Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3975068-4095101

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930556J24Rik 11 3937541 to 3976778 39237 - protein coding gene RIKEN cDNA 4930556J24 gene
Pes1 11 3963975 to 3980004 16029 + protein coding gene pescadillo ribosomal biogenesis factor 1
Tssr106527 11 3983308 to 3983318 10 - TSS region transcription start site region 106527
Cpgi2500 11 3983413 to 3984209 796 CpG island CpG island 2500
Gal3st1 11 3983636 to 3999326 15690 + protein coding gene galactose-3-O-sulfotransferase 1
Tssr100076 11 3983640 to 3983695 55 + TSS region transcription start site region 100076
Tssr100077 11 3983704 to 3983737 33 + TSS region transcription start site region 100077
Tssr100078 11 3983740 to 3983758 18 + TSS region transcription start site region 100078
Tssr106528 11 3983973 to 3983985 12 - TSS region transcription start site region 106528
Tssr106529 11 3983987 to 3983999 12 - TSS region transcription start site region 106529
Gm46265 11 3985165 to 3988759 3594 + lncRNA gene predicted gene, 46265
Tssr100079 11 3989924 to 3989946 22 + TSS region transcription start site region 100079
Tssr100080 11 3992489 to 3992524 35 + TSS region transcription start site region 100080
Cpgi2501 11 3997847 to 3999163 1316 CpG island CpG island 2501
Wght10 11 4000000 to 89000000 85000000 QTL weight 10
Lgth12 11 4000000 to 95000000 91000000 QTL body length 12
Gm11954 11 4002457 to 4002805 348 + pseudogene predicted gene 11954
Tssr100081 11 4031457 to 4031498 41 + TSS region transcription start site region 100081
Sec14l4 11 4031462 to 4048024 16562 + protein coding gene SEC14-like lipid binding 4
Tssr100082 11 4031606 to 4031614 8 + TSS region transcription start site region 100082
Tssr100083 11 4031770 to 4031833 63 + TSS region transcription start site region 100083
Cpgi2502 11 4031921 to 4032181 260 CpG island CpG island 2502
Tssr100084 11 4035068 to 4035101 33 + TSS region transcription start site region 100084
Tssr100085 11 4046318 to 4046319 1 + TSS region transcription start site region 100085
Tssr100086 11 4048621 to 4048633 12 + TSS region transcription start site region 100086
Sec14l3 11 4064841 to 4077736 12895 + protein coding gene SEC14-like lipid binding 3
Tssr100087 11 4064881 to 4064898 17 + TSS region transcription start site region 100087
Tssr100088 11 4064909 to 4064927 18 + TSS region transcription start site region 100088
Tssr100089 11 4069926 to 4069968 42 + TSS region transcription start site region 100089
Tssr100090 11 4077117 to 4077131 14 + TSS region transcription start site region 100090
Tssr100091 11 4077349 to 4077353 4 + TSS region transcription start site region 100091
Mtfp1 11 4091481 to 4095431 3950 - protein coding gene mitochondrial fission process 1
Cpgi2503 11 4094757 to 4095528 771 CpG island CpG island 2503