Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:4284857-4904875

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11958 11 4285460 to 4286939 1479 + lincRNA gene predicted gene 11958
Tssr100125 11 4316156 to 4316168 12 + TSS region transcription start site region 100125
Gm24803 11 4324149 to 4324255 106 - snRNA gene predicted gene, 24803
Hormad2 11 4345814 to 4441105 95291 - protein coding gene HORMA domain containing 2
Tssr106549 11 4346898 to 4346908 10 - TSS region transcription start site region 106549
Tssr106550 11 4346913 to 4346922 9 - TSS region transcription start site region 106550
Tssr100126 11 4424090 to 4424104 14 + TSS region transcription start site region 100126
Tssr106551 11 4427279 to 4427290 11 - TSS region transcription start site region 106551
Tssr100127 11 4435885 to 4435887 2 + TSS region transcription start site region 100127
Cpgi2513 11 4440805 to 4441263 458 CpG island CpG island 2513
Tssr106552 11 4464293 to 4464302 9 - TSS region transcription start site region 106552
Mtmr3 11 4480868 to 4594862 113994 - protein coding gene myotubularin related protein 3
Tssr106553 11 4497525 to 4497532 7 - TSS region transcription start site region 106553
Tssr106554 11 4497549 to 4497554 5 - TSS region transcription start site region 106554
Tssr106555 11 4497556 to 4497585 29 - TSS region transcription start site region 106555
Tssr106556 11 4497587 to 4497592 5 - TSS region transcription start site region 106556
D11Mit72 11 4557896 to 4558058 162 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 72
Gm11960 11 4563627 to 4564612 985 + pseudogene predicted gene 11960
Tssr106557 11 4579973 to 4579989 16 - TSS region transcription start site region 106557
Tssr106558 11 4593805 to 4593809 4 - TSS region transcription start site region 106558
Cpgi2514 11 4594111 to 4595021 910 CpG island CpG island 2514
Tssr106559 11 4594750 to 4594820 70 - TSS region transcription start site region 106559
Tssr106560 11 4594825 to 4594828 3 - TSS region transcription start site region 106560
Tssr106561 11 4594857 to 4594875 18 - TSS region transcription start site region 106561
Gm11032 11 4620067 to 4621698 1631 + protein coding gene predicted gene 11032
Cpgi2515 11 4620262 to 4620506 244 CpG island CpG island 2515
Gm11961 11 4620275 to 4630011 9736 - antisense lncRNA gene predicted gene 11961
Cpgi2516 11 4637582 to 4638028 446 CpG island CpG island 2516
Tssr100128 11 4637701 to 4637711 10 + TSS region transcription start site region 100128
Tssr100129 11 4637719 to 4637726 7 + TSS region transcription start site region 100129
Tssr100130 11 4637734 to 4637789 55 + TSS region transcription start site region 100130
Ascc2 11 4637747 to 4685699 47952 + protein coding gene activating signal cointegrator 1 complex subunit 2
Uqcr10 11 4701973 to 4704342 2369 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit X
Cpgi2517 11 4703993 to 4704747 754 CpG island CpG island 2517
Tssr106562 11 4704303 to 4704330 27 - TSS region transcription start site region 106562
Tssr106563 11 4704334 to 4704351 17 - TSS region transcription start site region 106563
Tssr100131 11 4704616 to 4704631 15 + TSS region transcription start site region 100131
Tssr100132 11 4704642 to 4704702 60 + TSS region transcription start site region 100132
Zmat5 11 4704678 to 4737669 32991 + protein coding gene zinc finger, matrin type 5
Tssr100133 11 4729858 to 4729867 9 + TSS region transcription start site region 100133
Tssr100134 11 4729870 to 4729888 18 + TSS region transcription start site region 100134
Tssr100135 11 4729889 to 4729894 5 + TSS region transcription start site region 100135
Tssr100136 11 4729898 to 4729907 9 + TSS region transcription start site region 100136
Tssr100137 11 4736240 to 4736263 23 + TSS region transcription start site region 100137
Cabp7 11 4738821 to 4746778 7957 - protein coding gene calcium binding protein 7
Gm35102 11 4740521 to 4751514 10993 + lncRNA gene predicted gene, 35102
Cpgi2518 11 4745482 to 4748036 2554 CpG island CpG island 2518
Tssr106564 11 4747152 to 4747188 36 - TSS region transcription start site region 106564
Nf2 11 4765845 to 4849536 83691 - protein coding gene neurofibromin 2
D11Mcg1 11 4767852 to 4768136 284 DNA segment DNA segment, Chr 11, McGill University 1
Tssr106565 11 4789734 to 4789760 26 - TSS region transcription start site region 106565
Tssr106566 11 4789773 to 4789782 9 - TSS region transcription start site region 106566
Tssr106567 11 4789792 to 4789813 21 - TSS region transcription start site region 106567
Tssr106568 11 4789815 to 4789828 13 - TSS region transcription start site region 106568
Tssr106569 11 4789834 to 4789842 8 - TSS region transcription start site region 106569
Tssr106570 11 4804003 to 4804023 20 - TSS region transcription start site region 106570
Tssr106571 11 4807381 to 4807389 8 - TSS region transcription start site region 106571
Tssr106572 11 4808322 to 4808329 7 - TSS region transcription start site region 106572
Tssr106573 11 4808342 to 4808351 9 - TSS region transcription start site region 106573
Tssr106574 11 4808353 to 4808356 3 - TSS region transcription start site region 106574
Tssr106575 11 4808376 to 4808387 11 - TSS region transcription start site region 106575
Tssr106576 11 4816655 to 4816664 9 - TSS region transcription start site region 106576
Tssr106577 11 4833048 to 4833057 9 - TSS region transcription start site region 106577
Tssr106578 11 4833077 to 4833084 7 - TSS region transcription start site region 106578
Tssr106579 11 4833114 to 4833123 9 - TSS region transcription start site region 106579
Cpgi2519 11 4848696 to 4849869 1173 CpG island CpG island 2519
Tssr100138 11 4848750 to 4848786 36 + TSS region transcription start site region 100138
Tssr106580 11 4849101 to 4849118 17 - TSS region transcription start site region 106580
Tssr106581 11 4849323 to 4849343 20 - TSS region transcription start site region 106581
Tssr106582 11 4849345 to 4849473 128 - TSS region transcription start site region 106582
Gm17793 11 4864785 to 4865385 600 - pseudogene predicted gene, 17793
Cpgi2520 11 4873883 to 4874316 433 CpG island CpG island 2520
Nipsnap1 11 4873959 to 4894201 20242 + protein coding gene nipsnap homolog 1
Tssr100139 11 4873960 to 4874005 45 + TSS region transcription start site region 100139
Tssr100140 11 4883186 to 4883222 36 + TSS region transcription start site region 100140
Cpgi2521 11 4883563 to 4883786 223 CpG island CpG island 2521
Tssr100141 11 4887761 to 4887767 6 + TSS region transcription start site region 100141
Tssr100142 11 4891205 to 4891210 5 + TSS region transcription start site region 100142
Mir6918 11 4891345 to 4891402 57 + miRNA gene microRNA 6918
Cpgi2522 11 4895008 to 4895893 885 CpG island CpG island 2522
Tssr100143 11 4895316 to 4895327 11 + TSS region transcription start site region 100143
Thoc5 11 4895320 to 4928867 33547 + protein coding gene THO complex 5
Tssr100144 11 4895328 to 4895354 26 + TSS region transcription start site region 100144
Tssr100145 11 4902242 to 4902247 5 + TSS region transcription start site region 100145
Tssr100146 11 4902279 to 4902291 12 + TSS region transcription start site region 100146
Eae44a 11 21429532 to 4557896 -16871636 QTL experimental allergic encephalomyelitis susceptibility 44a