Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3873621-4223633

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112 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11952 11 3872955 to 3873775 820 + pseudogene predicted gene 11952
4921536K21Rik 11 3886088 to 3895098 9010 - protein coding gene RIKEN cDNA 4921536K21 gene
Cpgi2497 11 3894615 to 3895407 792 CpG island CpG island 2497
Tssr106511 11 3895085 to 3895104 19 - TSS region transcription start site region 106511
Tssr106512 11 3895110 to 3895136 26 - TSS region transcription start site region 106512
Tssr106513 11 3895141 to 3895165 24 - TSS region transcription start site region 106513
Tssr100068 11 3895223 to 3895310 87 + TSS region transcription start site region 100068
Dusp18 11 3895240 to 3901296 6056 + protein coding gene dual specificity phosphatase 18
Tssr100069 11 3895318 to 3895329 11 + TSS region transcription start site region 100069
Slc35e4 11 3907022 to 3914664 7642 - protein coding gene solute carrier family 35, member E4
Cpgi2498 11 3912706 to 3914897 2191 CpG island CpG island 2498
Tssr106514 11 3913717 to 3913728 11 - TSS region transcription start site region 106514
Tssr106515 11 3913746 to 3913757 11 - TSS region transcription start site region 106515
Tssr106516 11 3913769 to 3913792 23 - TSS region transcription start site region 106516
Tssr106517 11 3913795 to 3913893 98 - TSS region transcription start site region 106517
Tssr106518 11 3914137 to 3914149 12 - TSS region transcription start site region 106518
Tcn2 11 3917192 to 3932159 14967 - protein coding gene transcobalamin 2
Tssr106519 11 3923515 to 3923526 11 - TSS region transcription start site region 106519
Tssr100070 11 3923758 to 3923773 15 + TSS region transcription start site region 100070
Tssr100071 11 3925019 to 3925062 43 + TSS region transcription start site region 100071
Tssr106520 11 3927514 to 3927525 11 - TSS region transcription start site region 106520
Tssr106521 11 3931505 to 3931544 39 - TSS region transcription start site region 106521
Tssr106522 11 3931545 to 3931570 25 - TSS region transcription start site region 106522
Tssr106523 11 3931588 to 3931599 11 - TSS region transcription start site region 106523
Tssr106524 11 3931791 to 3931816 25 - TSS region transcription start site region 106524
Tssr106525 11 3931976 to 3931981 5 - TSS region transcription start site region 106525
Tssr106526 11 3931998 to 3932083 85 - TSS region transcription start site region 106526
4930556J24Rik 11 3937541 to 3976778 39237 - protein coding gene RIKEN cDNA 4930556J24 gene
Gm11953 11 3951714 to 3952716 1002 + pseudogene predicted gene 11953
Tssr100072 11 3963951 to 3963964 13 + TSS region transcription start site region 100072
Tssr100073 11 3963970 to 3963983 13 + TSS region transcription start site region 100073
Pes1 11 3963975 to 3980004 16029 + protein coding gene pescadillo ribosomal biogenesis factor 1
Cpgi2499 11 3963979 to 3964208 229 CpG island CpG island 2499
Tssr100074 11 3963987 to 3964021 34 + TSS region transcription start site region 100074
Tssr100075 11 3967732 to 3967735 3 + TSS region transcription start site region 100075
Tssr106527 11 3983308 to 3983318 10 - TSS region transcription start site region 106527
Cpgi2500 11 3983413 to 3984209 796 CpG island CpG island 2500
Gal3st1 11 3983636 to 3999326 15690 + protein coding gene galactose-3-O-sulfotransferase 1
Tssr100076 11 3983640 to 3983695 55 + TSS region transcription start site region 100076
Tssr100077 11 3983704 to 3983737 33 + TSS region transcription start site region 100077
Tssr100078 11 3983740 to 3983758 18 + TSS region transcription start site region 100078
Tssr106528 11 3983973 to 3983985 12 - TSS region transcription start site region 106528
Tssr106529 11 3983987 to 3983999 12 - TSS region transcription start site region 106529
Gm46265 11 3985165 to 3988759 3594 + lncRNA gene predicted gene, 46265
Tssr100079 11 3989924 to 3989946 22 + TSS region transcription start site region 100079
Tssr100080 11 3992489 to 3992524 35 + TSS region transcription start site region 100080
Cpgi2501 11 3997847 to 3999163 1316 CpG island CpG island 2501
Wght10 11 4000000 to 89000000 85000000 QTL weight 10
Lgth12 11 4000000 to 95000000 91000000 QTL body length 12
Gm11954 11 4002457 to 4002805 348 + pseudogene predicted gene 11954
Tssr100081 11 4031457 to 4031498 41 + TSS region transcription start site region 100081
Sec14l4 11 4031462 to 4048024 16562 + protein coding gene SEC14-like lipid binding 4
Tssr100082 11 4031606 to 4031614 8 + TSS region transcription start site region 100082
Tssr100083 11 4031770 to 4031833 63 + TSS region transcription start site region 100083
Cpgi2502 11 4031921 to 4032181 260 CpG island CpG island 2502
Tssr100084 11 4035068 to 4035101 33 + TSS region transcription start site region 100084
Tssr100085 11 4046318 to 4046319 1 + TSS region transcription start site region 100085
Tssr100086 11 4048621 to 4048633 12 + TSS region transcription start site region 100086
Sec14l3 11 4064841 to 4077736 12895 + protein coding gene SEC14-like lipid binding 3
Tssr100087 11 4064881 to 4064898 17 + TSS region transcription start site region 100087
Tssr100088 11 4064909 to 4064927 18 + TSS region transcription start site region 100088
Tssr100089 11 4069926 to 4069968 42 + TSS region transcription start site region 100089
Tssr100090 11 4077117 to 4077131 14 + TSS region transcription start site region 100090
Tssr100091 11 4077349 to 4077353 4 + TSS region transcription start site region 100091
Mtfp1 11 4091481 to 4095431 3950 - protein coding gene mitochondrial fission process 1
Cpgi2503 11 4094757 to 4095528 771 CpG island CpG island 2503
Tssr106530 11 4095313 to 4095318 5 - TSS region transcription start site region 106530
Tssr106531 11 4095333 to 4095336 3 - TSS region transcription start site region 106531
Tssr106532 11 4095344 to 4095440 96 - TSS region transcription start site region 106532
Cpgi2504 11 4096428 to 4097051 623 CpG island CpG island 2504
Tssr100092 11 4096853 to 4096905 52 + TSS region transcription start site region 100092
Sec14l2 11 4097039 to 4118729 21690 - protein coding gene SEC14-like lipid binding 2
Tssr106533 11 4103797 to 4103801 4 - TSS region transcription start site region 106533
Tssr106534 11 4104813 to 4104824 11 - TSS region transcription start site region 106534
Gm11955 11 4107755 to 4108224 469 + pseudogene predicted gene 11955
Tssr106535 11 4116711 to 4116744 33 - TSS region transcription start site region 106535
Cpgi2505 11 4118300 to 4119167 867 CpG island CpG island 2505
Tssr106536 11 4118698 to 4118705 7 - TSS region transcription start site region 106536
Tssr106537 11 4118723 to 4118769 46 - TSS region transcription start site region 106537
Tssr106538 11 4118778 to 4118790 12 - TSS region transcription start site region 106538
Tssr100093 11 4121487 to 4121499 12 + TSS region transcription start site region 100093
Tssr106539 11 4123414 to 4123424 10 - TSS region transcription start site region 106539
Gm11957 11 4129372 to 4130150 778 - pseudogene predicted gene 11957
Cpgi2506 11 4134687 to 4135983 1296 CpG island CpG island 2506
Tssr100094 11 4135167 to 4135222 55 + TSS region transcription start site region 100094
Rnf215 11 4135202 to 4141172 5970 + protein coding gene ring finger protein 215
Tssr100095 11 4135233 to 4135246 13 + TSS region transcription start site region 100095
Tssr106540 11 4135354 to 4135357 3 - TSS region transcription start site region 106540
Mir3060 11 4139364 to 4139446 82 + miRNA gene microRNA 3060
Ccdc157 11 4141123 to 4160293 19170 - protein coding gene coiled-coil domain containing 157
Cpgi2507 11 4160077 to 4160740 663 CpG island CpG island 2507
Tssr106541 11 4160218 to 4160231 13 - TSS region transcription start site region 106541
Tssr106542 11 4160232 to 4160282 50 - TSS region transcription start site region 106542
Tssr106543 11 4160286 to 4160305 19 - TSS region transcription start site region 106543
Tssr100096 11 4160348 to 4160404 56 + TSS region transcription start site region 100096
Sf3a1 11 4160354 to 4182541 22187 + protein coding gene splicing factor 3a, subunit 1
Tssr3411 11 4160425 to 4160427 2 + TSS region transcription start site region 3411
Tssr100097 11 4160508 to 4160518 10 + TSS region transcription start site region 100097
Tssr100098 11 4161094 to 4161119 25 + TSS region transcription start site region 100098
Tssr100099 11 4175054 to 4175078 24 + TSS region transcription start site region 100099
Tssr100100 11 4178112 to 4178140 28 + TSS region transcription start site region 100100
Cpgi2508 11 4186396 to 4187674 1278 CpG island CpG island 2508
Tssr100101 11 4186807 to 4186865 58 + TSS region transcription start site region 100101
Tbc1d10a 11 4186833 to 4215507 28674 + protein coding gene TBC1 domain family, member 10a
Tssr100102 11 4186866 to 4186877 11 + TSS region transcription start site region 100102
D11Dcr2 11 4194818 to 4194911 93 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 2
Cpgi2509 11 4217914 to 4218681 767 CpG island CpG island 2509
Tssr100103 11 4218220 to 4218249 29 + TSS region transcription start site region 100103
Castor1 11 4218225 to 4222409 4184 + protein coding gene cytosolic arginine sensor for mTORC1 subunit 1
Tssr100104 11 4218255 to 4218279 24 + TSS region transcription start site region 100104
Tssr100105 11 4220702 to 4220742 40 + TSS region transcription start site region 100105
Tssr100106 11 4223619 to 4223638 19 + TSS region transcription start site region 100106