Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:3392937-3512952

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Limk2 11 3344256 to 3409189 64933 - protein coding gene LIM motif-containing protein kinase 2
Tssr3408 11 3393366 to 3393369 3 - TSS region transcription start site region 3408
Cpgi2479 11 3408740 to 3409408 668 CpG island CpG island 2479
Tssr106468 11 3409079 to 3409088 9 - TSS region transcription start site region 106468
Tssr106469 11 3409116 to 3409159 43 - TSS region transcription start site region 106469
Tssr106470 11 3409162 to 3409195 33 - TSS region transcription start site region 106470
Rnf185 11 3415982 to 3452363 36381 - protein coding gene ring finger protein 185
Cpgi2480 11 3451549 to 3452861 1312 CpG island CpG island 2480
Tssr106471 11 3452262 to 3452352 90 - TSS region transcription start site region 106471
Tssr106472 11 3452355 to 3452378 23 - TSS region transcription start site region 106472
8430429K09Rik 11 3452437 to 3479831 27394 + lncRNA gene RIKEN cDNA 8430429K09 gene
Tssr100052 11 3452458 to 3452510 52 + TSS region transcription start site region 100052
Tssr106473 11 3452887 to 3452899 12 - TSS region transcription start site region 106473
Tssr106474 11 3452937 to 3452952 15 - TSS region transcription start site region 106474
Gm11945 11 3470902 to 3471377 475 - pseudogene predicted gene 11945
Tssr106475 11 3471496 to 3471522 26 - TSS region transcription start site region 106475
Gm24439 11 3474285 to 3474401 116 - snoRNA gene predicted gene, 24439
D630033L23Rik 11 3476358 to 3477243 885 unclassified gene RIKEN cDNA D630033L23 gene
Tssr100053 11 3488208 to 3488232 24 + TSS region transcription start site region 100053
Tssr100054 11 3488275 to 3488287 12 + TSS region transcription start site region 100054
Pla2g3 11 3488284 to 3499350 11066 + protein coding gene phospholipase A2, group III
Tssr100055 11 3488292 to 3488304 12 + TSS region transcription start site region 100055
Inpp5j 11 3494375 to 3504821 10446 - protein coding gene inositol polyphosphate 5-phosphatase J
Tssr106476 11 3497423 to 3497435 12 - TSS region transcription start site region 106476
Cpgi2481 11 3502157 to 3502529 372 CpG island CpG island 2481
Tssr106477 11 3502636 to 3502667 31 - TSS region transcription start site region 106477
Tssr106478 11 3503001 to 3503017 16 - TSS region transcription start site region 106478
Tssr106479 11 3504747 to 3504762 15 - TSS region transcription start site region 106479
Tssr106480 11 3504766 to 3504833 67 - TSS region transcription start site region 106480
Tssr106481 11 3504993 to 3505003 10 - TSS region transcription start site region 106481
Tssr106482 11 3505462 to 3505471 9 - TSS region transcription start site region 106482
Tssr106483 11 3509224 to 3509227 3 - TSS region transcription start site region 106483