Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:33876815-35133892

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcnip1 11 33629339 to 33993152 363813 - protein coding gene Kv channel-interacting protein 1
Tssr107351 11 33880120 to 33880123 3 - TSS region transcription start site region 107351
Gm39678 11 33889170 to 33895850 6680 - lncRNA gene predicted gene, 39678
Gm39677 11 33891046 to 33894473 3427 + lncRNA gene predicted gene, 39677
Tssr3460 11 33915377 to 33915378 1 - TSS region transcription start site region 3460
Tssr107352 11 33933013 to 33933018 5 - TSS region transcription start site region 107352
Gm36395 11 33933632 to 33937955 4323 + lncRNA gene predicted gene, 36395
Tssr100885 11 33940208 to 33940251 43 + TSS region transcription start site region 100885
Tssr100886 11 33940265 to 33940276 11 + TSS region transcription start site region 100886
Kcnmb1 11 33963013 to 33973641 10628 + protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 1
Tssr100887 11 33963206 to 33963243 37 + TSS region transcription start site region 100887
Tssr100888 11 33963281 to 33963297 16 + TSS region transcription start site region 100888
D11Mit173 11 33966086 to 33966219 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 173
Tgyl1 11 33966219 to 6930277 -27035942 QTL triglyceride level 1
Tssr107353 11 33992981 to 33993009 28 - TSS region transcription start site region 107353
Tssr107354 11 33993146 to 33993159 13 - TSS region transcription start site region 107354
Tssr107355 11 34008910 to 34008919 9 - TSS region transcription start site region 107355
Tssr100889 11 34009399 to 34009439 40 + TSS region transcription start site region 100889
Tssr100890 11 34023079 to 34023085 6 + TSS region transcription start site region 100890
Tssr100891 11 34046922 to 34046958 36 + TSS region transcription start site region 100891
Tssr100892 11 34047078 to 34047093 15 + TSS region transcription start site region 100892
Tssr100893 11 34047115 to 34047242 127 + TSS region transcription start site region 100893
Lcp2 11 34047201 to 34092280 45079 + protein coding gene lymphocyte cytosolic protein 2
Tssr100894 11 34047243 to 34047257 14 + TSS region transcription start site region 100894
Tssr100895 11 34047290 to 34047299 9 + TSS region transcription start site region 100895
Tssr100896 11 34047321 to 34047326 5 + TSS region transcription start site region 100896
Tssr100897 11 34047646 to 34047657 11 + TSS region transcription start site region 100897
Tssr100898 11 34048831 to 34048835 4 + TSS region transcription start site region 100898
Tssr100899 11 34048971 to 34048984 13 + TSS region transcription start site region 100899
Tssr100900 11 34054289 to 34054311 22 + TSS region transcription start site region 100900
Tssr100901 11 34071013 to 34071018 5 + TSS region transcription start site region 100901
Tssr100902 11 34071059 to 34071069 10 + TSS region transcription start site region 100902
Tssr100903 11 34071099 to 34071138 39 + TSS region transcription start site region 100903
Tssr100904 11 34073535 to 34073558 23 + TSS region transcription start site region 100904
Tssr107356 11 34075077 to 34075122 45 - TSS region transcription start site region 107356
Tssr100905 11 34075128 to 34075149 21 + TSS region transcription start site region 100905
Tssr100906 11 34075236 to 34075266 30 + TSS region transcription start site region 100906
Tssr100907 11 34075295 to 34075309 14 + TSS region transcription start site region 100907
Tssr100908 11 34077266 to 34077288 22 + TSS region transcription start site region 100908
Tssr100909 11 34077462 to 34077480 18 + TSS region transcription start site region 100909
Tssr100910 11 34078110 to 34078119 9 + TSS region transcription start site region 100910
Tssr100911 11 34078123 to 34078135 12 + TSS region transcription start site region 100911
Tssr100912 11 34078155 to 34078162 7 + TSS region transcription start site region 100912
Tssr100913 11 34078169 to 34078181 12 + TSS region transcription start site region 100913
Tssr100914 11 34078503 to 34078514 11 + TSS region transcription start site region 100914
Tssr100915 11 34078917 to 34078955 38 + TSS region transcription start site region 100915
Tssr100916 11 34083505 to 34083520 15 + TSS region transcription start site region 100916
Tssr100917 11 34083616 to 34083629 13 + TSS region transcription start site region 100917
Tssr100918 11 34091214 to 34091226 12 + TSS region transcription start site region 100918
Tssr100919 11 34091229 to 34091243 14 + TSS region transcription start site region 100919
Tssr100920 11 34091444 to 34091464 20 + TSS region transcription start site region 100920
4930469K13Rik 11 34091579 to 34104193 12614 - unclassified non-coding RNA gene RIKEN cDNA 4930469K13 gene
4930519N06Rik 11 34093042 to 34094125 1083 unclassified gene RIKEN cDNA 4930519N06 gene
Tssr107357 11 34098539 to 34098556 17 - TSS region transcription start site region 107357
Tssr107358 11 34098557 to 34098591 34 - TSS region transcription start site region 107358
Tssr107359 11 34103730 to 34103743 13 - TSS region transcription start site region 107359
Cpgi2722 11 34125305 to 34125497 192 CpG island CpG island 2722
Tssr100921 11 34136959 to 34136965 6 + TSS region transcription start site region 100921
Gm12121 11 34141827 to 34143421 1594 + lincRNA gene predicted gene 12121
Foxi1 11 34204341 to 34208089 3748 - protein coding gene forkhead box I1
Tssr107360 11 34207562 to 34207572 10 - TSS region transcription start site region 107360
Cpgi2723 11 34207576 to 34208035 459 CpG island CpG island 2723
Tssr107361 11 34207586 to 34207593 7 - TSS region transcription start site region 107361
Tssr107362 11 34208085 to 34208092 7 - TSS region transcription start site region 107362
Dock2 11 34226815 to 34783892 557077 - protein coding gene dedicator of cyto-kinesis 2
Tssr107363 11 34227268 to 34227279 11 - TSS region transcription start site region 107363
Tssr107364 11 34227353 to 34227380 27 - TSS region transcription start site region 107364
Tssr107365 11 34227547 to 34227565 18 - TSS region transcription start site region 107365
Tssr107366 11 34228691 to 34228711 20 - TSS region transcription start site region 107366
Tssr100922 11 34299695 to 34299701 6 + TSS region transcription start site region 100922
Tssr100923 11 34299706 to 34299720 14 + TSS region transcription start site region 100923
4930403D09Rik 11 34299707 to 34308113 8406 + antisense lncRNA gene RIKEN cDNA 4930403D09 gene
Tssr100924 11 34299736 to 34299755 19 + TSS region transcription start site region 100924
Tssr107367 11 34311739 to 34311757 18 - TSS region transcription start site region 107367
Tssr107368 11 34311793 to 34311811 18 - TSS region transcription start site region 107368
Tssr107369 11 34313856 to 34313868 12 - TSS region transcription start site region 107369
Tssr100925 11 34314757 to 34314786 29 + TSS region transcription start site region 100925
Insyn2b 11 34314822 to 34422640 107818 + protein coding gene inhibitory synaptic factor family member 2B
Tssr107370 11 34317775 to 34317780 5 - TSS region transcription start site region 107370
Tssr107371 11 34361059 to 34361075 16 - TSS region transcription start site region 107371
Tssr107372 11 34365874 to 34365886 12 - TSS region transcription start site region 107372
Tssr107373 11 34393900 to 34393935 35 - TSS region transcription start site region 107373
Tssr107374 11 34406974 to 34406986 12 - TSS region transcription start site region 107374
Tssr107375 11 34407065 to 34407078 13 - TSS region transcription start site region 107375
Tssr107376 11 34407121 to 34407135 14 - TSS region transcription start site region 107376
Tssr107377 11 34477890 to 34477902 12 - TSS region transcription start site region 107377
Tssr107378 11 34497162 to 34497173 11 - TSS region transcription start site region 107378
Gm29887 11 34506366 to 34514259 7893 + lncRNA gene predicted gene, 29887
Tssr100926 11 34506974 to 34506984 10 + TSS region transcription start site region 100926
Tssr3461 11 34507077 to 34507083 6 + TSS region transcription start site region 3461
Gm39681 11 34514570 to 34515180 610 + lncRNA gene predicted gene, 39681
D11Mit84 11 34533052 to 34533182 130 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 84
4933402E15Rik 11 34535637 to 34537001 1364 unclassified gene RIKEN cDNA 4933402E15 gene
Tssr107379 11 34543987 to 34544001 14 - TSS region transcription start site region 107379
Tssr107380 11 34544845 to 34544903 58 - TSS region transcription start site region 107380
Tssr107381 11 34681693 to 34681712 19 - TSS region transcription start site region 107381
Tssr107382 11 34681735 to 34681762 27 - TSS region transcription start site region 107382
Tssr107383 11 34681830 to 34681883 53 - TSS region transcription start site region 107383
Tssr107384 11 34681907 to 34681955 48 - TSS region transcription start site region 107384
Tssr107385 11 34682074 to 34682097 23 - TSS region transcription start site region 107385
Tssr107386 11 34682114 to 34682172 58 - TSS region transcription start site region 107386
Tssr107387 11 34682226 to 34682251 25 - TSS region transcription start site region 107387
Tssr107388 11 34683732 to 34683743 11 - TSS region transcription start site region 107388
Tssr107389 11 34696219 to 34696233 14 - TSS region transcription start site region 107389
Tssr107390 11 34711925 to 34711937 12 - TSS region transcription start site region 107390
Tssr107391 11 34718950 to 34718985 35 - TSS region transcription start site region 107391
Tssr107392 11 34737822 to 34737829 7 - TSS region transcription start site region 107392
Tssr107393 11 34744657 to 34744686 29 - TSS region transcription start site region 107393
Tssr107394 11 34770688 to 34770722 34 - TSS region transcription start site region 107394
Tssr107395 11 34771423 to 34771435 12 - TSS region transcription start site region 107395
Tssr107396 11 34783122 to 34783135 13 - TSS region transcription start site region 107396
Tssr100927 11 34783254 to 34783291 37 + TSS region transcription start site region 100927
Tssr107397 11 34783850 to 34783900 50 - TSS region transcription start site region 107397
Tssr100928 11 34783957 to 34783990 33 + TSS region transcription start site region 100928
Spdl1 11 34809190 to 34833641 24451 - protein coding gene spindle apparatus coiled-coil protein 1
Tssr100929 11 34827206 to 34827215 9 + TSS region transcription start site region 100929
Cpgi2724 11 34833214 to 34834015 801 CpG island CpG island 2724
Tssr107398 11 34833584 to 34833596 12 - TSS region transcription start site region 107398
Tssr107399 11 34833603 to 34833626 23 - TSS region transcription start site region 107399
Tssr107400 11 34833631 to 34833663 32 - TSS region transcription start site region 107400
Tssr100930 11 34833719 to 34833772 53 + TSS region transcription start site region 100930
Tssr100931 11 34833786 to 34833791 5 + TSS region transcription start site region 100931
Tssr107401 11 34839116 to 34839125 9 - TSS region transcription start site region 107401
Tssr100932 11 34839416 to 34839420 4 + TSS region transcription start site region 100932
Gm22022 11 34842228 to 34842354 126 - snoRNA gene predicted gene, 22022
D11Dcr5 11 34866601 to 34866697 96 DNA segment DNA Segment, Chr 11, Derry C. Roopenian 5
Tssr107402 11 34871542 to 34871545 3 - TSS region transcription start site region 107402
Gm12711 11 34880339 to 34882531 2192 + lincRNA gene predicted gene 12711
Gm25799 11 34899017 to 34899123 106 + snRNA gene predicted gene, 25799
Gm33277 11 34938945 to 34941727 2782 - lncRNA gene predicted gene, 33277
Tssr100933 11 35078563 to 35078572 9 + TSS region transcription start site region 100933
Cpgi2725 11 35120919 to 35122157 1238 CpG island CpG island 2725
Tssr100934 11 35121065 to 35121118 53 + TSS region transcription start site region 100934
Tssr100935 11 35121126 to 35121141 15 + TSS region transcription start site region 100935
Tssr100936 11 35121397 to 35121512 115 + TSS region transcription start site region 100936
Slit3 11 35121456 to 35708507 587051 + protein coding gene slit guidance ligand 3