Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3987349-4167353

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gal3st1 11 3983636 to 3999326 15690 + protein coding gene galactose-3-O-sulfotransferase 1
Gm46265 11 3985165 to 3988759 3594 + lncRNA gene predicted gene, 46265
Tssr100079 11 3989924 to 3989946 22 + TSS region transcription start site region 100079
Tssr100080 11 3992489 to 3992524 35 + TSS region transcription start site region 100080
Cpgi2501 11 3997847 to 3999163 1316 CpG island CpG island 2501
Lgth12 11 4000000 to 95000000 91000000 QTL body length 12
Wght10 11 4000000 to 89000000 85000000 QTL weight 10
Gm11954 11 4002457 to 4002805 348 + pseudogene predicted gene 11954
Tssr100081 11 4031457 to 4031498 41 + TSS region transcription start site region 100081
Sec14l4 11 4031462 to 4048024 16562 + protein coding gene SEC14-like lipid binding 4
Tssr100082 11 4031606 to 4031614 8 + TSS region transcription start site region 100082
Tssr100083 11 4031770 to 4031833 63 + TSS region transcription start site region 100083
Cpgi2502 11 4031921 to 4032181 260 CpG island CpG island 2502
Tssr100084 11 4035068 to 4035101 33 + TSS region transcription start site region 100084
Tssr100085 11 4046318 to 4046319 1 + TSS region transcription start site region 100085
Tssr100086 11 4048621 to 4048633 12 + TSS region transcription start site region 100086
Sec14l3 11 4064841 to 4077736 12895 + protein coding gene SEC14-like lipid binding 3
Tssr100087 11 4064881 to 4064898 17 + TSS region transcription start site region 100087
Tssr100088 11 4064909 to 4064927 18 + TSS region transcription start site region 100088
Tssr100089 11 4069926 to 4069968 42 + TSS region transcription start site region 100089
Tssr100090 11 4077117 to 4077131 14 + TSS region transcription start site region 100090
Tssr100091 11 4077349 to 4077353 4 + TSS region transcription start site region 100091
Mtfp1 11 4091481 to 4095431 3950 - protein coding gene mitochondrial fission process 1
Cpgi2503 11 4094757 to 4095528 771 CpG island CpG island 2503
Tssr106530 11 4095313 to 4095318 5 - TSS region transcription start site region 106530
Tssr106531 11 4095333 to 4095336 3 - TSS region transcription start site region 106531
Tssr106532 11 4095344 to 4095440 96 - TSS region transcription start site region 106532
Cpgi2504 11 4096428 to 4097051 623 CpG island CpG island 2504
Tssr100092 11 4096853 to 4096905 52 + TSS region transcription start site region 100092
Sec14l2 11 4097039 to 4118729 21690 - protein coding gene SEC14-like lipid binding 2
Tssr106533 11 4103797 to 4103801 4 - TSS region transcription start site region 106533
Tssr106534 11 4104813 to 4104824 11 - TSS region transcription start site region 106534
Gm11955 11 4107755 to 4108224 469 + pseudogene predicted gene 11955
Tssr106535 11 4116711 to 4116744 33 - TSS region transcription start site region 106535
Cpgi2505 11 4118300 to 4119167 867 CpG island CpG island 2505
Tssr106536 11 4118698 to 4118705 7 - TSS region transcription start site region 106536
Tssr106537 11 4118723 to 4118769 46 - TSS region transcription start site region 106537
Tssr106538 11 4118778 to 4118790 12 - TSS region transcription start site region 106538
Tssr100093 11 4121487 to 4121499 12 + TSS region transcription start site region 100093
Tssr106539 11 4123414 to 4123424 10 - TSS region transcription start site region 106539
Gm11957 11 4129372 to 4130150 778 - pseudogene predicted gene 11957
Cpgi2506 11 4134687 to 4135983 1296 CpG island CpG island 2506
Tssr100094 11 4135167 to 4135222 55 + TSS region transcription start site region 100094
Rnf215 11 4135202 to 4141172 5970 + protein coding gene ring finger protein 215
Tssr100095 11 4135233 to 4135246 13 + TSS region transcription start site region 100095
Tssr106540 11 4135354 to 4135357 3 - TSS region transcription start site region 106540
Mir3060 11 4139364 to 4139446 82 + miRNA gene microRNA 3060
Ccdc157 11 4141123 to 4160293 19170 - protein coding gene coiled-coil domain containing 157
Cpgi2507 11 4160077 to 4160740 663 CpG island CpG island 2507
Tssr106541 11 4160218 to 4160231 13 - TSS region transcription start site region 106541
Tssr106542 11 4160232 to 4160282 50 - TSS region transcription start site region 106542
Tssr106543 11 4160286 to 4160305 19 - TSS region transcription start site region 106543
Tssr100096 11 4160348 to 4160404 56 + TSS region transcription start site region 100096
Sf3a1 11 4160354 to 4182541 22187 + protein coding gene splicing factor 3a, subunit 1
Tssr3411 11 4160425 to 4160427 2 + TSS region transcription start site region 3411
Tssr100097 11 4160508 to 4160518 10 + TSS region transcription start site region 100097
Tssr100098 11 4161094 to 4161119 25 + TSS region transcription start site region 100098