Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3519853-3623238

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smtn 11 3517522 to 3539654 22132 - protein coding gene smoothelin
Cpgi2485 11 3521029 to 3521226 197 CpG island CpG island 2485
Cpgi2486 11 3521641 to 3521807 166 CpG island CpG island 2486
Tssr106484 11 3526451 to 3526477 26 - TSS region transcription start site region 106484
Tssr106485 11 3527916 to 3527959 43 - TSS region transcription start site region 106485
Tssr106486 11 3529556 to 3529592 36 - TSS region transcription start site region 106486
Tssr106487 11 3529880 to 3529889 9 - TSS region transcription start site region 106487
Tssr106488 11 3529907 to 3529925 18 - TSS region transcription start site region 106488
Tssr3410 11 3529999 to 3530009 10 + TSS region transcription start site region 3410
Tssr106489 11 3530015 to 3530040 25 - TSS region transcription start site region 106489
Tssr106490 11 3530046 to 3530065 19 - TSS region transcription start site region 106490
Tssr100060 11 3530228 to 3530239 11 + TSS region transcription start site region 100060
Gm11946 11 3530364 to 3536858 6494 + lncRNA gene predicted gene 11946
Tssr100061 11 3530908 to 3530927 19 + TSS region transcription start site region 100061
Tssr100062 11 3530932 to 3530959 27 + TSS region transcription start site region 100062
Tssr106491 11 3531373 to 3531409 36 - TSS region transcription start site region 106491
Tssr106492 11 3531559 to 3531572 13 - TSS region transcription start site region 106492
Tssr100063 11 3531686 to 3531689 3 + TSS region transcription start site region 100063
Tssr106493 11 3533466 to 3533518 52 - TSS region transcription start site region 106493
Gm11947 11 3534238 to 3534907 669 + unclassified non-coding RNA gene predicted gene 11947
Cpgi2487 11 3535468 to 3536131 663 CpG island CpG island 2487
Cpgi2488 11 3539028 to 3539281 253 CpG island CpG island 2488
Tssr106494 11 3539228 to 3539267 39 - TSS region transcription start site region 106494
Gm33983 11 3539646 to 3546275 6629 + lncRNA gene predicted gene, 33983
Cpgi2489 11 3540518 to 3540708 190 CpG island CpG island 2489
Gm34488 11 3556610 to 3566209 9599 - lncRNA gene predicted gene, 34488
Gm39567 11 3569853 to 3573238 3385 - lncRNA gene predicted gene, 39567
D11Mit1.1 11 3573449 to 3573580 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1.1
D11Mit1 11 3573582 to 3573735 153 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1