Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:40645190-43265840

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm12138 11 40672906 to 40673856 950 - pseudogene predicted gene 12138
Tssr3468 11 40673889 to 40673898 9 - TSS region transcription start site region 3468
Mat2b 11 40679314 to 40695203 15889 - protein coding gene methionine adenosyltransferase II, beta
Tssr107474 11 40680158 to 40680168 10 - TSS region transcription start site region 107474
Tssr107475 11 40684963 to 40684967 4 - TSS region transcription start site region 107475
Cpgi2738 11 40692112 to 40692841 729 CpG island CpG island 2738
Tssr107476 11 40692579 to 40692664 85 - TSS region transcription start site region 107476
Tssr107477 11 40692666 to 40692679 13 - TSS region transcription start site region 107477
Tssr100960 11 40692774 to 40692802 28 + TSS region transcription start site region 100960
Cpgi2739 11 40694694 to 40695049 355 CpG island CpG island 2739
Tssr107478 11 40694838 to 40694849 11 - TSS region transcription start site region 107478
Tssr107479 11 40694867 to 40694923 56 - TSS region transcription start site region 107479
Tssr107480 11 40694928 to 40694948 20 - TSS region transcription start site region 107480
Tssr107481 11 40694950 to 40694983 33 - TSS region transcription start site region 107481
Tssr107482 11 40694989 to 40695041 52 - TSS region transcription start site region 107482
Tssr107483 11 40695206 to 40695223 17 - TSS region transcription start site region 107483
Hmmr 11 40701395 to 40733422 32027 - protein coding gene hyaluronan mediated motility receptor (RHAMM)
Cpgi2740 11 40733121 to 40734265 1144 CpG island CpG island 2740
Tssr107484 11 40733373 to 40733442 69 - TSS region transcription start site region 107484
Tssr100961 11 40733622 to 40733631 9 + TSS region transcription start site region 100961
Tssr100962 11 40733639 to 40733703 64 + TSS region transcription start site region 100962
Nudcd2 11 40733667 to 40740046 6379 + protein coding gene NudC domain containing 2
Tssr100963 11 40733727 to 40733762 35 + TSS region transcription start site region 100963
Tssr100964 11 40733877 to 40733931 54 + TSS region transcription start site region 100964
Tssr100965 11 40733936 to 40733947 11 + TSS region transcription start site region 100965
Tssr100966 11 40734093 to 40734157 64 + TSS region transcription start site region 100966
Tssr100967 11 40734171 to 40734191 20 + TSS region transcription start site region 100967
Tssr107485 11 40737337 to 40737348 11 - TSS region transcription start site region 107485
Ccng1 11 40748552 to 40755311 6759 - protein coding gene cyclin G1
Tssr107486 11 40750346 to 40750398 52 - TSS region transcription start site region 107486
Tssr107487 11 40750403 to 40750432 29 - TSS region transcription start site region 107487
Tssr107488 11 40750693 to 40750707 14 - TSS region transcription start site region 107488
Tssr107489 11 40750708 to 40750728 20 - TSS region transcription start site region 107489
Tssr107490 11 40751042 to 40751055 13 - TSS region transcription start site region 107490
Tssr107491 11 40751338 to 40751351 13 - TSS region transcription start site region 107491
Tssr107492 11 40752322 to 40752355 33 - TSS region transcription start site region 107492
Tssr107493 11 40753889 to 40753921 32 - TSS region transcription start site region 107493
Cpgi2741 11 40754786 to 40755500 714 CpG island CpG island 2741
Tssr107494 11 40755176 to 40755187 11 - TSS region transcription start site region 107494
Tssr107495 11 40755201 to 40755288 87 - TSS region transcription start site region 107495
Tssr107496 11 40755445 to 40755464 19 - TSS region transcription start site region 107496
Tssr100968 11 40755445 to 40755466 21 + TSS region transcription start site region 100968
Tssr107497 11 40755475 to 40755486 11 - TSS region transcription start site region 107497
Tssr100969 11 40755476 to 40755501 25 + TSS region transcription start site region 100969
D11Mit267 11 40826851 to 40826965 114 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 267
D11Mit268 11 40885736 to 40885873 137 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 268
Gm24446 11 41034968 to 41035123 155 - snRNA gene predicted gene, 24446
Hmgb1-ps1 11 41141763 to 41142396 633 + pseudogene high mobility group box 1, pseudogene 1
Platr13 11 41218837 to 41221096 2259 + lincRNA gene pluripotency associated transcript 13
D11Mit136 11 41228839 to 41229034 195 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 136
Gm18477 11 41230594 to 41231099 505 - pseudogene predicted gene, 18477
Gm12140 11 41378078 to 41378621 543 + pseudogene predicted gene 12140
Tssr100970 11 41498673 to 41498687 14 + TSS region transcription start site region 100970
Tssr100971 11 41498693 to 41498727 34 + TSS region transcription start site region 100971
Hspd1-ps3 11 41498737 to 41500458 1721 + pseudogene heat shock protein 1 (chaperonin), pseudogene 3
Tssr100972 11 41499136 to 41499140 4 + TSS region transcription start site region 100972
Tssr100973 11 41591010 to 41591015 5 + TSS region transcription start site region 100973
Gm12142 11 41591122 to 41592034 912 + pseudogene predicted gene 12142
A230004M16Rik 11 41710344 to 41968788 258444 + lncRNA gene RIKEN cDNA A230004M16 gene
Gm12143 11 41789488 to 41789819 331 - pseudogene predicted gene 12143
Gabrg2 11 41910190 to 42000840 90650 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2
Tssr107498 11 42000268 to 42000279 11 - TSS region transcription start site region 107498
Tssr107499 11 42000284 to 42000342 58 - TSS region transcription start site region 107499
Tssr107500 11 42000472 to 42000481 9 - TSS region transcription start site region 107500
Tssr107501 11 42000538 to 42000592 54 - TSS region transcription start site region 107501
Tssr107502 11 42000669 to 42000676 7 - TSS region transcription start site region 107502
Tssr107503 11 42000782 to 42000801 19 - TSS region transcription start site region 107503
Tssr107504 11 42000834 to 42000867 33 - TSS region transcription start site region 107504
Tssr107505 11 42000869 to 42000887 18 - TSS region transcription start site region 107505
Gabra1 11 42130939 to 42182930 51991 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1
Tssr107506 11 42133492 to 42133531 39 - TSS region transcription start site region 107506
Tssr107507 11 42133684 to 42133711 27 - TSS region transcription start site region 107507
Tssr107508 11 42179654 to 42179683 29 - TSS region transcription start site region 107508
Tssr107509 11 42179690 to 42179725 35 - TSS region transcription start site region 107509
9630003H22Rik 11 42180973 to 42181877 904 unclassified gene RIKEN cDNA 9630003H22 gene
Cpgi2742 11 42181985 to 42182613 628 CpG island CpG island 2742
Tssr107510 11 42182093 to 42182104 11 - TSS region transcription start site region 107510
Tssr107511 11 42182207 to 42182222 15 - TSS region transcription start site region 107511
Tssr107512 11 42182239 to 42182281 42 - TSS region transcription start site region 107512
Tssr107513 11 42182307 to 42182333 26 - TSS region transcription start site region 107513
Tssr107514 11 42182339 to 42182350 11 - TSS region transcription start site region 107514
Tssr107515 11 42182389 to 42182437 48 - TSS region transcription start site region 107515
Tssr107516 11 42182441 to 42182442 1 - TSS region transcription start site region 107516
Tssr107517 11 42182447 to 42182466 19 - TSS region transcription start site region 107517
Tssr107518 11 42182513 to 42182520 7 - TSS region transcription start site region 107518
Tssr107519 11 42182530 to 42182539 9 - TSS region transcription start site region 107519
Tssr107520 11 42182858 to 42182882 24 - TSS region transcription start site region 107520
Tssr107521 11 42182924 to 42182935 11 - TSS region transcription start site region 107521
Gabra6 11 42306437 to 42321072 14635 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6
Tssr107522 11 42321017 to 42321039 22 - TSS region transcription start site region 107522
Tssr107523 11 42321045 to 42321056 11 - TSS region transcription start site region 107523
Tssr107524 11 42321058 to 42321072 14 - TSS region transcription start site region 107524
Tssr107525 11 42321074 to 42321083 9 - TSS region transcription start site region 107525
Gm34591 11 42411499 to 42421222 9723 - lncRNA gene predicted gene, 34591
Cpgi2743 11 42418498 to 42418853 355 CpG island CpG island 2743
Tssr100974 11 42419701 to 42419719 18 + TSS region transcription start site region 100974
Tssr100975 11 42419729 to 42419785 56 + TSS region transcription start site region 100975
Gabrb2 11 42419757 to 42629028 209271 + protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit beta 2
Cpgi2744 11 42419827 to 42420503 676 CpG island CpG island 2744
Tssr100976 11 42419937 to 42419955 18 + TSS region transcription start site region 100976
Tssr100977 11 42420437 to 42420443 6 + TSS region transcription start site region 100977
Tssr100978 11 42420758 to 42420779 21 + TSS region transcription start site region 100978
Tssr100979 11 42420829 to 42420855 26 + TSS region transcription start site region 100979
Tssr100980 11 42421233 to 42421240 7 + TSS region transcription start site region 100980
Tssr100981 11 42421258 to 42421284 26 + TSS region transcription start site region 100981
Tssr100982 11 42421285 to 42421321 36 + TSS region transcription start site region 100982
Tssr100983 11 42421322 to 42421333 11 + TSS region transcription start site region 100983
D11Mit308 11 42465288 to 42465389 101 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 308
Tssr100984 11 42466996 to 42466999 3 + TSS region transcription start site region 100984
D11Mit174 11 42593949 to 42594095 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 174
Tssr100985 11 42630435 to 42630439 4 + TSS region transcription start site region 100985
D11Mit269 11 42757501 to 42757625 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 269
D11Mit347 11 42834683 to 42834876 193 DNA segment DNA Segment, Chr 11 Massachusetts Institute of Technology 347
Gm34644 11 42864015 to 42873546 9531 - lncRNA gene predicted gene, 34644
D11Mit296 11 42881799 to 42881914 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 296
Vmbic10 11 42881799 to 54190238 11308439 QTL ventral midbrain iron content 10
Hbnr13 11 42881799 to 42881914 115 QTL Heligmosomoides bakeri nematode resistance 13
Gm25543 11 42897495 to 42897806 311 + unclassified non-coding RNA gene predicted gene, 25543
Tssr100986 11 42939630 to 42939634 4 + TSS region transcription start site region 100986
D11Mit367 11 42950879 to 42951041 162 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-367
Tssr100987 11 43012164 to 43012187 23 + TSS region transcription start site region 100987
Gm9972 11 43035746 to 43037278 1532 + protein coding gene predicted gene 9972
Tssr100988 11 43068412 to 43068418 6 + TSS region transcription start site region 100988
Gm12145 11 43106140 to 43116294 10154 - lincRNA gene predicted gene 12145
Atp10b 11 43149877 to 43262285 112408 + protein coding gene ATPase, class V, type 10B
D11Mit1001 11 43153557 to 43153667 110 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1001
Tssr100989 11 43155648 to 43155704 56 + TSS region transcription start site region 100989
Tssr100990 11 43155706 to 43155718 12 + TSS region transcription start site region 100990
Tssr100991 11 43155781 to 43155784 3 + TSS region transcription start site region 100991
Tssr107526 11 43157805 to 43157822 17 - TSS region transcription start site region 107526
Gm12146 11 43197522 to 43222142 24620 - antisense lncRNA gene predicted gene 12146
D11Mit234 11 43199453 to 43199568 115 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 234
Gm12144 11 43229563 to 43232264 2701 - antisense lncRNA gene predicted gene 12144
Tssr107527 11 43232262 to 43232279 17 - TSS region transcription start site region 107527
Gm12147 11 43259791 to 43311088 51297 - antisense lncRNA gene predicted gene 12147