Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3941123-4360293

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
4930556J24Rik 11 3937541 to 3976778 39237 - protein coding gene RIKEN cDNA 4930556J24 gene
Gm11953 11 3951714 to 3952716 1002 + pseudogene predicted gene 11953
Tssr100072 11 3963951 to 3963964 13 + TSS region transcription start site region 100072
Tssr100073 11 3963970 to 3963983 13 + TSS region transcription start site region 100073
Pes1 11 3963975 to 3980004 16029 + protein coding gene pescadillo ribosomal biogenesis factor 1
Cpgi2499 11 3963979 to 3964208 229 CpG island CpG island 2499
Tssr100074 11 3963987 to 3964021 34 + TSS region transcription start site region 100074
Tssr100075 11 3967732 to 3967735 3 + TSS region transcription start site region 100075
Tssr106527 11 3983308 to 3983318 10 - TSS region transcription start site region 106527
Cpgi2500 11 3983413 to 3984209 796 CpG island CpG island 2500
Gal3st1 11 3983636 to 3999326 15690 + protein coding gene galactose-3-O-sulfotransferase 1
Tssr100076 11 3983640 to 3983695 55 + TSS region transcription start site region 100076
Tssr100077 11 3983704 to 3983737 33 + TSS region transcription start site region 100077
Tssr100078 11 3983740 to 3983758 18 + TSS region transcription start site region 100078
Tssr106528 11 3983973 to 3983985 12 - TSS region transcription start site region 106528
Tssr106529 11 3983987 to 3983999 12 - TSS region transcription start site region 106529
Gm46265 11 3985165 to 3988759 3594 + lncRNA gene predicted gene, 46265
Tssr100079 11 3989924 to 3989946 22 + TSS region transcription start site region 100079
Tssr100080 11 3992489 to 3992524 35 + TSS region transcription start site region 100080
Cpgi2501 11 3997847 to 3999163 1316 CpG island CpG island 2501
Wght10 11 4000000 to 89000000 85000000 QTL weight 10
Lgth12 11 4000000 to 95000000 91000000 QTL body length 12
Gm11954 11 4002457 to 4002805 348 + pseudogene predicted gene 11954
Tssr100081 11 4031457 to 4031498 41 + TSS region transcription start site region 100081
Sec14l4 11 4031462 to 4048024 16562 + protein coding gene SEC14-like lipid binding 4
Tssr100082 11 4031606 to 4031614 8 + TSS region transcription start site region 100082
Tssr100083 11 4031770 to 4031833 63 + TSS region transcription start site region 100083
Cpgi2502 11 4031921 to 4032181 260 CpG island CpG island 2502
Tssr100084 11 4035068 to 4035101 33 + TSS region transcription start site region 100084
Tssr100085 11 4046318 to 4046319 1 + TSS region transcription start site region 100085
Tssr100086 11 4048621 to 4048633 12 + TSS region transcription start site region 100086
Sec14l3 11 4064841 to 4077736 12895 + protein coding gene SEC14-like lipid binding 3
Tssr100087 11 4064881 to 4064898 17 + TSS region transcription start site region 100087
Tssr100088 11 4064909 to 4064927 18 + TSS region transcription start site region 100088
Tssr100089 11 4069926 to 4069968 42 + TSS region transcription start site region 100089
Tssr100090 11 4077117 to 4077131 14 + TSS region transcription start site region 100090
Tssr100091 11 4077349 to 4077353 4 + TSS region transcription start site region 100091
Mtfp1 11 4091481 to 4095431 3950 - protein coding gene mitochondrial fission process 1
Cpgi2503 11 4094757 to 4095528 771 CpG island CpG island 2503
Tssr106530 11 4095313 to 4095318 5 - TSS region transcription start site region 106530
Tssr106531 11 4095333 to 4095336 3 - TSS region transcription start site region 106531
Tssr106532 11 4095344 to 4095440 96 - TSS region transcription start site region 106532
Cpgi2504 11 4096428 to 4097051 623 CpG island CpG island 2504
Tssr100092 11 4096853 to 4096905 52 + TSS region transcription start site region 100092
Sec14l2 11 4097039 to 4118729 21690 - protein coding gene SEC14-like lipid binding 2
Tssr106533 11 4103797 to 4103801 4 - TSS region transcription start site region 106533
Tssr106534 11 4104813 to 4104824 11 - TSS region transcription start site region 106534
Gm11955 11 4107755 to 4108224 469 + pseudogene predicted gene 11955
Tssr106535 11 4116711 to 4116744 33 - TSS region transcription start site region 106535
Cpgi2505 11 4118300 to 4119167 867 CpG island CpG island 2505
Tssr106536 11 4118698 to 4118705 7 - TSS region transcription start site region 106536
Tssr106537 11 4118723 to 4118769 46 - TSS region transcription start site region 106537
Tssr106538 11 4118778 to 4118790 12 - TSS region transcription start site region 106538
Tssr100093 11 4121487 to 4121499 12 + TSS region transcription start site region 100093
Tssr106539 11 4123414 to 4123424 10 - TSS region transcription start site region 106539
Gm11957 11 4129372 to 4130150 778 - pseudogene predicted gene 11957
Cpgi2506 11 4134687 to 4135983 1296 CpG island CpG island 2506
Tssr100094 11 4135167 to 4135222 55 + TSS region transcription start site region 100094
Rnf215 11 4135202 to 4141172 5970 + protein coding gene ring finger protein 215
Tssr100095 11 4135233 to 4135246 13 + TSS region transcription start site region 100095
Tssr106540 11 4135354 to 4135357 3 - TSS region transcription start site region 106540
Mir3060 11 4139364 to 4139446 82 + miRNA gene microRNA 3060
Ccdc157 11 4141123 to 4160293 19170 - protein coding gene coiled-coil domain containing 157
Cpgi2507 11 4160077 to 4160740 663 CpG island CpG island 2507
Tssr106541 11 4160218 to 4160231 13 - TSS region transcription start site region 106541
Tssr106542 11 4160232 to 4160282 50 - TSS region transcription start site region 106542
Tssr106543 11 4160286 to 4160305 19 - TSS region transcription start site region 106543
Tssr100096 11 4160348 to 4160404 56 + TSS region transcription start site region 100096
Sf3a1 11 4160354 to 4182541 22187 + protein coding gene splicing factor 3a, subunit 1
Tssr3411 11 4160425 to 4160427 2 + TSS region transcription start site region 3411
Tssr100097 11 4160508 to 4160518 10 + TSS region transcription start site region 100097
Tssr100098 11 4161094 to 4161119 25 + TSS region transcription start site region 100098
Tssr100099 11 4175054 to 4175078 24 + TSS region transcription start site region 100099
Tssr100100 11 4178112 to 4178140 28 + TSS region transcription start site region 100100
Cpgi2508 11 4186396 to 4187674 1278 CpG island CpG island 2508
Tssr100101 11 4186807 to 4186865 58 + TSS region transcription start site region 100101
Tbc1d10a 11 4186833 to 4215507 28674 + protein coding gene TBC1 domain family, member 10a
Tssr100102 11 4186866 to 4186877 11 + TSS region transcription start site region 100102
D11Dcr2 11 4194818 to 4194911 93 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 2
Cpgi2509 11 4217914 to 4218681 767 CpG island CpG island 2509
Tssr100103 11 4218220 to 4218249 29 + TSS region transcription start site region 100103
Castor1 11 4218225 to 4222409 4184 + protein coding gene cytosolic arginine sensor for mTORC1 subunit 1
Tssr100104 11 4218255 to 4218279 24 + TSS region transcription start site region 100104
Tssr100105 11 4220702 to 4220742 40 + TSS region transcription start site region 100105
Tssr100106 11 4223619 to 4223638 19 + TSS region transcription start site region 100106
Tssr100107 11 4223642 to 4223653 11 + TSS region transcription start site region 100107
Tssr100108 11 4223692 to 4223710 18 + TSS region transcription start site region 100108
Gm11956 11 4230754 to 4231265 511 - pseudogene predicted gene 11956
Tssr106544 11 4231655 to 4231658 3 - TSS region transcription start site region 106544
Tssr106545 11 4232621 to 4232637 16 - TSS region transcription start site region 106545
Tssr100109 11 4232999 to 4233012 13 + TSS region transcription start site region 100109
Tssr3412 11 4233053 to 4233064 11 + TSS region transcription start site region 3412
Tssr100110 11 4236411 to 4236433 22 + TSS region transcription start site region 100110
Tssr100111 11 4236442 to 4236456 14 + TSS region transcription start site region 100111
Tssr106546 11 4236519 to 4236553 34 - TSS region transcription start site region 106546
Tssr3413 11 4236779 to 4236790 11 + TSS region transcription start site region 3413
Osm 11 4236785 to 4241026 4241 + protein coding gene oncostatin M
Tssr100112 11 4236799 to 4236806 7 + TSS region transcription start site region 100112
Tssr100113 11 4236823 to 4236837 14 + TSS region transcription start site region 100113
Tssr100114 11 4236861 to 4236868 7 + TSS region transcription start site region 100114
Tssr3414 11 4236877 to 4236882 5 + TSS region transcription start site region 3414
Tssr106547 11 4237526 to 4237547 21 - TSS region transcription start site region 106547
Cpgi2510 11 4237666 to 4237889 223 CpG island CpG island 2510
Tssr100115 11 4237785 to 4237803 18 + TSS region transcription start site region 100115
Tssr100116 11 4238107 to 4238116 9 + TSS region transcription start site region 100116
Tssr106548 11 4240171 to 4240182 11 - TSS region transcription start site region 106548
D11Mit304 11 4249028 to 4249117 89 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 304
Tssr100117 11 4250629 to 4250636 7 + TSS region transcription start site region 100117
Lif 11 4257568 to 4272514 14946 + protein coding gene leukemia inhibitory factor
Tssr100118 11 4257581 to 4257592 11 + TSS region transcription start site region 100118
Tssr100119 11 4260823 to 4260824 1 + TSS region transcription start site region 100119
Tssr3415 11 4260878 to 4260915 37 + TSS region transcription start site region 3415
Tssr3416 11 4261568 to 4261599 31 + TSS region transcription start site region 3416
Tssr100120 11 4264300 to 4264313 13 + TSS region transcription start site region 100120
Tssr100121 11 4265244 to 4265264 20 + TSS region transcription start site region 100121
Cpgi2511 11 4266454 to 4267130 676 CpG island CpG island 2511
Tssr100122 11 4266481 to 4266497 16 + TSS region transcription start site region 100122
Tssr100123 11 4266525 to 4266544 19 + TSS region transcription start site region 100123
Tssr100124 11 4266667 to 4266673 6 + TSS region transcription start site region 100124
D11Mit16.1 11 4269500 to 4269611 111 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16.1
D11Mit16 11 4269560 to 4269681 121 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16
D11Mit16.2 11 4269694 to 4269823 129 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 16.2
D11Mit106 11 4270753 to 4270883 130 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 106
Cpgi2512 11 4271573 to 4271838 265 CpG island CpG island 2512
Gm11959 11 4274089 to 4281931 7842 + lincRNA gene predicted gene 11959
Gm11958 11 4285460 to 4286939 1479 + lincRNA gene predicted gene 11958
Tssr100125 11 4316156 to 4316168 12 + TSS region transcription start site region 100125
Gm24803 11 4324149 to 4324255 106 - snRNA gene predicted gene, 24803
Hormad2 11 4345814 to 4441105 95291 - protein coding gene HORMA domain containing 2
Tssr106549 11 4346898 to 4346908 10 - TSS region transcription start site region 106549
Tssr106550 11 4346913 to 4346922 9 - TSS region transcription start site region 106550