Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:43036243-44636311

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175 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa7 11 26061780 to 44373868 18312088 QTL B.burgdorferi-associated arthritis 7
Alcw9 11 35687789 to 44175104 8487315 QTL alcohol withdrawal 9
Zolw1 11 35687789 to 44175104 8487315 QTL zolpidem withdrawal 1
Pbw3 11 35687789 to 44175104 8487315 QTL pentobarbital withdrawal QTL 3
Gm9972 11 43035746 to 43037278 1532 + protein coding gene predicted gene 9972
Tssr100988 11 43068412 to 43068418 6 + TSS region transcription start site region 100988
Gm12145 11 43106140 to 43116294 10154 - lincRNA gene predicted gene 12145
Atp10b 11 43149877 to 43262285 112408 + protein coding gene ATPase, class V, type 10B
D11Mit1001 11 43153557 to 43153667 110 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1001
Tssr100989 11 43155648 to 43155704 56 + TSS region transcription start site region 100989
Tssr100990 11 43155706 to 43155718 12 + TSS region transcription start site region 100990
Tssr100991 11 43155781 to 43155784 3 + TSS region transcription start site region 100991
Tssr107526 11 43157805 to 43157822 17 - TSS region transcription start site region 107526
Gm12146 11 43197522 to 43222142 24620 - antisense lncRNA gene predicted gene 12146
D11Mit234 11 43199453 to 43199568 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 234
Gm12144 11 43229563 to 43232264 2701 - antisense lncRNA gene predicted gene 12144
Tssr107527 11 43232262 to 43232279 17 - TSS region transcription start site region 107527
Gm12147 11 43259791 to 43311088 51297 - antisense lncRNA gene predicted gene 12147
Tssr107528 11 43311059 to 43311070 11 - TSS region transcription start site region 107528
Tssr107529 11 43311110 to 43311111 1 - TSS region transcription start site region 107529
Tssr107530 11 43311135 to 43311145 10 - TSS region transcription start site region 107530
Tssr107531 11 43374393 to 43374399 6 - TSS region transcription start site region 107531
Mir146 11 43374397 to 43374461 64 - miRNA gene microRNA 146
Tssr107532 11 43375957 to 43375982 25 - TSS region transcription start site region 107532
Tssr107533 11 43379066 to 43379086 20 - TSS region transcription start site region 107533
Tssr107534 11 43379108 to 43379127 19 - TSS region transcription start site region 107534
Tssr107535 11 43379150 to 43379186 36 - TSS region transcription start site region 107535
Tssr107536 11 43379196 to 43379214 18 - TSS region transcription start site region 107536
Tssr107537 11 43379241 to 43379294 53 - TSS region transcription start site region 107537
Tssr107538 11 43379297 to 43379322 25 - TSS region transcription start site region 107538
Tssr107539 11 43379369 to 43379379 10 - TSS region transcription start site region 107539
Tssr107540 11 43379382 to 43379393 11 - TSS region transcription start site region 107540
Tssr107541 11 43379396 to 43379407 11 - TSS region transcription start site region 107541
Tssr107542 11 43379430 to 43379448 18 - TSS region transcription start site region 107542
Tssr107543 11 43379451 to 43379467 16 - TSS region transcription start site region 107543
Tssr107544 11 43380167 to 43380210 43 - TSS region transcription start site region 107544
Tssr107545 11 43381335 to 43381357 22 - TSS region transcription start site region 107545
Tssr107546 11 43383452 to 43383466 14 - TSS region transcription start site region 107546
Tssr107547 11 43385000 to 43385013 13 - TSS region transcription start site region 107547
Tssr107548 11 43385110 to 43385135 25 - TSS region transcription start site region 107548
Tssr107549 11 43385141 to 43385158 17 - TSS region transcription start site region 107549
Tssr107550 11 43385172 to 43385186 14 - TSS region transcription start site region 107550
Gm12148 11 43385482 to 43387183 1701 + lincRNA gene predicted gene 12148
Gm5782 11 43414614 to 43418967 4353 - unclassified gene predicted gene 5782
Pttg1 11 43420248 to 43426248 6000 - protein coding gene pituitary tumor-transforming gene 1
Tssr107551 11 43424830 to 43424856 26 - TSS region transcription start site region 107551
Tssr107552 11 43425687 to 43425695 8 - TSS region transcription start site region 107552
Cpgi2745 11 43425943 to 43426346 403 CpG island CpG island 2745
Tssr107553 11 43426192 to 43426258 66 - TSS region transcription start site region 107553
Cpgi2746 11 43433679 to 43434133 454 CpG island CpG island 2746
Tssr100992 11 43433720 to 43433783 63 + TSS region transcription start site region 100992
Slu7 11 43433744 to 43447981 14237 + protein coding gene SLU7 splicing factor homolog (S. cerevisiae)
Tssr100993 11 43441406 to 43441420 14 + TSS region transcription start site region 100993
Tssr100994 11 43444751 to 43444770 19 + TSS region transcription start site region 100994
Tssr100995 11 43445178 to 43445212 34 + TSS region transcription start site region 100995
Gm12151 11 43463196 to 43463485 289 - pseudogene predicted gene 12151
Cpgi2747 11 43463241 to 43463602 361 CpG island CpG island 2747
Cpgi2748 11 43474013 to 43474470 457 CpG island CpG island 2748
Tssr100996 11 43474257 to 43474267 10 + TSS region transcription start site region 100996
Tssr100997 11 43474281 to 43474340 59 + TSS region transcription start site region 100997
C1qtnf2 11 43474306 to 43491525 17219 + protein coding gene C1q and tumor necrosis factor related protein 2
Cpgi2749 11 43490864 to 43491314 450 CpG island CpG island 2749
Cpgi2750 11 43528254 to 43529590 1336 CpG island CpG island 2750
Tssr100998 11 43528759 to 43528796 37 + TSS region transcription start site region 100998
Ccnjl 11 43528784 to 43586997 58213 + protein coding gene cyclin J-like
Tssr100999 11 43528805 to 43528820 15 + TSS region transcription start site region 100999
Gm12150 11 43579602 to 43581116 1514 - antisense lncRNA gene predicted gene 12150
4933415A04Rik 11 43587040 to 43589048 2008 + unclassified gene RIKEN cDNA 4933415A04 gene
Tssr101000 11 43587068 to 43587072 4 + TSS region transcription start site region 101000
Tssr101001 11 43594544 to 43594569 25 + TSS region transcription start site region 101001
Fabp6 11 43596049 to 43601540 5491 - protein coding gene fatty acid binding protein 6
Tssr101002 11 43596078 to 43596089 11 + TSS region transcription start site region 101002
Tssr101003 11 43598569 to 43598591 22 + TSS region transcription start site region 101003
Tssr107554 11 43598637 to 43598647 10 - TSS region transcription start site region 107554
Tssr101004 11 43598668 to 43598689 21 + TSS region transcription start site region 101004
Tssr107555 11 43598670 to 43598675 5 - TSS region transcription start site region 107555
Tssr107556 11 43598713 to 43598717 4 - TSS region transcription start site region 107556
Tssr107557 11 43601551 to 43601567 16 - TSS region transcription start site region 107557
Gm12149 11 43615117 to 43616329 1212 - pseudogene predicted gene 12149
Tssr101005 11 43632804 to 43632819 15 + TSS region transcription start site region 101005
Tssr101006 11 43632829 to 43632851 22 + TSS region transcription start site region 101006
Gm12152 11 43670801 to 43671484 683 + pseudogene predicted gene 12152
Gm34963 11 43675739 to 43681991 6252 - lncRNA gene predicted gene, 34963
Cpgi2751 11 43681633 to 43683022 1389 CpG island CpG island 2751
Pwwp2a 11 43681998 to 43721491 39493 + protein coding gene PWWP domain containing 2A
Tssr101007 11 43682011 to 43682036 25 + TSS region transcription start site region 101007
Tssr101008 11 43682038 to 43682060 22 + TSS region transcription start site region 101008
Tssr101009 11 43682066 to 43682089 23 + TSS region transcription start site region 101009
Tssr107558 11 43682656 to 43682687 31 - TSS region transcription start site region 107558
Tssr101010 11 43697820 to 43697824 4 + TSS region transcription start site region 101010
Ttc1 11 43730006 to 43747973 17967 - protein coding gene tetratricopeptide repeat domain 1
Cpgi2752 11 43747608 to 43748154 546 CpG island CpG island 2752
Tssr107559 11 43747963 to 43748015 52 - TSS region transcription start site region 107559
Cpgi2753 11 43766933 to 43767216 283 CpG island CpG island 2753
Adra1b 11 43774606 to 43901210 126604 - protein coding gene adrenergic receptor, alpha 1b
Cpgi2754 11 43775759 to 43776524 765 CpG island CpG island 2754
Cpgi2755 11 43835478 to 43836803 1325 CpG island CpG island 2755
Tssr107560 11 43835978 to 43836005 27 - TSS region transcription start site region 107560
Tssr107561 11 43836243 to 43836311 68 - TSS region transcription start site region 107561
Tssr107562 11 43836451 to 43836460 9 - TSS region transcription start site region 107562
Tssr107563 11 43836469 to 43836517 48 - TSS region transcription start site region 107563
Tssr101011 11 43838943 to 43838944 1 + TSS region transcription start site region 101011
Tssr107564 11 43901187 to 43901242 55 - TSS region transcription start site region 107564
Gm12153 11 43959089 to 44134987 175898 + lincRNA gene predicted gene 12153
Tssr101012 11 44014053 to 44014064 11 + TSS region transcription start site region 101012
D11Mit21 11 44174948 to 44175104 156 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 21
Tssr101013 11 44215586 to 44215602 16 + TSS region transcription start site region 101013
Tssr101014 11 44215623 to 44215653 30 + TSS region transcription start site region 101014
Tssr107565 11 44260505 to 44260524 19 - TSS region transcription start site region 107565
Gm12154 11 44265563 to 44267209 1646 - lincRNA gene predicted gene 12154
D11Mit235 11 44373689 to 44373868 179 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 235
D11Mit237 11 44373721 to 44373868 147 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 237
Gm12155 11 44387115 to 44387274 159 - pseudogene predicted gene 12155
Cpgi2756 11 44398967 to 44399255 288 CpG island CpG island 2756
Tssr101015 11 44399980 to 44399989 9 + TSS region transcription start site region 101015
Tssr101016 11 44400060 to 44400066 6 + TSS region transcription start site region 101016
Il12b 11 44400063 to 44414033 13970 + protein coding gene interleukin 12b
Tssr101017 11 44414100 to 44414112 12 + TSS region transcription start site region 101017
Gm42073 11 44435173 to 44452492 17319 - lncRNA gene predicted gene, 42073
Ublcp1 11 44454571 to 44470498 15927 - protein coding gene ubiquitin-like domain containing CTD phosphatase 1
Gm22121 11 44469013 to 44469066 53 + miRNA gene predicted gene, 22121
Cpgi2757 11 44469791 to 44470996 1205 CpG island CpG island 2757
Tssr101018 11 44469910 to 44469926 16 + TSS region transcription start site region 101018
Tssr107566 11 44470442 to 44470459 17 - TSS region transcription start site region 107566
Tssr107567 11 44470464 to 44470513 49 - TSS region transcription start site region 107567
Tssr101019 11 44470579 to 44470606 27 + TSS region transcription start site region 101019
Gm12156 11 44479824 to 44480562 738 + pseudogene predicted gene 12156
Tssr107568 11 44496293 to 44496311 18 - TSS region transcription start site region 107568
Gm46258 11 44509114 to 44511443 2329 + lncRNA gene predicted gene, 46258
Cpgi2758 11 44518474 to 44519861 1387 CpG island CpG island 2758
Tssr101020 11 44518517 to 44518536 19 + TSS region transcription start site region 101020
Tssr101021 11 44518953 to 44518958 5 + TSS region transcription start site region 101021
Tssr101022 11 44518959 to 44519000 41 + TSS region transcription start site region 101022
Rnf145 11 44518964 to 44565520 46556 + protein coding gene ring finger protein 145
Tssr101023 11 44519405 to 44519450 45 + TSS region transcription start site region 101023
Tssr101024 11 44519457 to 44519478 21 + TSS region transcription start site region 101024
Cpgi2759 11 44519932 to 44520300 368 CpG island CpG island 2759
Tssr101025 11 44520334 to 44520343 9 + TSS region transcription start site region 101025
Tssr101026 11 44520402 to 44520440 38 + TSS region transcription start site region 101026
Tssr101027 11 44538054 to 44538058 4 + TSS region transcription start site region 101027
Tssr107569 11 44574795 to 44574799 4 - TSS region transcription start site region 107569
Tssr101028 11 44575214 to 44575218 4 + TSS region transcription start site region 101028
4930597A21Rik 11 44586317 to 44591229 4912 + lincRNA gene RIKEN cDNA 4930597A21 gene
Gm39815 11 44591357 to 44596190 4833 - lncRNA gene predicted gene, 39815
Gm37695 11 44610837 to 44617016 6179 - unclassified gene predicted gene, 37695
Cpgi2760 11 44611002 to 44611863 861 CpG island CpG island 2760
Cpgi2761 11 44612910 to 44613567 657 CpG island CpG island 2761
Cpgi2762 11 44616708 to 44617303 595 CpG island CpG island 2762
Tssr101029 11 44617286 to 44617302 16 + TSS region transcription start site region 101029
Tssr101030 11 44617310 to 44617336 26 + TSS region transcription start site region 101030
Tssr101031 11 44617354 to 44617361 7 + TSS region transcription start site region 101031
Tssr101032 11 44617375 to 44617397 22 + TSS region transcription start site region 101032
Tssr101033 11 44617487 to 44617513 26 + TSS region transcription start site region 101033
Tssr101034 11 44617514 to 44617543 29 + TSS region transcription start site region 101034
Tssr101035 11 44617551 to 44617558 7 + TSS region transcription start site region 101035
Tssr101036 11 44617613 to 44617630 17 + TSS region transcription start site region 101036
Tssr101037 11 44617647 to 44617660 13 + TSS region transcription start site region 101037
Tssr101038 11 44617689 to 44617703 14 + TSS region transcription start site region 101038
Tssr101039 11 44617867 to 44617887 20 + TSS region transcription start site region 101039
Tssr101040 11 44617928 to 44617935 7 + TSS region transcription start site region 101040
Tssr107570 11 44618065 to 44618069 4 - TSS region transcription start site region 107570
Ebf1 11 44618100 to 45008096 389996 + protein coding gene early B cell factor 1
Tssr101041 11 44618124 to 44618135 11 + TSS region transcription start site region 101041
Cpgi2763 11 44618145 to 44618629 484 CpG island CpG island 2763
Tssr101042 11 44618185 to 44618204 19 + TSS region transcription start site region 101042
Tssr101043 11 44618208 to 44618223 15 + TSS region transcription start site region 101043
Tssr101044 11 44618578 to 44618591 13 + TSS region transcription start site region 101044
D11Mit175 11 44619481 to 44619592 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 175
Cpgi2764 11 44619772 to 44620557 785 CpG island CpG island 2764
Tssr3469 11 44620817 to 44620838 21 + TSS region transcription start site region 3469
Tssr101045 11 44621150 to 44621181 31 + TSS region transcription start site region 101045
Tssr101046 11 44621182 to 44621192 10 + TSS region transcription start site region 101046
Tssr101047 11 44621196 to 44621205 9 + TSS region transcription start site region 101047
Tssr101048 11 44621211 to 44621227 16 + TSS region transcription start site region 101048
Tssr3470 11 44621610 to 44621614 4 + TSS region transcription start site region 3470