Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:4252525-4742532

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lif 11 4257568 to 4272514 14946 + protein coding gene leukemia inhibitory factor
Tssr100118 11 4257581 to 4257592 11 + TSS region transcription start site region 100118
Tssr100119 11 4260823 to 4260824 1 + TSS region transcription start site region 100119
Tssr3415 11 4260878 to 4260915 37 + TSS region transcription start site region 3415
Tssr3416 11 4261568 to 4261599 31 + TSS region transcription start site region 3416
Tssr100120 11 4264300 to 4264313 13 + TSS region transcription start site region 100120
Tssr100121 11 4265244 to 4265264 20 + TSS region transcription start site region 100121
Cpgi2511 11 4266454 to 4267130 676 CpG island CpG island 2511
Tssr100122 11 4266481 to 4266497 16 + TSS region transcription start site region 100122
Tssr100123 11 4266525 to 4266544 19 + TSS region transcription start site region 100123
Tssr100124 11 4266667 to 4266673 6 + TSS region transcription start site region 100124
D11Mit16.1 11 4269500 to 4269611 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16.1
D11Mit16 11 4269560 to 4269681 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16
D11Mit16.2 11 4269694 to 4269823 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16.2
D11Mit106 11 4270753 to 4270883 130 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 106
Cpgi2512 11 4271573 to 4271838 265 CpG island CpG island 2512
Gm11959 11 4274089 to 4281931 7842 + lincRNA gene predicted gene 11959
Gm11958 11 4285460 to 4286939 1479 + lincRNA gene predicted gene 11958
Tssr100125 11 4316156 to 4316168 12 + TSS region transcription start site region 100125
Gm24803 11 4324149 to 4324255 106 - snRNA gene predicted gene, 24803
Hormad2 11 4345814 to 4441105 95291 - protein coding gene HORMA domain containing 2
Tssr106549 11 4346898 to 4346908 10 - TSS region transcription start site region 106549
Tssr106550 11 4346913 to 4346922 9 - TSS region transcription start site region 106550
Tssr100126 11 4424090 to 4424104 14 + TSS region transcription start site region 100126
Tssr106551 11 4427279 to 4427290 11 - TSS region transcription start site region 106551
Tssr100127 11 4435885 to 4435887 2 + TSS region transcription start site region 100127
Cpgi2513 11 4440805 to 4441263 458 CpG island CpG island 2513
Tssr106552 11 4464293 to 4464302 9 - TSS region transcription start site region 106552
Mtmr3 11 4480868 to 4594862 113994 - protein coding gene myotubularin related protein 3
Tssr106553 11 4497525 to 4497532 7 - TSS region transcription start site region 106553
Tssr106554 11 4497549 to 4497554 5 - TSS region transcription start site region 106554
Tssr106555 11 4497556 to 4497585 29 - TSS region transcription start site region 106555
Tssr106556 11 4497587 to 4497592 5 - TSS region transcription start site region 106556
D11Mit72 11 4557896 to 4558058 162 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 72
Gm11960 11 4563627 to 4564612 985 + pseudogene predicted gene 11960
Tssr106557 11 4579973 to 4579989 16 - TSS region transcription start site region 106557
Tssr106558 11 4593805 to 4593809 4 - TSS region transcription start site region 106558
Cpgi2514 11 4594111 to 4595021 910 CpG island CpG island 2514
Tssr106559 11 4594750 to 4594820 70 - TSS region transcription start site region 106559
Tssr106560 11 4594825 to 4594828 3 - TSS region transcription start site region 106560
Tssr106561 11 4594857 to 4594875 18 - TSS region transcription start site region 106561
Gm11032 11 4620067 to 4621698 1631 + protein coding gene predicted gene 11032
Cpgi2515 11 4620262 to 4620506 244 CpG island CpG island 2515
Gm11961 11 4620275 to 4630011 9736 - antisense lncRNA gene predicted gene 11961
Cpgi2516 11 4637582 to 4638028 446 CpG island CpG island 2516
Tssr100128 11 4637701 to 4637711 10 + TSS region transcription start site region 100128
Tssr100129 11 4637719 to 4637726 7 + TSS region transcription start site region 100129
Tssr100130 11 4637734 to 4637789 55 + TSS region transcription start site region 100130
Ascc2 11 4637747 to 4685699 47952 + protein coding gene activating signal cointegrator 1 complex subunit 2
Uqcr10 11 4701973 to 4704342 2369 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit X
Cpgi2517 11 4703993 to 4704747 754 CpG island CpG island 2517
Tssr106562 11 4704303 to 4704330 27 - TSS region transcription start site region 106562
Tssr106563 11 4704334 to 4704351 17 - TSS region transcription start site region 106563
Tssr100131 11 4704616 to 4704631 15 + TSS region transcription start site region 100131
Tssr100132 11 4704642 to 4704702 60 + TSS region transcription start site region 100132
Zmat5 11 4704678 to 4737669 32991 + protein coding gene zinc finger, matrin type 5
Tssr100133 11 4729858 to 4729867 9 + TSS region transcription start site region 100133
Tssr100134 11 4729870 to 4729888 18 + TSS region transcription start site region 100134
Tssr100135 11 4729889 to 4729894 5 + TSS region transcription start site region 100135
Tssr100136 11 4729898 to 4729907 9 + TSS region transcription start site region 100136
Tssr100137 11 4736240 to 4736263 23 + TSS region transcription start site region 100137
Cabp7 11 4738821 to 4746778 7957 - protein coding gene calcium binding protein 7
Gm35102 11 4740521 to 4751514 10993 + lncRNA gene predicted gene, 35102
Eae44a 11 21429532 to 4557896 -16871636 QTL experimental allergic encephalomyelitis susceptibility 44a