Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:35227789-44635104

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480 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eae44 11 12318637 to 40060013 27741376 QTL experimental allergic encephalomyelitis susceptibility 44
Tnbs2 11 24948052 to 35235853 10287801 QTL tri-nitrobenzene sulfonic acid susceptible 2
Bbaa7 11 26061780 to 44373868 18312088 QTL B.burgdorferi-associated arthritis 7
Slit3 11 35121456 to 35708507 587051 + protein coding gene slit guidance ligand 3
D11Mit186 11 35235729 to 35235853 124 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 186
Gm46277 11 35287973 to 35328034 40061 + lncRNA gene predicted gene, 46277
Gm12123 11 35323199 to 35323670 471 - pseudogene predicted gene 12123
Gm12122 11 35350069 to 35350785 716 + sense intronic lncRNA gene predicted gene 12122
Tssr100937 11 35459531 to 35459535 4 + TSS region transcription start site region 100937
Gm39705 11 35539778 to 35544722 4944 - lncRNA gene predicted gene, 39705
Tssr100938 11 35544484 to 35544495 11 + TSS region transcription start site region 100938
Tssr100939 11 35544504 to 35544520 16 + TSS region transcription start site region 100939
Tssr100940 11 35544522 to 35544565 43 + TSS region transcription start site region 100940
Tssr100941 11 35558755 to 35558756 1 + TSS region transcription start site region 100941
Mir218-2 11 35616816 to 35616925 109 + miRNA gene microRNA 218-2
Gm46278 11 35651420 to 35678232 26812 - lncRNA gene predicted gene, 46278
D11Mit231.2 11 35687641 to 35687792 151 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 231.2
Bulb3 11 35687789 to 35687889 100 QTL bulb size 3
D11Mit231 11 35687789 to 35687889 100 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 231
Leuf1 11 35687789 to 35687889 100 QTL leukocyte filtration 1
D11Dcr6 11 35687789 to 35687889 100 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 6
Char8 11 35687789 to 69794161 34106372 QTL P. chabaudi malaria resistance QTL 8
Intmrm2 11 35687789 to 35687889 100 QTL intima/media ratio modifier 2
Alcw9 11 35687789 to 44175104 8487315 QTL alcohol withdrawal 9
Intim2 11 35687789 to 35687889 100 QTL intima modifier 2
Zolw1 11 35687789 to 44175104 8487315 QTL zolpidem withdrawal 1
Pbw3 11 35687789 to 44175104 8487315 QTL pentobarbital withdrawal QTL 3
Tssr100942 11 35707703 to 35707722 19 + TSS region transcription start site region 100942
Cpgi2726 11 35707915 to 35708173 258 CpG island CpG island 2726
Cpgi2727 11 35751253 to 35751501 248 CpG island CpG island 2727
Tssr100943 11 35768794 to 35768798 4 + TSS region transcription start site region 100943
Cpgi2728 11 35769194 to 35770252 1058 CpG island CpG island 2728
Tssr100944 11 35769374 to 35769404 30 + TSS region transcription start site region 100944
Tssr100945 11 35769462 to 35769475 13 + TSS region transcription start site region 100945
Pank3 11 35769495 to 35791285 21790 + protein coding gene pantothenate kinase 3
Tssr100946 11 35769574 to 35769616 42 + TSS region transcription start site region 100946
Tssr100947 11 35769621 to 35769652 31 + TSS region transcription start site region 100947
Tssr100948 11 35769807 to 35769819 12 + TSS region transcription start site region 100948
Tssr100949 11 35769820 to 35769869 49 + TSS region transcription start site region 100949
Mir103-1 11 35782396 to 35782481 85 + miRNA gene microRNA 103-1
Tssr100950 11 35784072 to 35784075 3 + TSS region transcription start site region 100950
Gm12124 11 35792781 to 35793459 678 + pseudogene predicted gene 12124
Fbll1 11 35797382 to 35798884 1502 - protein coding gene fibrillarin-like 1
Cpgi2729 11 35797417 to 35798829 1412 CpG island CpG island 2729
Tssr107403 11 35798536 to 35798612 76 - TSS region transcription start site region 107403
Rars 11 35808381 to 35834506 26125 - protein coding gene arginyl-tRNA synthetase
Tssr107404 11 35817438 to 35817446 8 - TSS region transcription start site region 107404
Tssr107405 11 35828248 to 35828256 8 - TSS region transcription start site region 107405
Tssr107406 11 35828691 to 35828716 25 - TSS region transcription start site region 107406
Tssr107407 11 35833261 to 35833307 46 - TSS region transcription start site region 107407
Cpgi2730 11 35834184 to 35834744 560 CpG island CpG island 2730
Tssr3462 11 35834374 to 35834382 8 - TSS region transcription start site region 3462
Tssr3463 11 35834457 to 35834476 19 - TSS region transcription start site region 3463
Tssr107408 11 35834492 to 35834509 17 - TSS region transcription start site region 107408
Tssr107409 11 35834518 to 35834530 12 - TSS region transcription start site region 107409
Tssr107410 11 35836027 to 35836028 1 - TSS region transcription start site region 107410
Cpgi2731 11 35838437 to 35838690 253 CpG island CpG island 2731
Tssr100951 11 35838613 to 35838629 16 + TSS region transcription start site region 100951
Wwc1 11 35839178 to 35980089 140911 - protein coding gene WW, C2 and coiled-coil domain containing 1
Tssr107411 11 35840450 to 35840479 29 - TSS region transcription start site region 107411
Tssr107412 11 35841939 to 35841991 52 - TSS region transcription start site region 107412
Tssr107413 11 35842243 to 35842264 21 - TSS region transcription start site region 107413
Tssr107414 11 35844401 to 35844420 19 - TSS region transcription start site region 107414
Tssr107415 11 35879469 to 35879474 5 - TSS region transcription start site region 107415
Tssr100952 11 35889111 to 35889118 7 + TSS region transcription start site region 100952
Tssr107416 11 35915573 to 35915582 9 - TSS region transcription start site region 107416
Tssr107417 11 35915593 to 35915604 11 - TSS region transcription start site region 107417
Tssr100953 11 35945510 to 35945516 6 + TSS region transcription start site region 100953
Cpgi2732 11 35979673 to 35980904 1231 CpG island CpG island 2732
Tssr107418 11 35980442 to 35980456 14 - TSS region transcription start site region 107418
Tssr107419 11 35980473 to 35980579 106 - TSS region transcription start site region 107419
Tssr107420 11 35980591 to 35980608 17 - TSS region transcription start site region 107420
Cpgi2733 11 35985896 to 35986117 221 CpG island CpG island 2733
Gm12125 11 35996054 to 35996789 735 + pseudogene predicted gene 12125
Gm42072 11 35997854 to 36016418 18564 + lncRNA gene predicted gene, 42072
Bmiq10 11 36000000 to 85000000 49000000 QTL body mass index QTL 10
Cpgi2734 11 36001288 to 36001885 597 CpG island CpG island 2734
Tenm2 11 36006656 to 37235964 1229308 - protein coding gene teneurin transmembrane protein 2
Tssr107421 11 36007712 to 36007726 14 - TSS region transcription start site region 107421
Tssr107422 11 36007861 to 36007873 12 - TSS region transcription start site region 107422
Cpgi2735 11 36008100 to 36008603 503 CpG island CpG island 2735
D11Mit108 11 36041780 to 36041929 149 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 108
Tssr3464 11 36053020 to 36053021 1 + TSS region transcription start site region 3464
Gm12126 11 36080664 to 36083854 3190 + antisense lncRNA gene predicted gene 12126
Gm42071 11 36103561 to 36106062 2501 + lncRNA gene predicted gene, 42071
Tssr107423 11 36169061 to 36169065 4 - TSS region transcription start site region 107423
Gm46251 11 36169605 to 36177302 7697 + lncRNA gene predicted gene, 46251
Tssr107424 11 36181450 to 36181455 5 - TSS region transcription start site region 107424
Tssr107425 11 36271867 to 36271869 2 - TSS region transcription start site region 107425
Gm12127 11 36278041 to 36279987 1946 + antisense lncRNA gene predicted gene 12127
Tssr107426 11 36307423 to 36307426 3 - TSS region transcription start site region 107426
D11Mit233 11 36325454 to 36325573 119 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 233
Tssr100954 11 36338614 to 36338636 22 + TSS region transcription start site region 100954
Gm33585 11 36356737 to 36428795 72058 + lncRNA gene predicted gene, 33585
Tssr3465 11 36371951 to 36371952 1 + TSS region transcription start site region 3465
Hlb290 11 36391750 to 76087800 39696050 heritable phenotypic marker heart, lung and blood, 290
Thypr1 11 36391750 to 36391888 138 QTL thymocyte proliferative response 1
D11Mit51 11 36391750 to 36391888 138 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 51
Mol4 11 36391750 to 83590530 47198780 QTL modifier of LPS-response 4
Tssr107427 11 36432604 to 36432622 18 - TSS region transcription start site region 107427
Tssr107428 11 36432792 to 36432803 11 - TSS region transcription start site region 107428
Tssr107429 11 36432831 to 36432840 9 - TSS region transcription start site region 107429
Tssr107430 11 36432859 to 36432875 16 - TSS region transcription start site region 107430
Tssr107431 11 36432883 to 36432895 12 - TSS region transcription start site region 107431
Tssr107432 11 36432955 to 36432987 32 - TSS region transcription start site region 107432
Tssr107433 11 36432993 to 36433014 21 - TSS region transcription start site region 107433
Tssr107434 11 36433019 to 36433028 9 - TSS region transcription start site region 107434
Tssr107435 11 36433039 to 36433050 11 - TSS region transcription start site region 107435
Tssr107436 11 36433103 to 36433114 11 - TSS region transcription start site region 107436
Tssr107437 11 36477664 to 36477667 3 - TSS region transcription start site region 107437
Tssr107438 11 36498795 to 36498807 12 - TSS region transcription start site region 107438
Tssr107439 11 36498843 to 36498854 11 - TSS region transcription start site region 107439
Tssr107440 11 36538813 to 36538829 16 - TSS region transcription start site region 107440
Tssr100955 11 36548375 to 36548383 8 + TSS region transcription start site region 100955
Tssr107441 11 36551401 to 36551415 14 - TSS region transcription start site region 107441
Tssr107442 11 36559187 to 36559214 27 - TSS region transcription start site region 107442
Tssr107443 11 36598555 to 36598559 4 - TSS region transcription start site region 107443
Tssr107444 11 36599274 to 36599301 27 - TSS region transcription start site region 107444
Tssr107445 11 36628774 to 36628798 24 - TSS region transcription start site region 107445
Tssr107446 11 36628808 to 36628820 12 - TSS region transcription start site region 107446
Tssr107447 11 36631369 to 36631373 4 - TSS region transcription start site region 107447
Tssr107448 11 36672051 to 36672054 3 - TSS region transcription start site region 107448
Cpgi2736 11 36677426 to 36677580 154 CpG island CpG island 2736
Tssr107449 11 36677491 to 36677541 50 - TSS region transcription start site region 107449
Tssr107450 11 36677681 to 36677690 9 - TSS region transcription start site region 107450
Tssr107451 11 36677731 to 36677742 11 - TSS region transcription start site region 107451
Tssr107452 11 36677772 to 36677786 14 - TSS region transcription start site region 107452
Tssr107453 11 36677818 to 36677837 19 - TSS region transcription start site region 107453
Tssr107454 11 36677867 to 36677894 27 - TSS region transcription start site region 107454
Tssr107455 11 36677913 to 36677939 26 - TSS region transcription start site region 107455
Tssr107456 11 36677950 to 36677966 16 - TSS region transcription start site region 107456
Tssr107457 11 36678534 to 36678540 6 - TSS region transcription start site region 107457
Tssr107458 11 36686245 to 36686250 5 - TSS region transcription start site region 107458
Gm22127 11 36722882 to 36722987 105 + snRNA gene predicted gene, 22127
Tssr107459 11 36770187 to 36770196 9 - TSS region transcription start site region 107459
Tssr107460 11 36823559 to 36823562 3 - TSS region transcription start site region 107460
Tssr107461 11 36831693 to 36831712 19 - TSS region transcription start site region 107461
Tssr100956 11 36962389 to 36962390 1 + TSS region transcription start site region 100956
Tssr107462 11 37059284 to 37059287 3 - TSS region transcription start site region 107462
Tssr107463 11 37104351 to 37104353 2 - TSS region transcription start site region 107463
Cpgi2737 11 37235857 to 37237060 1203 CpG island CpG island 2737
Tssr107464 11 37235965 to 37235994 29 - TSS region transcription start site region 107464
Tssr107465 11 37236074 to 37236084 10 - TSS region transcription start site region 107465
Tssr107466 11 37236141 to 37236189 48 - TSS region transcription start site region 107466
Tssr107467 11 37236230 to 37236314 84 - TSS region transcription start site region 107467
D11Mit217 11 37533558 to 37533692 134 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 217
Gm33791 11 37596976 to 37622362 25386 + lncRNA gene predicted gene, 33791
Tssr100957 11 37597155 to 37597202 47 + TSS region transcription start site region 100957
Gm12128 11 37658989 to 37673166 14177 + lincRNA gene predicted gene 12128
D11Mit109 11 37877753 to 37878002 249 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 109
Ity2a 11 37877753 to 60511890 22634137 QTL immunity to S. typhimurium 2a
D11Mit266 11 38026141 to 38026292 151 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 266
Gm25693 11 38037179 to 38037263 84 - miRNA gene predicted gene, 25693
Gm12129 11 38219069 to 38220215 1146 + pseudogene predicted gene 12129
Tgq22 11 38272579 to 38272579 0 QTL triglyceride QTL 22
Gm12130 11 38493330 to 38520013 26683 - lincRNA gene predicted gene 12130
Gm23520 11 38798171 to 38798277 106 - snRNA gene predicted gene, 23520
Gm18287 11 39169248 to 39170032 784 + pseudogene predicted gene, 18287
Tssr107468 11 39218277 to 39218278 1 - TSS region transcription start site region 107468
4930553C11Rik 11 39307703 to 39390225 82522 - lncRNA gene RIKEN cDNA 4930553C11 gene
Tssr107469 11 39360134 to 39360140 6 - TSS region transcription start site region 107469
Gm33963 11 39588168 to 39696513 108345 + lncRNA gene predicted gene, 33963
D11Dcr7 11 39598310 to 39598413 103 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 7
Gm12131 11 39727070 to 39727712 642 - pseudogene predicted gene 12131
Tssr107470 11 39767831 to 39767837 6 - TSS region transcription start site region 107470
Tssr107471 11 39794269 to 39794285 16 - TSS region transcription start site region 107471
Gm24192 11 39830656 to 39830800 144 + snRNA gene predicted gene, 24192
Gm12132 11 40008194 to 40337831 329637 + lincRNA gene predicted gene 12132
AI594671 11 40036224 to 40036391 167 unclassified gene expressed sequence AI594671
D11Mit307 11 40059901 to 40060013 112 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology 307
Eae44b 11 40059901 to 54203622 14143721 QTL experimental allergic encephalomyelitis susceptibility 44b
D11Mit110 11 40173464 to 40173643 179 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 110
Tssr100958 11 40355384 to 40355393 9 + TSS region transcription start site region 100958
Tssr3466 11 40364696 to 40364701 5 + TSS region transcription start site region 3466
D11Mit218 11 40379825 to 40379968 143 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 218
Gm12133 11 40422693 to 40423254 561 - pseudogene predicted gene 12133
Gm34173 11 40425465 to 40429738 4273 - lncRNA gene predicted gene, 34173
Gm12134 11 40429537 to 40430056 519 + pseudogene predicted gene 12134
Tssr107472 11 40429745 to 40429748 3 - TSS region transcription start site region 107472
Tssr100959 11 40429842 to 40429844 2 + TSS region transcription start site region 100959
Tssr3467 11 40451824 to 40451827 3 + TSS region transcription start site region 3467
D11Mit373 11 40462981 to 40463110 129 DNA segment DNA Segment, Chr 11, Massachusetts Institute of Technology-373
3110004A20Rik 11 40474718 to 40475677 959 - lincRNA gene RIKEN cDNA 3110004A20 gene
Gm12135 11 40505598 to 40506063 465 + pseudogene predicted gene 12135
Gm34281 11 40563827 to 40567314 3487 - lncRNA gene predicted gene, 34281
Gm12136 11 40569317 to 40570525 1208 - pseudogene predicted gene 12136
Tssr107473 11 40570538 to 40570541 3 - TSS region transcription start site region 107473
Gm12137 11 40612718 to 40613063 345 + pseudogene predicted gene 12137
Gm12138 11 40672906 to 40673856 950 - pseudogene predicted gene 12138
Tssr3468 11 40673889 to 40673898 9 - TSS region transcription start site region 3468
Mat2b 11 40679314 to 40695203 15889 - protein coding gene methionine adenosyltransferase II, beta
Tssr107474 11 40680158 to 40680168 10 - TSS region transcription start site region 107474
Tssr107475 11 40684963 to 40684967 4 - TSS region transcription start site region 107475
Cpgi2738 11 40692112 to 40692841 729 CpG island CpG island 2738
Tssr107476 11 40692579 to 40692664 85 - TSS region transcription start site region 107476
Tssr107477 11 40692666 to 40692679 13 - TSS region transcription start site region 107477
Tssr100960 11 40692774 to 40692802 28 + TSS region transcription start site region 100960
Cpgi2739 11 40694694 to 40695049 355 CpG island CpG island 2739
Tssr107478 11 40694838 to 40694849 11 - TSS region transcription start site region 107478
Tssr107479 11 40694867 to 40694923 56 - TSS region transcription start site region 107479