 35687789 to 44175104 8487315 QTL pentobarbital withdrawal QTL 3
Gm12151 11 43463196 to 43463485 289 - pseudogene predicted gene 12151
Cpgi2747 11 43463241 to 43463602 361 CpG island CpG island 2747
Cpgi2748 11 43474013 to 43474470 457 CpG island CpG island 2748
Tssr100996 11 43474257 to 43474267 10 + TSS region transcription start site region 100996
Tssr100997 11 43474281 to 43474340 59 + TSS region transcription start site region 100997
C1qtnf2 11 43474306 to 43491525 17219 + protein coding gene C1q and tumor necrosis factor related protein 2
Cpgi2749 11 43490864 to 43491314 450 CpG island CpG island 2749
Cpgi2750 11 43528254 to 43529590 1336 CpG island CpG island 2750
Tssr100998 11 43528759 to 43528796 37 + TSS region transcription start site region 100998
Ccnjl 11 43528784 to 43586997 58213 + protein coding gene cyclin J-like
Tssr100999 11 43528805 to 43528820 15 + TSS region transcription start site region 100999
Gm12150 11 43579602 to 43581116 1514 - antisense lncRNA gene predicted gene 12150
4933415A04Rik 11 43587040 to 43589048 2008 + unclassified gene RIKEN cDNA 4933415A04 gene
Tssr101000 11 43587068 to 43587072 4 + TSS region transcription start site region 101000
Tssr101001 11 43594544 to 43594569 25 + TSS region transcription start site region 101001
Fabp6 11 43596049 to 43601540 5491 - protein coding gene fatty acid binding protein 6
Tssr101002 11 43596078 to 43596089 11 + TSS region transcription start site region 101002
Tssr101003 11 43598569 to 43598591 22 + TSS region transcription start site region 101003
Tssr107554 11 43598637 to 43598647 10 - TSS region transcription start site region 107554
Tssr101004 11 43598668 to 43598689 21 + TSS region transcription start site region 101004
Tssr107555 11 43598670 to 43598675 5 - TSS region transcription start site region 107555
Tssr107556 11 43598713 to 43598717 4 - TSS region transcription start site region 107556
Tssr107557 11 43601551 to 43601567 16 - TSS region transcription start site region 107557
Gm12149 11 43615117 to 43616329 1212 - pseudogene predicted gene 12149
Tssr101005 11 43632804 to 43632819 15 + TSS region transcription start site region 101005
Tssr101006 11 43632829 to 43632851 22 + TSS region transcription start site region 101006
Gm12152 11 43670801 to 43671484 683 + pseudogene predicted gene 12152
Gm34963 11 43675739 to 43681991 6252 - lncRNA gene predicted gene, 34963
Cpgi2751 11 43681633 to 43683022 1389 CpG island CpG island 2751
Pwwp2a 11 43681998 to 43721491 39493 + protein coding gene PWWP domain containing 2A
Tssr101007 11 43682011 to 43682036 25 + TSS region transcription start site region 101007
Tssr101008 11 43682038 to 43682060 22 + TSS region transcription start site region 101008
Tssr101009 11 43682066 to 43682089 23 + TSS region transcription start site region 101009
Tssr107558 11 43682656 to 43682687 31 - TSS region transcription start site region 107558
Tssr101010 11 43697820 to 43697824 4 + TSS region transcription start site region 101010
Ttc1 11 43730006 to 43747973 17967 - protein coding gene tetratricopeptide repeat domain 1
Cpgi2752 11 43747608 to 43748154 546 CpG island CpG island 2752
Tssr107559 11 43747963 to 43748015 52 - TSS region transcription start site region 107559
Cpgi2753 11 43766933 to 43767216 283 CpG island CpG island 2753
Adra1b 11 43774606 to 43901210 126604 - protein coding gene adrenergic receptor, alpha 1b
Cpgi2754 11 43775759 to 43776524 765 CpG island CpG island 2754
Cpgi2755 11 43835478 to 43836803 1325 CpG island CpG island 2755
Tssr107560 11 43835978 to 43836005 27 - TSS region transcription start site region 107560
Tssr107561 11 43836243 to 43836311 68 - TSS region transcription start site region 107561
Tssr107562 11 43836451 to 43836460 9 - TSS region transcription start site region 107562
Tssr107563 11 43836469 to 43836517 48 - TSS region transcription start site region 107563
Tssr101011 11 43838943 to 43838944 1 + TSS region transcription start site region 101011
Tssr107564 11 43901187 to 43901242 55 - TSS region transcription start site region 107564
Gm12153 11 43959089 to 44134987 175898 + lincRNA gene predicted gene 12153
Tssr101012 11 44014053 to 44014064 11 + TSS region transcription start site region 101012
D11Mit21 11 44174948 to 44175104 156 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 21
Tssr101013 11 44215586 to 44215602 16 + TSS region transcription start site region 101013
Tssr101014 11 44215623 to 44215653 30 + TSS region transcription start site region 101014