Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:4161411-4311433

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sf3a1 11 4160354 to 4182541 22187 + protein coding gene splicing factor 3a, subunit 1
Tssr100099 11 4175054 to 4175078 24 + TSS region transcription start site region 100099
Tssr100100 11 4178112 to 4178140 28 + TSS region transcription start site region 100100
Cpgi2508 11 4186396 to 4187674 1278 CpG island CpG island 2508
Tssr100101 11 4186807 to 4186865 58 + TSS region transcription start site region 100101
Tbc1d10a 11 4186833 to 4215507 28674 + protein coding gene TBC1 domain family, member 10a
Tssr100102 11 4186866 to 4186877 11 + TSS region transcription start site region 100102
D11Dcr2 11 4194818 to 4194911 93 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 2
Cpgi2509 11 4217914 to 4218681 767 CpG island CpG island 2509
Tssr100103 11 4218220 to 4218249 29 + TSS region transcription start site region 100103
Castor1 11 4218225 to 4222409 4184 + protein coding gene cytosolic arginine sensor for mTORC1 subunit 1
Tssr100104 11 4218255 to 4218279 24 + TSS region transcription start site region 100104
Tssr100105 11 4220702 to 4220742 40 + TSS region transcription start site region 100105
Tssr100106 11 4223619 to 4223638 19 + TSS region transcription start site region 100106
Tssr100107 11 4223642 to 4223653 11 + TSS region transcription start site region 100107
Tssr100108 11 4223692 to 4223710 18 + TSS region transcription start site region 100108
Gm11956 11 4230754 to 4231265 511 - pseudogene predicted gene 11956
Tssr106544 11 4231655 to 4231658 3 - TSS region transcription start site region 106544
Tssr106545 11 4232621 to 4232637 16 - TSS region transcription start site region 106545
Tssr100109 11 4232999 to 4233012 13 + TSS region transcription start site region 100109
Tssr3412 11 4233053 to 4233064 11 + TSS region transcription start site region 3412
Tssr100110 11 4236411 to 4236433 22 + TSS region transcription start site region 100110
Tssr100111 11 4236442 to 4236456 14 + TSS region transcription start site region 100111
Tssr106546 11 4236519 to 4236553 34 - TSS region transcription start site region 106546
Tssr3413 11 4236779 to 4236790 11 + TSS region transcription start site region 3413
Osm 11 4236785 to 4241026 4241 + protein coding gene oncostatin M
Tssr100112 11 4236799 to 4236806 7 + TSS region transcription start site region 100112
Tssr100113 11 4236823 to 4236837 14 + TSS region transcription start site region 100113
Tssr100114 11 4236861 to 4236868 7 + TSS region transcription start site region 100114
Tssr3414 11 4236877 to 4236882 5 + TSS region transcription start site region 3414
Tssr106547 11 4237526 to 4237547 21 - TSS region transcription start site region 106547
Cpgi2510 11 4237666 to 4237889 223 CpG island CpG island 2510
Tssr100115 11 4237785 to 4237803 18 + TSS region transcription start site region 100115
Tssr100116 11 4238107 to 4238116 9 + TSS region transcription start site region 100116
Tssr106548 11 4240171 to 4240182 11 - TSS region transcription start site region 106548
D11Mit304 11 4249028 to 4249117 89 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 304
Tssr100117 11 4250629 to 4250636 7 + TSS region transcription start site region 100117
Lif 11 4257568 to 4272514 14946 + protein coding gene leukemia inhibitory factor
Tssr100118 11 4257581 to 4257592 11 + TSS region transcription start site region 100118
Tssr100119 11 4260823 to 4260824 1 + TSS region transcription start site region 100119
Tssr3415 11 4260878 to 4260915 37 + TSS region transcription start site region 3415
Tssr3416 11 4261568 to 4261599 31 + TSS region transcription start site region 3416
Tssr100120 11 4264300 to 4264313 13 + TSS region transcription start site region 100120
Tssr100121 11 4265244 to 4265264 20 + TSS region transcription start site region 100121
Cpgi2511 11 4266454 to 4267130 676 CpG island CpG island 2511
Tssr100122 11 4266481 to 4266497 16 + TSS region transcription start site region 100122
Tssr100123 11 4266525 to 4266544 19 + TSS region transcription start site region 100123
Tssr100124 11 4266667 to 4266673 6 + TSS region transcription start site region 100124
D11Mit16.1 11 4269500 to 4269611 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16.1
D11Mit16 11 4269560 to 4269681 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16
D11Mit16.2 11 4269694 to 4269823 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16.2
D11Mit106 11 4270753 to 4270883 130 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 106
Cpgi2512 11 4271573 to 4271838 265 CpG island CpG island 2512
Gm11959 11 4274089 to 4281931 7842 + lincRNA gene predicted gene 11959
Gm11958 11 4285460 to 4286939 1479 + lincRNA gene predicted gene 11958