Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:4173322-5443329

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247 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sf3a1 11 4160354 to 4182541 22187 + protein coding gene splicing factor 3a, subunit 1
Tssr100099 11 4175054 to 4175078 24 + TSS region transcription start site region 100099
Tssr100100 11 4178112 to 4178140 28 + TSS region transcription start site region 100100
Cpgi2508 11 4186396 to 4187674 1278 CpG island CpG island 2508
Tssr100101 11 4186807 to 4186865 58 + TSS region transcription start site region 100101
Tbc1d10a 11 4186833 to 4215507 28674 + protein coding gene TBC1 domain family, member 10a
Tssr100102 11 4186866 to 4186877 11 + TSS region transcription start site region 100102
D11Dcr2 11 4194818 to 4194911 93 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 2
Cpgi2509 11 4217914 to 4218681 767 CpG island CpG island 2509
Tssr100103 11 4218220 to 4218249 29 + TSS region transcription start site region 100103
Castor1 11 4218225 to 4222409 4184 + protein coding gene cytosolic arginine sensor for mTORC1 subunit 1
Tssr100104 11 4218255 to 4218279 24 + TSS region transcription start site region 100104
Tssr100105 11 4220702 to 4220742 40 + TSS region transcription start site region 100105
Tssr100106 11 4223619 to 4223638 19 + TSS region transcription start site region 100106
Tssr100107 11 4223642 to 4223653 11 + TSS region transcription start site region 100107
Tssr100108 11 4223692 to 4223710 18 + TSS region transcription start site region 100108
Gm11956 11 4230754 to 4231265 511 - pseudogene predicted gene 11956
Tssr106544 11 4231655 to 4231658 3 - TSS region transcription start site region 106544
Tssr106545 11 4232621 to 4232637 16 - TSS region transcription start site region 106545
Tssr100109 11 4232999 to 4233012 13 + TSS region transcription start site region 100109
Tssr3412 11 4233053 to 4233064 11 + TSS region transcription start site region 3412
Tssr100110 11 4236411 to 4236433 22 + TSS region transcription start site region 100110
Tssr100111 11 4236442 to 4236456 14 + TSS region transcription start site region 100111
Tssr106546 11 4236519 to 4236553 34 - TSS region transcription start site region 106546
Tssr3413 11 4236779 to 4236790 11 + TSS region transcription start site region 3413
Osm 11 4236785 to 4241026 4241 + protein coding gene oncostatin M
Tssr100112 11 4236799 to 4236806 7 + TSS region transcription start site region 100112
Tssr100113 11 4236823 to 4236837 14 + TSS region transcription start site region 100113
Tssr100114 11 4236861 to 4236868 7 + TSS region transcription start site region 100114
Tssr3414 11 4236877 to 4236882 5 + TSS region transcription start site region 3414
Tssr106547 11 4237526 to 4237547 21 - TSS region transcription start site region 106547
Cpgi2510 11 4237666 to 4237889 223 CpG island CpG island 2510
Tssr100115 11 4237785 to 4237803 18 + TSS region transcription start site region 100115
Tssr100116 11 4238107 to 4238116 9 + TSS region transcription start site region 100116
Tssr106548 11 4240171 to 4240182 11 - TSS region transcription start site region 106548
D11Mit304 11 4249028 to 4249117 89 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 304
Tssr100117 11 4250629 to 4250636 7 + TSS region transcription start site region 100117
Lif 11 4257568 to 4272514 14946 + protein coding gene leukemia inhibitory factor
Tssr100118 11 4257581 to 4257592 11 + TSS region transcription start site region 100118
Tssr100119 11 4260823 to 4260824 1 + TSS region transcription start site region 100119
Tssr3415 11 4260878 to 4260915 37 + TSS region transcription start site region 3415
Tssr3416 11 4261568 to 4261599 31 + TSS region transcription start site region 3416
Tssr100120 11 4264300 to 4264313 13 + TSS region transcription start site region 100120
Tssr100121 11 4265244 to 4265264 20 + TSS region transcription start site region 100121
Cpgi2511 11 4266454 to 4267130 676 CpG island CpG island 2511
Tssr100122 11 4266481 to 4266497 16 + TSS region transcription start site region 100122
Tssr100123 11 4266525 to 4266544 19 + TSS region transcription start site region 100123
Tssr100124 11 4266667 to 4266673 6 + TSS region transcription start site region 100124
D11Mit16.1 11 4269500 to 4269611 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16.1
D11Mit16 11 4269560 to 4269681 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16
D11Mit16.2 11 4269694 to 4269823 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16.2
D11Mit106 11 4270753 to 4270883 130 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 106
Cpgi2512 11 4271573 to 4271838 265 CpG island CpG island 2512
Gm11959 11 4274089 to 4281931 7842 + lincRNA gene predicted gene 11959
Gm11958 11 4285460 to 4286939 1479 + lincRNA gene predicted gene 11958
Tssr100125 11 4316156 to 4316168 12 + TSS region transcription start site region 100125
Gm24803 11 4324149 to 4324255 106 - snRNA gene predicted gene, 24803
Hormad2 11 4345814 to 4441105 95291 - protein coding gene HORMA domain containing 2
Tssr106549 11 4346898 to 4346908 10 - TSS region transcription start site region 106549
Tssr106550 11 4346913 to 4346922 9 - TSS region transcription start site region 106550
Tssr100126 11 4424090 to 4424104 14 + TSS region transcription start site region 100126
Tssr106551 11 4427279 to 4427290 11 - TSS region transcription start site region 106551
Tssr100127 11 4435885 to 4435887 2 + TSS region transcription start site region 100127
Cpgi2513 11 4440805 to 4441263 458 CpG island CpG island 2513
Tssr106552 11 4464293 to 4464302 9 - TSS region transcription start site region 106552
Mtmr3 11 4480868 to 4594862 113994 - protein coding gene myotubularin related protein 3
Tssr106553 11 4497525 to 4497532 7 - TSS region transcription start site region 106553
Tssr106554 11 4497549 to 4497554 5 - TSS region transcription start site region 106554
Tssr106555 11 4497556 to 4497585 29 - TSS region transcription start site region 106555
Tssr106556 11 4497587 to 4497592 5 - TSS region transcription start site region 106556
D11Mit72 11 4557896 to 4558058 162 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 72
Gm11960 11 4563627 to 4564612 985 + pseudogene predicted gene 11960
Tssr106557 11 4579973 to 4579989 16 - TSS region transcription start site region 106557
Tssr106558 11 4593805 to 4593809 4 - TSS region transcription start site region 106558
Cpgi2514 11 4594111 to 4595021 910 CpG island CpG island 2514
Tssr106559 11 4594750 to 4594820 70 - TSS region transcription start site region 106559
Tssr106560 11 4594825 to 4594828 3 - TSS region transcription start site region 106560
Tssr106561 11 4594857 to 4594875 18 - TSS region transcription start site region 106561
Gm11032 11 4620067 to 4621698 1631 + protein coding gene predicted gene 11032
Cpgi2515 11 4620262 to 4620506 244 CpG island CpG island 2515
Gm11961 11 4620275 to 4630011 9736 - antisense lncRNA gene predicted gene 11961
Cpgi2516 11 4637582 to 4638028 446 CpG island CpG island 2516
Tssr100128 11 4637701 to 4637711 10 + TSS region transcription start site region 100128
Tssr100129 11 4637719 to 4637726 7 + TSS region transcription start site region 100129
Tssr100130 11 4637734 to 4637789 55 + TSS region transcription start site region 100130
Ascc2 11 4637747 to 4685699 47952 + protein coding gene activating signal cointegrator 1 complex subunit 2
Uqcr10 11 4701973 to 4704342 2369 - protein coding gene ubiquinol-cytochrome c reductase, complex III subunit X
Cpgi2517 11 4703993 to 4704747 754 CpG island CpG island 2517
Tssr106562 11 4704303 to 4704330 27 - TSS region transcription start site region 106562
Tssr106563 11 4704334 to 4704351 17 - TSS region transcription start site region 106563
Tssr100131 11 4704616 to 4704631 15 + TSS region transcription start site region 100131
Tssr100132 11 4704642 to 4704702 60 + TSS region transcription start site region 100132
Zmat5 11 4704678 to 4737669 32991 + protein coding gene zinc finger, matrin type 5
Tssr100133 11 4729858 to 4729867 9 + TSS region transcription start site region 100133
Tssr100134 11 4729870 to 4729888 18 + TSS region transcription start site region 100134
Tssr100135 11 4729889 to 4729894 5 + TSS region transcription start site region 100135
Tssr100136 11 4729898 to 4729907 9 + TSS region transcription start site region 100136
Tssr100137 11 4736240 to 4736263 23 + TSS region transcription start site region 100137
Cabp7 11 4738821 to 4746778 7957 - protein coding gene calcium binding protein 7
Gm35102 11 4740521 to 4751514 10993 + lncRNA gene predicted gene, 35102
Cpgi2518 11 4745482 to 4748036 2554 CpG island CpG island 2518
Tssr106564 11 4747152 to 4747188 36 - TSS region transcription start site region 106564
Nf2 11 4765845 to 4849536 83691 - protein coding gene neurofibromin 2
D11Mcg1 11 4767852 to 4768136 284 DNA segment DNA segment, Chr 11, McGill University 1
Tssr106565 11 4789734 to 4789760 26 - TSS region transcription start site region 106565
Tssr106566 11 4789773 to 4789782 9 - TSS region transcription start site region 106566
Tssr106567 11 4789792 to 4789813 21 - TSS region transcription start site region 106567
Tssr106568 11 4789815 to 4789828 13 - TSS region transcription start site region 106568
Tssr106569 11 4789834 to 4789842 8 - TSS region transcription start site region 106569
Tssr106570 11 4804003 to 4804023 20 - TSS region transcription start site region 106570
Tssr106571 11 4807381 to 4807389 8 - TSS region transcription start site region 106571
Tssr106572 11 4808322 to 4808329 7 - TSS region transcription start site region 106572
Tssr106573 11 4808342 to 4808351 9 - TSS region transcription start site region 106573
Tssr106574 11 4808353 to 4808356 3 - TSS region transcription start site region 106574
Tssr106575 11 4808376 to 4808387 11 - TSS region transcription start site region 106575
Tssr106576 11 4816655 to 4816664 9 - TSS region transcription start site region 106576
Tssr106577 11 4833048 to 4833057 9 - TSS region transcription start site region 106577
Tssr106578 11 4833077 to 4833084 7 - TSS region transcription start site region 106578
Tssr106579 11 4833114 to 4833123 9 - TSS region transcription start site region 106579
Cpgi2519 11 4848696 to 4849869 1173 CpG island CpG island 2519
Tssr100138 11 4848750 to 4848786 36 + TSS region transcription start site region 100138
Tssr106580 11 4849101 to 4849118 17 - TSS region transcription start site region 106580
Tssr106581 11 4849323 to 4849343 20 - TSS region transcription start site region 106581
Tssr106582 11 4849345 to 4849473 128 - TSS region transcription start site region 106582
Gm17793 11 4864785 to 4865385 600 - pseudogene predicted gene, 17793
Cpgi2520 11 4873883 to 4874316 433 CpG island CpG island 2520
Nipsnap1 11 4873959 to 4894201 20242 + protein coding gene nipsnap homolog 1
Tssr100139 11 4873960 to 4874005 45 + TSS region transcription start site region 100139
Tssr100140 11 4883186 to 4883222 36 + TSS region transcription start site region 100140
Cpgi2521 11 4883563 to 4883786 223 CpG island CpG island 2521
Tssr100141 11 4887761 to 4887767 6 + TSS region transcription start site region 100141
Tssr100142 11 4891205 to 4891210 5 + TSS region transcription start site region 100142
Mir6918 11 4891345 to 4891402 57 + miRNA gene microRNA 6918
Cpgi2522 11 4895008 to 4895893 885 CpG island CpG island 2522
Tssr100143 11 4895316 to 4895327 11 + TSS region transcription start site region 100143
Thoc5 11 4895320 to 4928867 33547 + protein coding gene THO complex 5
Tssr100144 11 4895328 to 4895354 26 + TSS region transcription start site region 100144
Tssr100145 11 4902242 to 4902247 5 + TSS region transcription start site region 100145
Tssr100146 11 4902279 to 4902291 12 + TSS region transcription start site region 100146
AA413626 11 4918516 to 4918918 402 + pseudogene expressed sequence AA413626
Gm35321 11 4934377 to 4943237 8860 + lncRNA gene predicted gene, 35321
Nefh 11 4938754 to 4948064 9310 - protein coding gene neurofilament, heavy polypeptide
Tssr106583 11 4939535 to 4939546 11 - TSS region transcription start site region 106583
Tssr106584 11 4939621 to 4939632 11 - TSS region transcription start site region 106584
Tssr106585 11 4939680 to 4939694 14 - TSS region transcription start site region 106585
Tssr106586 11 4939709 to 4939724 15 - TSS region transcription start site region 106586
Tssr106587 11 4939809 to 4939818 9 - TSS region transcription start site region 106587
Tssr106588 11 4939933 to 4939941 8 - TSS region transcription start site region 106588
Tssr106589 11 4940041 to 4940050 9 - TSS region transcription start site region 106589
Tssr100147 11 4941150 to 4941166 16 + TSS region transcription start site region 100147
Tssr100148 11 4941272 to 4941285 13 + TSS region transcription start site region 100148
Tssr106590 11 4941394 to 4941405 11 - TSS region transcription start site region 106590
Tssr106591 11 4943923 to 4943934 11 - TSS region transcription start site region 106591
Gm39571 11 4943939 to 4944527 588 + lncRNA gene predicted gene, 39571
Cpgi2523 11 4946656 to 4948492 1836 CpG island CpG island 2523
Tssr106592 11 4947105 to 4947134 29 - TSS region transcription start site region 106592
Tssr100149 11 4947356 to 4947391 35 + TSS region transcription start site region 100149
Tssr100150 11 4947473 to 4947511 38 + TSS region transcription start site region 100150
Tssr106593 11 4947991 to 4948009 18 - TSS region transcription start site region 106593
Cpgi2524 11 4949275 to 4949567 292 CpG island CpG island 2524
Tssr106594 11 4984795 to 4984802 7 - TSS region transcription start site region 106594
Cpgi2525 11 4986721 to 4987660 939 CpG island CpG island 2525
Tssr106595 11 4986735 to 4986747 12 - TSS region transcription start site region 106595
Ap1b1 11 4986824 to 5042791 55967 + protein coding gene adaptor protein complex AP-1, beta 1 subunit
Tssr100151 11 4986883 to 4986894 11 + TSS region transcription start site region 100151
Tssr100152 11 4986898 to 4986949 51 + TSS region transcription start site region 100152
Tssr100153 11 4986950 to 4986964 14 + TSS region transcription start site region 100153
Tssr106596 11 4992566 to 4992597 31 - TSS region transcription start site region 106596
Tssr100154 11 5009464 to 5009483 19 + TSS region transcription start site region 100154
Tssr100155 11 5009494 to 5009506 12 + TSS region transcription start site region 100155
Tssr100156 11 5009515 to 5009526 11 + TSS region transcription start site region 100156
Tssr100157 11 5012569 to 5012580 11 + TSS region transcription start site region 100157
Tssr100158 11 5012582 to 5012608 26 + TSS region transcription start site region 100158
Tssr100159 11 5012634 to 5012647 13 + TSS region transcription start site region 100159
Tssr100160 11 5012675 to 5012705 30 + TSS region transcription start site region 100160
Gm47296 11 5038204 to 5038307 103 + miRNA gene predicted gene, 47296
Gm24958 11 5038211 to 5038307 96 + snoRNA gene predicted gene, 24958
Tssr100161 11 5039152 to 5039164 12 + TSS region transcription start site region 100161
Gas2l1 11 5054132 to 5065327 11195 - protein coding gene growth arrest-specific 2 like 1
Cpgi2526 11 5057660 to 5058669 1009 CpG island CpG island 2526
Tssr100162 11 5058021 to 5058045 24 + TSS region transcription start site region 100162
Tssr100163 11 5058111 to 5058147 36 + TSS region transcription start site region 100163
Rasl10a 11 5058128 to 5060384 2256 + protein coding gene RAS-like, family 10, member A
Cpgi2527 11 5059489 to 5060149 660 CpG island CpG island 2527
Cpgi2528 11 5061126 to 5062481 1355 CpG island CpG island 2528
Tssr106597 11 5061780 to 5061804 24 - TSS region transcription start site region 106597
Tssr3417 11 5061969 to 5061976 7 - TSS region transcription start site region 3417
Tssr106598 11 5061993 to 5062034 41 - TSS region transcription start site region 106598
Tssr106599 11 5063852 to 5063885 33 - TSS region transcription start site region 106599
Cpgi2529 11 5063944 to 5065672 1728 CpG island CpG island 2529
Tssr106600 11 5065276 to 5065329 53 - TSS region transcription start site region 106600
Ewsr1 11 5069687 to 5099099 29412 - protein coding gene Ewing sarcoma breakpoint region 1
Tssr106601 11 5074878 to 5074882 4 - TSS region transcription start site region 106601
Tssr106602 11 5079794 to 5079800 6 - TSS region transcription start site region 106602
Cpgi2530 11 5098233 to 5100126 1893 CpG island CpG island 2530
Tssr106603 11 5098750 to 5098759 9 - TSS region transcription start site region 106603
Tssr100164 11 5098915 to 5098926 11 + TSS region transcription start site region 100164
Tssr106604 11 5099036 to 5099050 14 - TSS region transcription start site region 106604
Tssr106605 11 5099053 to 5099081 28 - TSS region transcription start site region 106605
Tssr106606 11 5099084 to 5099095 11 - TSS region transcription start site region 106606