Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3452514-4402525

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258 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi2480 11 3451549 to 3452861 1312 CpG island CpG island 2480
8430429K09Rik 11 3452437 to 3479831 27394 + lncRNA gene RIKEN cDNA 8430429K09 gene
Tssr106473 11 3452887 to 3452899 12 - TSS region transcription start site region 106473
Tssr106474 11 3452937 to 3452952 15 - TSS region transcription start site region 106474
Gm11945 11 3470902 to 3471377 475 - pseudogene predicted gene 11945
Tssr106475 11 3471496 to 3471522 26 - TSS region transcription start site region 106475
Gm24439 11 3474285 to 3474401 116 - snoRNA gene predicted gene, 24439
D630033L23Rik 11 3476358 to 3477243 885 unclassified gene RIKEN cDNA D630033L23 gene
Tssr100053 11 3488208 to 3488232 24 + TSS region transcription start site region 100053
Tssr100054 11 3488275 to 3488287 12 + TSS region transcription start site region 100054
Pla2g3 11 3488284 to 3499350 11066 + protein coding gene phospholipase A2, group III
Tssr100055 11 3488292 to 3488304 12 + TSS region transcription start site region 100055
Inpp5j 11 3494375 to 3504821 10446 - protein coding gene inositol polyphosphate 5-phosphatase J
Tssr106476 11 3497423 to 3497435 12 - TSS region transcription start site region 106476
Cpgi2481 11 3502157 to 3502529 372 CpG island CpG island 2481
Tssr106477 11 3502636 to 3502667 31 - TSS region transcription start site region 106477
Tssr106478 11 3503001 to 3503017 16 - TSS region transcription start site region 106478
Tssr106479 11 3504747 to 3504762 15 - TSS region transcription start site region 106479
Tssr106480 11 3504766 to 3504833 67 - TSS region transcription start site region 106480
Tssr106481 11 3504993 to 3505003 10 - TSS region transcription start site region 106481
Tssr106482 11 3505462 to 3505471 9 - TSS region transcription start site region 106482
Tssr106483 11 3509224 to 3509227 3 - TSS region transcription start site region 106483
Cpgi2482 11 3514600 to 3515125 525 CpG island CpG island 2482
Selenom 11 3514702 to 3517351 2649 + protein coding gene selenoprotein M
Tssr100056 11 3514861 to 3514894 33 + TSS region transcription start site region 100056
Tssr100057 11 3514897 to 3514928 31 + TSS region transcription start site region 100057
Tssr100058 11 3514930 to 3514952 22 + TSS region transcription start site region 100058
Tssr3409 11 3516055 to 3516073 18 + TSS region transcription start site region 3409
Tssr100059 11 3516829 to 3516876 47 + TSS region transcription start site region 100059
Cpgi2483 11 3516967 to 3517181 214 CpG island CpG island 2483
Cpgi2484 11 3517473 to 3517932 459 CpG island CpG island 2484
Smtn 11 3517522 to 3539654 22132 - protein coding gene smoothelin
Cpgi2485 11 3521029 to 3521226 197 CpG island CpG island 2485
Cpgi2486 11 3521641 to 3521807 166 CpG island CpG island 2486
Tssr106484 11 3526451 to 3526477 26 - TSS region transcription start site region 106484
Tssr106485 11 3527916 to 3527959 43 - TSS region transcription start site region 106485
Tssr106486 11 3529556 to 3529592 36 - TSS region transcription start site region 106486
Tssr106487 11 3529880 to 3529889 9 - TSS region transcription start site region 106487
Tssr106488 11 3529907 to 3529925 18 - TSS region transcription start site region 106488
Tssr3410 11 3529999 to 3530009 10 + TSS region transcription start site region 3410
Tssr106489 11 3530015 to 3530040 25 - TSS region transcription start site region 106489
Tssr106490 11 3530046 to 3530065 19 - TSS region transcription start site region 106490
Tssr100060 11 3530228 to 3530239 11 + TSS region transcription start site region 100060
Gm11946 11 3530364 to 3536858 6494 + lncRNA gene predicted gene 11946
Tssr100061 11 3530908 to 3530927 19 + TSS region transcription start site region 100061
Tssr100062 11 3530932 to 3530959 27 + TSS region transcription start site region 100062
Tssr106491 11 3531373 to 3531409 36 - TSS region transcription start site region 106491
Tssr106492 11 3531559 to 3531572 13 - TSS region transcription start site region 106492
Tssr100063 11 3531686 to 3531689 3 + TSS region transcription start site region 100063
Tssr106493 11 3533466 to 3533518 52 - TSS region transcription start site region 106493
Gm11947 11 3534238 to 3534907 669 + unclassified non-coding RNA gene predicted gene 11947
Cpgi2487 11 3535468 to 3536131 663 CpG island CpG island 2487
Cpgi2488 11 3539028 to 3539281 253 CpG island CpG island 2488
Tssr106494 11 3539228 to 3539267 39 - TSS region transcription start site region 106494
Gm33983 11 3539646 to 3546275 6629 + lncRNA gene predicted gene, 33983
Cpgi2489 11 3540518 to 3540708 190 CpG island CpG island 2489
Gm34488 11 3556610 to 3566209 9599 - lncRNA gene predicted gene, 34488
Gm39567 11 3569853 to 3573238 3385 - lncRNA gene predicted gene, 39567
D11Mit1.1 11 3573449 to 3573580 131 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1.1
D11Mit1 11 3573582 to 3573735 153 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 1
Gm11949 11 3625477 to 3625848 371 - pseudogene predicted gene 11949
Cpgi2490 11 3628811 to 3629565 754 CpG island CpG island 2490
Gm11950 11 3628824 to 3629661 837 + pseudogene predicted gene 11950
Gm11951 11 3633012 to 3633442 430 - pseudogene predicted gene 11951
Tssr106495 11 3633461 to 3633506 45 - TSS region transcription start site region 106495
Tug1 11 3639785 to 3648814 9029 - antisense lncRNA gene taurine upregulated gene 1
Gm27624 11 3644776 to 3644952 176 - unclassified non-coding RNA gene predicted gene, 27624
Gm27517 11 3645286 to 3645521 235 - unclassified non-coding RNA gene predicted gene, 27517
Gm27937 11 3646942 to 3647029 87 - unclassified non-coding RNA gene predicted gene, 27937
Gm27640 11 3647179 to 3647325 146 - unclassified non-coding RNA gene predicted gene, 27640
Tssr106496 11 3647471 to 3647508 37 - TSS region transcription start site region 106496
Tssr106497 11 3648071 to 3648099 28 - TSS region transcription start site region 106497
Cpgi2491 11 3648350 to 3649965 1615 CpG island CpG island 2491
Tssr106498 11 3648720 to 3648730 10 - TSS region transcription start site region 106498
Tssr106499 11 3648741 to 3648807 66 - TSS region transcription start site region 106499
Tssr100064 11 3648781 to 3648793 12 + TSS region transcription start site region 100064
Tssr106500 11 3648983 to 3649028 45 - TSS region transcription start site region 106500
Tssr106501 11 3649061 to 3649077 16 - TSS region transcription start site region 106501
Tssr100065 11 3649198 to 3649295 97 + TSS region transcription start site region 100065
Morc2a 11 3649494 to 3690477 40983 + protein coding gene microrchidia 2A
Tssr100066 11 3655693 to 3655712 19 + TSS region transcription start site region 100066
Gm26393 11 3656663 to 3656791 128 - snRNA gene predicted gene, 26393
Gm16518 11 3697791 to 3698326 535 - pseudogene predicted gene, 16518
Osbp2 11 3703731 to 3863903 160172 - protein coding gene oxysterol binding protein 2
Cpgi2492 11 3705300 to 3705724 424 CpG island CpG island 2492
Cpgi2493 11 3714535 to 3714725 190 CpG island CpG island 2493
Tssr106502 11 3722160 to 3722184 24 - TSS region transcription start site region 106502
Tssr106503 11 3722189 to 3722222 33 - TSS region transcription start site region 106503
Cpgi2494 11 3761381 to 3762673 1292 CpG island CpG island 2494
Cpgi2495 11 3774195 to 3775166 971 CpG island CpG island 2495
Tssr106504 11 3774694 to 3774702 8 - TSS region transcription start site region 106504
Tssr106505 11 3774706 to 3774738 32 - TSS region transcription start site region 106505
Tssr106506 11 3775133 to 3775162 29 - TSS region transcription start site region 106506
Gm24013 11 3788892 to 3788990 98 + snoRNA gene predicted gene, 24013
Tssr106507 11 3805210 to 3805252 42 - TSS region transcription start site region 106507
Tssr100067 11 3839982 to 3840007 25 + TSS region transcription start site region 100067
Cpgi2496 11 3863165 to 3864417 1252 CpG island CpG island 2496
Tssr106508 11 3863716 to 3863727 11 - TSS region transcription start site region 106508
Tssr106509 11 3863869 to 3863886 17 - TSS region transcription start site region 106509
Tssr106510 11 3863895 to 3863910 15 - TSS region transcription start site region 106510
Gm11952 11 3872955 to 3873775 820 + pseudogene predicted gene 11952
4921536K21Rik 11 3886088 to 3895098 9010 - protein coding gene RIKEN cDNA 4921536K21 gene
Cpgi2497 11 3894615 to 3895407 792 CpG island CpG island 2497
Tssr106511 11 3895085 to 3895104 19 - TSS region transcription start site region 106511
Tssr106512 11 3895110 to 3895136 26 - TSS region transcription start site region 106512
Tssr106513 11 3895141 to 3895165 24 - TSS region transcription start site region 106513
Tssr100068 11 3895223 to 3895310 87 + TSS region transcription start site region 100068
Dusp18 11 3895240 to 3901296 6056 + protein coding gene dual specificity phosphatase 18
Tssr100069 11 3895318 to 3895329 11 + TSS region transcription start site region 100069
Slc35e4 11 3907022 to 3914664 7642 - protein coding gene solute carrier family 35, member E4
Cpgi2498 11 3912706 to 3914897 2191 CpG island CpG island 2498
Tssr106514 11 3913717 to 3913728 11 - TSS region transcription start site region 106514
Tssr106515 11 3913746 to 3913757 11 - TSS region transcription start site region 106515
Tssr106516 11 3913769 to 3913792 23 - TSS region transcription start site region 106516
Tssr106517 11 3913795 to 3913893 98 - TSS region transcription start site region 106517
Tssr106518 11 3914137 to 3914149 12 - TSS region transcription start site region 106518
Tcn2 11 3917192 to 3932159 14967 - protein coding gene transcobalamin 2
Tssr106519 11 3923515 to 3923526 11 - TSS region transcription start site region 106519
Tssr100070 11 3923758 to 3923773 15 + TSS region transcription start site region 100070
Tssr100071 11 3925019 to 3925062 43 + TSS region transcription start site region 100071
Tssr106520 11 3927514 to 3927525 11 - TSS region transcription start site region 106520
Tssr106521 11 3931505 to 3931544 39 - TSS region transcription start site region 106521
Tssr106522 11 3931545 to 3931570 25 - TSS region transcription start site region 106522
Tssr106523 11 3931588 to 3931599 11 - TSS region transcription start site region 106523
Tssr106524 11 3931791 to 3931816 25 - TSS region transcription start site region 106524
Tssr106525 11 3931976 to 3931981 5 - TSS region transcription start site region 106525
Tssr106526 11 3931998 to 3932083 85 - TSS region transcription start site region 106526
4930556J24Rik 11 3937541 to 3976778 39237 - protein coding gene RIKEN cDNA 4930556J24 gene
Gm11953 11 3951714 to 3952716 1002 + pseudogene predicted gene 11953
Tssr100072 11 3963951 to 3963964 13 + TSS region transcription start site region 100072
Tssr100073 11 3963970 to 3963983 13 + TSS region transcription start site region 100073
Pes1 11 3963975 to 3980004 16029 + protein coding gene pescadillo ribosomal biogenesis factor 1
Cpgi2499 11 3963979 to 3964208 229 CpG island CpG island 2499
Tssr100074 11 3963987 to 3964021 34 + TSS region transcription start site region 100074
Tssr100075 11 3967732 to 3967735 3 + TSS region transcription start site region 100075
Tssr106527 11 3983308 to 3983318 10 - TSS region transcription start site region 106527
Cpgi2500 11 3983413 to 3984209 796 CpG island CpG island 2500
Gal3st1 11 3983636 to 3999326 15690 + protein coding gene galactose-3-O-sulfotransferase 1
Tssr100076 11 3983640 to 3983695 55 + TSS region transcription start site region 100076
Tssr100077 11 3983704 to 3983737 33 + TSS region transcription start site region 100077
Tssr100078 11 3983740 to 3983758 18 + TSS region transcription start site region 100078
Tssr106528 11 3983973 to 3983985 12 - TSS region transcription start site region 106528
Tssr106529 11 3983987 to 3983999 12 - TSS region transcription start site region 106529
Gm46265 11 3985165 to 3988759 3594 + lncRNA gene predicted gene, 46265
Tssr100079 11 3989924 to 3989946 22 + TSS region transcription start site region 100079
Tssr100080 11 3992489 to 3992524 35 + TSS region transcription start site region 100080
Cpgi2501 11 3997847 to 3999163 1316 CpG island CpG island 2501
Lgth12 11 4000000 to 95000000 91000000 QTL body length 12
Wght10 11 4000000 to 89000000 85000000 QTL weight 10
Gm11954 11 4002457 to 4002805 348 + pseudogene predicted gene 11954
Tssr100081 11 4031457 to 4031498 41 + TSS region transcription start site region 100081
Sec14l4 11 4031462 to 4048024 16562 + protein coding gene SEC14-like lipid binding 4
Tssr100082 11 4031606 to 4031614 8 + TSS region transcription start site region 100082
Tssr100083 11 4031770 to 4031833 63 + TSS region transcription start site region 100083
Cpgi2502 11 4031921 to 4032181 260 CpG island CpG island 2502
Tssr100084 11 4035068 to 4035101 33 + TSS region transcription start site region 100084
Tssr100085 11 4046318 to 4046319 1 + TSS region transcription start site region 100085
Tssr100086 11 4048621 to 4048633 12 + TSS region transcription start site region 100086
Sec14l3 11 4064841 to 4077736 12895 + protein coding gene SEC14-like lipid binding 3
Tssr100087 11 4064881 to 4064898 17 + TSS region transcription start site region 100087
Tssr100088 11 4064909 to 4064927 18 + TSS region transcription start site region 100088
Tssr100089 11 4069926 to 4069968 42 + TSS region transcription start site region 100089
Tssr100090 11 4077117 to 4077131 14 + TSS region transcription start site region 100090
Tssr100091 11 4077349 to 4077353 4 + TSS region transcription start site region 100091
Mtfp1 11 4091481 to 4095431 3950 - protein coding gene mitochondrial fission process 1
Cpgi2503 11 4094757 to 4095528 771 CpG island CpG island 2503
Tssr106530 11 4095313 to 4095318 5 - TSS region transcription start site region 106530
Tssr106531 11 4095333 to 4095336 3 - TSS region transcription start site region 106531
Tssr106532 11 4095344 to 4095440 96 - TSS region transcription start site region 106532
Cpgi2504 11 4096428 to 4097051 623 CpG island CpG island 2504
Tssr100092 11 4096853 to 4096905 52 + TSS region transcription start site region 100092
Sec14l2 11 4097039 to 4118729 21690 - protein coding gene SEC14-like lipid binding 2
Tssr106533 11 4103797 to 4103801 4 - TSS region transcription start site region 106533
Tssr106534 11 4104813 to 4104824 11 - TSS region transcription start site region 106534
Gm11955 11 4107755 to 4108224 469 + pseudogene predicted gene 11955
Tssr106535 11 4116711 to 4116744 33 - TSS region transcription start site region 106535
Cpgi2505 11 4118300 to 4119167 867 CpG island CpG island 2505
Tssr106536 11 4118698 to 4118705 7 - TSS region transcription start site region 106536
Tssr106537 11 4118723 to 4118769 46 - TSS region transcription start site region 106537
Tssr106538 11 4118778 to 4118790 12 - TSS region transcription start site region 106538
Tssr100093 11 4121487 to 4121499 12 + TSS region transcription start site region 100093
Tssr106539 11 4123414 to 4123424 10 - TSS region transcription start site region 106539
Gm11957 11 4129372 to 4130150 778 - pseudogene predicted gene 11957
Cpgi2506 11 4134687 to 4135983 1296 CpG island CpG island 2506
Tssr100094 11 4135167 to 4135222 55 + TSS region transcription start site region 100094
Rnf215 11 4135202 to 4141172 5970 + protein coding gene ring finger protein 215
Tssr100095 11 4135233 to 4135246 13 + TSS region transcription start site region 100095
Tssr106540 11 4135354 to 4135357 3 - TSS region transcription start site region 106540
Mir3060 11 4139364 to 4139446 82 + miRNA gene microRNA 3060
Ccdc157 11 4141123 to 4160293 19170 - protein coding gene coiled-coil domain containing 157
Cpgi2507 11 4160077 to 4160740 663 CpG island CpG island 2507
Tssr106541 11 4160218 to 4160231 13 - TSS region transcription start site region 106541
Tssr106542 11 4160232 to 4160282 50 - TSS region transcription start site region 106542
Tssr106543 11 4160286 to 4160305 19 - TSS region transcription start site region 106543
Tssr100096 11 4160348 to 4160404 56 + TSS region transcription start site region 100096
Sf3a1 11 4160354 to 4182541 22187 + protein coding gene splicing factor 3a, subunit 1
Tssr3411 11 4160425 to 4160427 2 + TSS region transcription start site region 3411
Tssr100097 11 4160508 to 4160518 10 + TSS region transcription start site region 100097
Tssr100098 11 4161094 to 4161119 25 + TSS region transcription start site region 100098
Tssr100099 11 4175054 to 4175078 24 + TSS region transcription start site region 100099