Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:40738693-42258727

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nudcd2 11 40733667 to 40740046 6379 + protein coding gene NudC domain containing 2
Ccng1 11 40748552 to 40755311 6759 - protein coding gene cyclin G1
Tssr107486 11 40750346 to 40750398 52 - TSS region transcription start site region 107486
Tssr107487 11 40750403 to 40750432 29 - TSS region transcription start site region 107487
Tssr107488 11 40750693 to 40750707 14 - TSS region transcription start site region 107488
Tssr107489 11 40750708 to 40750728 20 - TSS region transcription start site region 107489
Tssr107490 11 40751042 to 40751055 13 - TSS region transcription start site region 107490
Tssr107491 11 40751338 to 40751351 13 - TSS region transcription start site region 107491
Tssr107492 11 40752322 to 40752355 33 - TSS region transcription start site region 107492
Tssr107493 11 40753889 to 40753921 32 - TSS region transcription start site region 107493
Cpgi2741 11 40754786 to 40755500 714 CpG island CpG island 2741
Tssr107494 11 40755176 to 40755187 11 - TSS region transcription start site region 107494
Tssr107495 11 40755201 to 40755288 87 - TSS region transcription start site region 107495
Tssr107496 11 40755445 to 40755464 19 - TSS region transcription start site region 107496
Tssr100968 11 40755445 to 40755466 21 + TSS region transcription start site region 100968
Tssr107497 11 40755475 to 40755486 11 - TSS region transcription start site region 107497
Tssr100969 11 40755476 to 40755501 25 + TSS region transcription start site region 100969
D11Mit267 11 40826851 to 40826965 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 267
D11Mit268 11 40885736 to 40885873 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 268
Gm24446 11 41034968 to 41035123 155 - snRNA gene predicted gene, 24446
Hmgb1-ps1 11 41141763 to 41142396 633 + pseudogene high mobility group box 1, pseudogene 1
Platr13 11 41218837 to 41221096 2259 + lincRNA gene pluripotency associated transcript 13
D11Mit136 11 41228839 to 41229034 195 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 136
Gm18477 11 41230594 to 41231099 505 - pseudogene predicted gene, 18477
Gm12140 11 41378078 to 41378621 543 + pseudogene predicted gene 12140
Tssr100970 11 41498673 to 41498687 14 + TSS region transcription start site region 100970
Tssr100971 11 41498693 to 41498727 34 + TSS region transcription start site region 100971
Hspd1-ps3 11 41498737 to 41500458 1721 + pseudogene heat shock protein 1 (chaperonin), pseudogene 3
Tssr100972 11 41499136 to 41499140 4 + TSS region transcription start site region 100972
Tssr100973 11 41591010 to 41591015 5 + TSS region transcription start site region 100973
Gm12142 11 41591122 to 41592034 912 + pseudogene predicted gene 12142
A230004M16Rik 11 41710344 to 41968788 258444 + lncRNA gene RIKEN cDNA A230004M16 gene
Gm12143 11 41789488 to 41789819 331 - pseudogene predicted gene 12143
Gabrg2 11 41910190 to 42000840 90650 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
Tssr107498 11 42000268 to 42000279 11 - TSS region transcription start site region 107498
Tssr107499 11 42000284 to 42000342 58 - TSS region transcription start site region 107499
Tssr107500 11 42000472 to 42000481 9 - TSS region transcription start site region 107500
Tssr107501 11 42000538 to 42000592 54 - TSS region transcription start site region 107501
Tssr107502 11 42000669 to 42000676 7 - TSS region transcription start site region 107502
Tssr107503 11 42000782 to 42000801 19 - TSS region transcription start site region 107503
Tssr107504 11 42000834 to 42000867 33 - TSS region transcription start site region 107504
Tssr107505 11 42000869 to 42000887 18 - TSS region transcription start site region 107505
Gabra1 11 42130939 to 42182930 51991 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
Tssr107506 11 42133492 to 42133531 39 - TSS region transcription start site region 107506
Tssr107507 11 42133684 to 42133711 27 - TSS region transcription start site region 107507
Tssr107508 11 42179654 to 42179683 29 - TSS region transcription start site region 107508
Tssr107509 11 42179690 to 42179725 35 - TSS region transcription start site region 107509
9630003H22Rik 11 42180973 to 42181877 904 unclassified gene RIKEN cDNA 9630003H22 gene
Cpgi2742 11 42181985 to 42182613 628 CpG island CpG island 2742
Tssr107510 11 42182093 to 42182104 11 - TSS region transcription start site region 107510
Tssr107511 11 42182207 to 42182222 15 - TSS region transcription start site region 107511
Tssr107512 11 42182239 to 42182281 42 - TSS region transcription start site region 107512
Tssr107513 11 42182307 to 42182333 26 - TSS region transcription start site region 107513
Tssr107514 11 42182339 to 42182350 11 - TSS region transcription start site region 107514
Tssr107515 11 42182389 to 42182437 48 - TSS region transcription start site region 107515
Tssr107516 11 42182441 to 42182442 1 - TSS region transcription start site region 107516
Tssr107517 11 42182447 to 42182466 19 - TSS region transcription start site region 107517
Tssr107518 11 42182513 to 42182520 7 - TSS region transcription start site region 107518
Tssr107519 11 42182530 to 42182539 9 - TSS region transcription start site region 107519
Tssr107520 11 42182858 to 42182882 24 - TSS region transcription start site region 107520
Tssr107521 11 42182924 to 42182935 11 - TSS region transcription start site region 107521