Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:33872243-34222257

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcnip1 11 33629339 to 33993152 363813 - protein coding gene Kv channel-interacting protein 1
Tssr100884 11 33872445 to 33872451 6 + TSS region transcription start site region 100884
Tssr107351 11 33880120 to 33880123 3 - TSS region transcription start site region 107351
Gm39678 11 33889170 to 33895850 6680 - lncRNA gene predicted gene, 39678
Gm39677 11 33891046 to 33894473 3427 + lncRNA gene predicted gene, 39677
Tssr3460 11 33915377 to 33915378 1 - TSS region transcription start site region 3460
Tssr107352 11 33933013 to 33933018 5 - TSS region transcription start site region 107352
Gm36395 11 33933632 to 33937955 4323 + lncRNA gene predicted gene, 36395
Tssr100885 11 33940208 to 33940251 43 + TSS region transcription start site region 100885
Tssr100886 11 33940265 to 33940276 11 + TSS region transcription start site region 100886
Kcnmb1 11 33963013 to 33973641 10628 + protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 1
Tssr100887 11 33963206 to 33963243 37 + TSS region transcription start site region 100887
Tssr100888 11 33963281 to 33963297 16 + TSS region transcription start site region 100888
D11Mit173 11 33966086 to 33966219 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 173
Tgyl1 11 33966219 to 6930277 -27035942 QTL triglyceride level 1
Tssr107353 11 33992981 to 33993009 28 - TSS region transcription start site region 107353
Tssr107354 11 33993146 to 33993159 13 - TSS region transcription start site region 107354
Tssr107355 11 34008910 to 34008919 9 - TSS region transcription start site region 107355
Tssr100889 11 34009399 to 34009439 40 + TSS region transcription start site region 100889
Tssr100890 11 34023079 to 34023085 6 + TSS region transcription start site region 100890
Tssr100891 11 34046922 to 34046958 36 + TSS region transcription start site region 100891
Tssr100892 11 34047078 to 34047093 15 + TSS region transcription start site region 100892
Tssr100893 11 34047115 to 34047242 127 + TSS region transcription start site region 100893
Lcp2 11 34047201 to 34092280 45079 + protein coding gene lymphocyte cytosolic protein 2
Tssr100894 11 34047243 to 34047257 14 + TSS region transcription start site region 100894
Tssr100895 11 34047290 to 34047299 9 + TSS region transcription start site region 100895
Tssr100896 11 34047321 to 34047326 5 + TSS region transcription start site region 100896
Tssr100897 11 34047646 to 34047657 11 + TSS region transcription start site region 100897
Tssr100898 11 34048831 to 34048835 4 + TSS region transcription start site region 100898
Tssr100899 11 34048971 to 34048984 13 + TSS region transcription start site region 100899
Tssr100900 11 34054289 to 34054311 22 + TSS region transcription start site region 100900
Tssr100901 11 34071013 to 34071018 5 + TSS region transcription start site region 100901
Tssr100902 11 34071059 to 34071069 10 + TSS region transcription start site region 100902
Tssr100903 11 34071099 to 34071138 39 + TSS region transcription start site region 100903
Tssr100904 11 34073535 to 34073558 23 + TSS region transcription start site region 100904
Tssr107356 11 34075077 to 34075122 45 - TSS region transcription start site region 107356
Tssr100905 11 34075128 to 34075149 21 + TSS region transcription start site region 100905
Tssr100906 11 34075236 to 34075266 30 + TSS region transcription start site region 100906
Tssr100907 11 34075295 to 34075309 14 + TSS region transcription start site region 100907
Tssr100908 11 34077266 to 34077288 22 + TSS region transcription start site region 100908
Tssr100909 11 34077462 to 34077480 18 + TSS region transcription start site region 100909
Tssr100910 11 34078110 to 34078119 9 + TSS region transcription start site region 100910
Tssr100911 11 34078123 to 34078135 12 + TSS region transcription start site region 100911
Tssr100912 11 34078155 to 34078162 7 + TSS region transcription start site region 100912
Tssr100913 11 34078169 to 34078181 12 + TSS region transcription start site region 100913
Tssr100914 11 34078503 to 34078514 11 + TSS region transcription start site region 100914
Tssr100915 11 34078917 to 34078955 38 + TSS region transcription start site region 100915
Tssr100916 11 34083505 to 34083520 15 + TSS region transcription start site region 100916
Tssr100917 11 34083616 to 34083629 13 + TSS region transcription start site region 100917
Tssr100918 11 34091214 to 34091226 12 + TSS region transcription start site region 100918
Tssr100919 11 34091229 to 34091243 14 + TSS region transcription start site region 100919
Tssr100920 11 34091444 to 34091464 20 + TSS region transcription start site region 100920
4930469K13Rik 11 34091579 to 34104193 12614 - unclassified non-coding RNA gene RIKEN cDNA 4930469K13 gene
4930519N06Rik 11 34093042 to 34094125 1083 unclassified gene RIKEN cDNA 4930519N06 gene
Tssr107357 11 34098539 to 34098556 17 - TSS region transcription start site region 107357
Tssr107358 11 34098557 to 34098591 34 - TSS region transcription start site region 107358
Tssr107359 11 34103730 to 34103743 13 - TSS region transcription start site region 107359
Cpgi2722 11 34125305 to 34125497 192 CpG island CpG island 2722
Tssr100921 11 34136959 to 34136965 6 + TSS region transcription start site region 100921
Gm12121 11 34141827 to 34143421 1594 + lincRNA gene predicted gene 12121
Foxi1 11 34204341 to 34208089 3748 - protein coding gene forkhead box I1
Tssr107360 11 34207562 to 34207572 10 - TSS region transcription start site region 107360
Cpgi2723 11 34207576 to 34208035 459 CpG island CpG island 2723
Tssr107361 11 34207586 to 34207593 7 - TSS region transcription start site region 107361
Tssr107362 11 34208085 to 34208092 7 - TSS region transcription start site region 107362