Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:4272525-4722532

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11959 11 4274089 to 4281931 7842 + lincRNA gene predicted gene 11959
Gm11958 11 4285460 to 4286939 1479 + lincRNA gene predicted gene 11958
Tssr100125 11 4316156 to 4316168 12 + TSS region transcription start site region 100125
Gm24803 11 4324149 to 4324255 106 - snRNA gene predicted gene, 24803
Hormad2 11 4345814 to 4441105 95291 - protein coding gene HORMA domain containing 2
Tssr106549 11 4346898 to 4346908 10 - TSS region transcription start site region 106549
Tssr106550 11 4346913 to 4346922 9 - TSS region transcription start site region 106550
Tssr100126 11 4424090 to 4424104 14 + TSS region transcription start site region 100126
Tssr106551 11 4427279 to 4427290 11 - TSS region transcription start site region 106551
Tssr100127 11 4435885 to 4435887 2 + TSS region transcription start site region 100127
Cpgi2513 11 4440805 to 4441263 458 CpG island CpG island 2513
Tssr106552 11 4464293 to 4464302 9 - TSS region transcription start site region 106552
Mtmr3 11 4480868 to 4594862 113994 - protein coding gene myotubularin related protein 3
Tssr106553 11 4497525 to 4497532 7 - TSS region transcription start site region 106553
Tssr106554 11 4497549 to 4497554 5 - TSS region transcription start site region 106554
Tssr106555 11 4497556 to 4497585 29 - TSS region transcription start site region 106555
Tssr106556 11 4497587 to 4497592 5 - TSS region transcription start site region 106556
D11Mit72 11 4557896 to 4558058 162 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 72
Gm11960 11 4563627 to 4564612 985 + pseudogene predicted gene 11960
Tssr106557 11 4579973 to 4579989 16 - TSS region transcription start site region 106557
Tssr106558 11 4593805 to 4593809 4 - TSS region transcription start site region 106558
Cpgi2514 11 4594111 to 4595021 910 CpG island CpG island 2514
Tssr106559 11 4594750 to 4594820 70 - TSS region transcription start site region 106559
Tssr106560 11 4594825 to 4594828 3 - TSS region transcription start site region 106560
Tssr106561 11 4594857 to 4594875 18 - TSS region transcription start site region 106561
Gm11032 11 4620067 to 4621698 1631 + protein coding gene predicted gene 11032
Cpgi2515 11 4620262 to 4620506 244 CpG island CpG island 2515
Gm11961 11 4620275 to 4630011 9736 - antisense lncRNA gene predicted gene 11961
Cpgi2516 11 4637582 to 4638028 446 CpG island CpG island 2516
Tssr100128 11 4637701 to 4637711 10 + TSS region transcription start site region 100128
Tssr100129 11 4637719 to 4637726 7 + TSS region transcription start site region 100129
Tssr100130 11 4637734 to 4637789 55 + TSS region transcription start site region 100130
Ascc2 11 4637747 to 4685699 47952 + protein coding gene activating signal cointegrator 1 complex subunit 2
Uqcr10 11 4701973 to 4704342 2369 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit X
Cpgi2517 11 4703993 to 4704747 754 CpG island CpG island 2517
Tssr106562 11 4704303 to 4704330 27 - TSS region transcription start site region 106562
Tssr106563 11 4704334 to 4704351 17 - TSS region transcription start site region 106563
Tssr100131 11 4704616 to 4704631 15 + TSS region transcription start site region 100131
Tssr100132 11 4704642 to 4704702 60 + TSS region transcription start site region 100132
Zmat5 11 4704678 to 4737669 32991 + protein coding gene zinc finger, matrin type 5
Eae44a 11 21429532 to 4557896 -16871636 QTL experimental allergic encephalomyelitis susceptibility 44a