Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:33609339-34013152

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D130052B06Rik 11 33607803 to 33625437 17634 + unclassified gene RIKEN cDNA D130052B06 gene
Kcnip1 11 33629339 to 33993152 363813 - protein coding gene Kv channel-interacting protein 1
D11Mit135 11 33666590 to 33666736 146 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 135
Cpgi2719 11 33680392 to 33680704 312 CpG island CpG island 2719
Gm12119 11 33695894 to 33697908 2014 + antisense lncRNA gene predicted gene 12119
D11Mit216 11 33698361 to 33698512 151 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 216
Gm12120 11 33705550 to 33711435 5885 + antisense lncRNA gene predicted gene 12120
Cpgi2720 11 33749479 to 33749745 266 CpG island CpG island 2720
Tssr107345 11 33755044 to 33755056 12 - TSS region transcription start site region 107345
Tssr107346 11 33755103 to 33755107 4 - TSS region transcription start site region 107346
Cpgi2721 11 33843127 to 33843910 783 CpG island CpG island 2721
Tssr107347 11 33843405 to 33843416 11 - TSS region transcription start site region 107347
Tssr107348 11 33843526 to 33843629 103 - TSS region transcription start site region 107348
Tssr107349 11 33843676 to 33843687 11 - TSS region transcription start site region 107349
Tssr107350 11 33843693 to 33843713 20 - TSS region transcription start site region 107350
Gm39679 11 33857280 to 33871278 13998 + lncRNA gene predicted gene, 39679
Tssr100884 11 33872445 to 33872451 6 + TSS region transcription start site region 100884
Tssr107351 11 33880120 to 33880123 3 - TSS region transcription start site region 107351
Gm39678 11 33889170 to 33895850 6680 - lncRNA gene predicted gene, 39678
Gm39677 11 33891046 to 33894473 3427 + lncRNA gene predicted gene, 39677
Tssr3460 11 33915377 to 33915378 1 - TSS region transcription start site region 3460
Tssr107352 11 33933013 to 33933018 5 - TSS region transcription start site region 107352
Gm36395 11 33933632 to 33937955 4323 + lncRNA gene predicted gene, 36395
Tssr100885 11 33940208 to 33940251 43 + TSS region transcription start site region 100885
Tssr100886 11 33940265 to 33940276 11 + TSS region transcription start site region 100886
Kcnmb1 11 33963013 to 33973641 10628 + protein coding gene potassium large conductance calcium-activated channel, subfamily M, beta member 1
Tssr100887 11 33963206 to 33963243 37 + TSS region transcription start site region 100887
Tssr100888 11 33963281 to 33963297 16 + TSS region transcription start site region 100888
D11Mit173 11 33966086 to 33966219 133 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 173
Tgyl1 11 33966219 to 6930277 -27035942 QTL triglyceride level 1
Tssr107353 11 33992981 to 33993009 28 - TSS region transcription start site region 107353
Tssr107354 11 33993146 to 33993159 13 - TSS region transcription start site region 107354
Tssr107355 11 34008910 to 34008919 9 - TSS region transcription start site region 107355
Tssr100889 11 34009399 to 34009439 40 + TSS region transcription start site region 100889