Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:4167914-4268681

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48 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sf3a1 11 4160354 to 4182541 22187 + protein coding gene splicing factor 3a, subunit 1
Tssr100099 11 4175054 to 4175078 24 + TSS region transcription start site region 100099
Tssr100100 11 4178112 to 4178140 28 + TSS region transcription start site region 100100
Cpgi2508 11 4186396 to 4187674 1278 CpG island CpG island 2508
Tssr100101 11 4186807 to 4186865 58 + TSS region transcription start site region 100101
Tbc1d10a 11 4186833 to 4215507 28674 + protein coding gene TBC1 domain family, member 10a
Tssr100102 11 4186866 to 4186877 11 + TSS region transcription start site region 100102
D11Dcr2 11 4194818 to 4194911 93 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 2
Cpgi2509 11 4217914 to 4218681 767 CpG island CpG island 2509
Tssr100103 11 4218220 to 4218249 29 + TSS region transcription start site region 100103
Castor1 11 4218225 to 4222409 4184 + protein coding gene cytosolic arginine sensor for mTORC1 subunit 1
Tssr100104 11 4218255 to 4218279 24 + TSS region transcription start site region 100104
Tssr100105 11 4220702 to 4220742 40 + TSS region transcription start site region 100105
Tssr100106 11 4223619 to 4223638 19 + TSS region transcription start site region 100106
Tssr100107 11 4223642 to 4223653 11 + TSS region transcription start site region 100107
Tssr100108 11 4223692 to 4223710 18 + TSS region transcription start site region 100108
Gm11956 11 4230754 to 4231265 511 - pseudogene predicted gene 11956
Tssr106544 11 4231655 to 4231658 3 - TSS region transcription start site region 106544
Tssr106545 11 4232621 to 4232637 16 - TSS region transcription start site region 106545
Tssr100109 11 4232999 to 4233012 13 + TSS region transcription start site region 100109
Tssr3412 11 4233053 to 4233064 11 + TSS region transcription start site region 3412
Tssr100110 11 4236411 to 4236433 22 + TSS region transcription start site region 100110
Tssr100111 11 4236442 to 4236456 14 + TSS region transcription start site region 100111
Tssr106546 11 4236519 to 4236553 34 - TSS region transcription start site region 106546
Tssr3413 11 4236779 to 4236790 11 + TSS region transcription start site region 3413
Osm 11 4236785 to 4241026 4241 + protein coding gene oncostatin M
Tssr100112 11 4236799 to 4236806 7 + TSS region transcription start site region 100112
Tssr100113 11 4236823 to 4236837 14 + TSS region transcription start site region 100113
Tssr100114 11 4236861 to 4236868 7 + TSS region transcription start site region 100114
Tssr3414 11 4236877 to 4236882 5 + TSS region transcription start site region 3414
Tssr106547 11 4237526 to 4237547 21 - TSS region transcription start site region 106547
Cpgi2510 11 4237666 to 4237889 223 CpG island CpG island 2510
Tssr100115 11 4237785 to 4237803 18 + TSS region transcription start site region 100115
Tssr100116 11 4238107 to 4238116 9 + TSS region transcription start site region 100116
Tssr106548 11 4240171 to 4240182 11 - TSS region transcription start site region 106548
D11Mit304 11 4249028 to 4249117 89 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 304
Tssr100117 11 4250629 to 4250636 7 + TSS region transcription start site region 100117
Lif 11 4257568 to 4272514 14946 + protein coding gene leukemia inhibitory factor
Tssr100118 11 4257581 to 4257592 11 + TSS region transcription start site region 100118
Tssr100119 11 4260823 to 4260824 1 + TSS region transcription start site region 100119
Tssr3415 11 4260878 to 4260915 37 + TSS region transcription start site region 3415
Tssr3416 11 4261568 to 4261599 31 + TSS region transcription start site region 3416
Tssr100120 11 4264300 to 4264313 13 + TSS region transcription start site region 100120
Tssr100121 11 4265244 to 4265264 20 + TSS region transcription start site region 100121
Cpgi2511 11 4266454 to 4267130 676 CpG island CpG island 2511
Tssr100122 11 4266481 to 4266497 16 + TSS region transcription start site region 100122
Tssr100123 11 4266525 to 4266544 19 + TSS region transcription start site region 100123
Tssr100124 11 4266667 to 4266673 6 + TSS region transcription start site region 100124