Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:35323381-36319506

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slit3 11 35121456 to 35708507 587051 + protein coding gene slit guidance ligand 3
Gm46277 11 35287973 to 35328034 40061 + lncRNA gene predicted gene, 46277
Gm12123 11 35323199 to 35323670 471 - pseudogene predicted gene 12123
Gm12122 11 35350069 to 35350785 716 + sense intronic lncRNA gene predicted gene 12122
Tssr100937 11 35459531 to 35459535 4 + TSS region transcription start site region 100937
Gm39705 11 35539778 to 35544722 4944 - lncRNA gene predicted gene, 39705
Tssr100938 11 35544484 to 35544495 11 + TSS region transcription start site region 100938
Tssr100939 11 35544504 to 35544520 16 + TSS region transcription start site region 100939
Tssr100940 11 35544522 to 35544565 43 + TSS region transcription start site region 100940
Tssr100941 11 35558755 to 35558756 1 + TSS region transcription start site region 100941
Mir218-2 11 35616816 to 35616925 109 + miRNA gene microRNA 218-2
Gm46278 11 35651420 to 35678232 26812 - lncRNA gene predicted gene, 46278
D11Mit231.2 11 35687641 to 35687792 151 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 231.2
D11Mit231 11 35687789 to 35687889 100 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 231
Alcw9 11 35687789 to 44175104 8487315 QTL alcohol withdrawal 9
Bulb3 11 35687789 to 35687889 100 QTL bulb size 3
Char8 11 35687789 to 69794161 34106372 QTL P. chabaudi malaria resistance QTL 8
D11Dcr6 11 35687789 to 35687889 100 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 6
Leuf1 11 35687789 to 35687889 100 QTL leukocyte filtration 1
Pbw3 11 35687789 to 44175104 8487315 QTL pentobarbital withdrawal QTL 3
Zolw1 11 35687789 to 44175104 8487315 QTL zolpidem withdrawal 1
Intmrm2 11 35687789 to 35687889 100 QTL intima/media ratio modifier 2
Intim2 11 35687789 to 35687889 100 QTL intima modifier 2
Tssr100942 11 35707703 to 35707722 19 + TSS region transcription start site region 100942
Cpgi2726 11 35707915 to 35708173 258 CpG island CpG island 2726
Cpgi2727 11 35751253 to 35751501 248 CpG island CpG island 2727
Tssr100943 11 35768794 to 35768798 4 + TSS region transcription start site region 100943
Cpgi2728 11 35769194 to 35770252 1058 CpG island CpG island 2728
Tssr100944 11 35769374 to 35769404 30 + TSS region transcription start site region 100944
Tssr100945 11 35769462 to 35769475 13 + TSS region transcription start site region 100945
Pank3 11 35769495 to 35791285 21790 + protein coding gene pantothenate kinase 3
Tssr100946 11 35769574 to 35769616 42 + TSS region transcription start site region 100946
Tssr100947 11 35769621 to 35769652 31 + TSS region transcription start site region 100947
Tssr100948 11 35769807 to 35769819 12 + TSS region transcription start site region 100948
Tssr100949 11 35769820 to 35769869 49 + TSS region transcription start site region 100949
Mir103-1 11 35782396 to 35782481 85 + miRNA gene microRNA 103-1
Tssr100950 11 35784072 to 35784075 3 + TSS region transcription start site region 100950
Gm12124 11 35792781 to 35793459 678 + pseudogene predicted gene 12124
Fbll1 11 35797382 to 35798884 1502 - protein coding gene fibrillarin-like 1
Cpgi2729 11 35797417 to 35798829 1412 CpG island CpG island 2729
Tssr107403 11 35798536 to 35798612 76 - TSS region transcription start site region 107403
Rars 11 35808381 to 35834506 26125 - protein coding gene arginyl-tRNA synthetase
Tssr107404 11 35817438 to 35817446 8 - TSS region transcription start site region 107404
Tssr107405 11 35828248 to 35828256 8 - TSS region transcription start site region 107405
Tssr107406 11 35828691 to 35828716 25 - TSS region transcription start site region 107406
Tssr107407 11 35833261 to 35833307 46 - TSS region transcription start site region 107407
Cpgi2730 11 35834184 to 35834744 560 CpG island CpG island 2730
Tssr3462 11 35834374 to 35834382 8 - TSS region transcription start site region 3462
Tssr3463 11 35834457 to 35834476 19 - TSS region transcription start site region 3463
Tssr107408 11 35834492 to 35834509 17 - TSS region transcription start site region 107408
Tssr107409 11 35834518 to 35834530 12 - TSS region transcription start site region 107409
Tssr107410 11 35836027 to 35836028 1 - TSS region transcription start site region 107410
Cpgi2731 11 35838437 to 35838690 253 CpG island CpG island 2731
Tssr100951 11 35838613 to 35838629 16 + TSS region transcription start site region 100951
Wwc1 11 35839178 to 35980089 140911 - protein coding gene WW, C2 and coiled-coil domain containing 1
Tssr107411 11 35840450 to 35840479 29 - TSS region transcription start site region 107411
Tssr107412 11 35841939 to 35841991 52 - TSS region transcription start site region 107412
Tssr107413 11 35842243 to 35842264 21 - TSS region transcription start site region 107413
Tssr107414 11 35844401 to 35844420 19 - TSS region transcription start site region 107414
Tssr107415 11 35879469 to 35879474 5 - TSS region transcription start site region 107415
Tssr100952 11 35889111 to 35889118 7 + TSS region transcription start site region 100952
Tssr107416 11 35915573 to 35915582 9 - TSS region transcription start site region 107416
Tssr107417 11 35915593 to 35915604 11 - TSS region transcription start site region 107417
Tssr100953 11 35945510 to 35945516 6 + TSS region transcription start site region 100953
Cpgi2732 11 35979673 to 35980904 1231 CpG island CpG island 2732
Tssr107418 11 35980442 to 35980456 14 - TSS region transcription start site region 107418
Tssr107419 11 35980473 to 35980579 106 - TSS region transcription start site region 107419
Tssr107420 11 35980591 to 35980608 17 - TSS region transcription start site region 107420
Cpgi2733 11 35985896 to 35986117 221 CpG island CpG island 2733
Gm12125 11 35996054 to 35996789 735 + pseudogene predicted gene 12125
Gm42072 11 35997854 to 36016418 18564 + lncRNA gene predicted gene, 42072
Bmiq10 11 36000000 to 85000000 49000000 QTL body mass index QTL 10
Cpgi2734 11 36001288 to 36001885 597 CpG island CpG island 2734
Tenm2 11 36006656 to 37235964 1229308 - protein coding gene teneurin transmembrane protein 2
Tssr107421 11 36007712 to 36007726 14 - TSS region transcription start site region 107421
Tssr107422 11 36007861 to 36007873 12 - TSS region transcription start site region 107422
Cpgi2735 11 36008100 to 36008603 503 CpG island CpG island 2735
D11Mit108 11 36041780 to 36041929 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 108
Tssr3464 11 36053020 to 36053021 1 + TSS region transcription start site region 3464
Gm12126 11 36080664 to 36083854 3190 + antisense lncRNA gene predicted gene 12126
Gm42071 11 36103561 to 36106062 2501 + lncRNA gene predicted gene, 42071
Tssr107423 11 36169061 to 36169065 4 - TSS region transcription start site region 107423
Gm46251 11 36169605 to 36177302 7697 + lncRNA gene predicted gene, 46251
Tssr107424 11 36181450 to 36181455 5 - TSS region transcription start site region 107424
Tssr107425 11 36271867 to 36271869 2 - TSS region transcription start site region 107425
Gm12127 11 36278041 to 36279987 1946 + antisense lncRNA gene predicted gene 12127
Tssr107426 11 36307423 to 36307426 3 - TSS region transcription start site region 107426